Wall clock time and date at job start Sun Mar 29 2020 22:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46837 * 2 1 4 4 C 1.53010 * 109.46964 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.46747 * 179.97438 * 4 3 2 6 6 C 1.36862 * 120.00069 * 269.99636 * 5 4 3 7 7 H 1.08000 * 120.00251 * 7.26934 * 6 5 4 8 8 C 1.38784 * 119.99967 * 187.26921 * 6 5 4 9 9 N 1.31597 * 119.99846 * 352.28444 * 8 6 5 10 10 Si 1.86798 * 119.99958 * 172.28465 * 8 6 5 11 11 H 1.48506 * 109.47137 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47120 * 119.99771 * 10 8 6 13 13 H 1.48497 * 109.47369 * 240.00183 * 10 8 6 14 14 C 1.38908 * 120.00048 * 90.00325 * 5 4 3 15 15 N 1.32407 * 119.75574 * 264.37561 * 14 5 4 16 16 C 1.31923 * 121.69434 * 179.97438 * 15 14 5 17 17 C 1.38178 * 121.01736 * 359.97438 * 16 15 14 18 18 C 1.38751 * 119.41131 * 359.97438 * 17 16 15 19 19 C 1.38965 * 118.44221 * 0.02562 * 18 17 16 20 20 N 1.39768 * 120.52485 * 179.97438 * 19 18 17 21 21 H 1.08997 * 109.47557 * 60.00151 * 1 2 3 22 22 H 1.09007 * 109.47022 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47075 * 299.99608 * 1 2 3 24 24 H 1.09004 * 109.47075 * 240.00392 * 2 1 3 25 25 H 1.08997 * 109.47557 * 119.99849 * 2 1 3 26 26 H 1.08993 * 109.47377 * 60.00030 * 3 2 1 27 27 H 1.09002 * 109.46969 * 299.99327 * 3 2 1 28 28 H 1.09002 * 109.46933 * 59.99771 * 4 3 2 29 29 H 1.08997 * 109.46627 * 299.99866 * 4 3 2 30 30 H 0.97001 * 119.99429 * 185.00046 * 9 8 6 31 31 H 1.08002 * 119.48927 * 179.71769 * 16 15 14 32 32 H 1.08010 * 120.29204 * 179.97438 * 17 16 15 33 33 H 1.08008 * 120.77832 * 180.02562 * 18 17 16 34 34 H 0.97002 * 119.99943 * 185.22129 * 20 19 18 35 35 H 0.96991 * 120.00088 * 5.21693 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2858 3.4686 -1.1868 7 1 3.9961 3.0048 -2.1181 8 6 4.8889 4.7185 -1.1922 9 7 5.1038 5.3503 -0.0580 10 14 5.3956 5.5040 -2.8095 11 1 5.0461 4.5963 -3.9317 12 1 4.6821 6.7955 -2.9775 13 1 6.8609 5.7450 -2.8052 14 6 4.2902 3.4790 1.2014 15 7 3.3539 4.2621 1.7144 16 6 3.5333 4.9020 2.8540 17 6 4.7136 4.7784 3.5618 18 6 5.7244 3.9679 3.0651 19 6 5.5104 3.3049 1.8627 20 7 6.4991 2.4780 1.3222 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9563 -0.8901 28 1 3.9329 0.9289 -0.8909 29 1 3.9336 0.9287 0.8891 30 1 5.4582 6.2532 -0.0655 31 1 2.7472 5.5354 3.2376 32 1 4.8482 5.3079 4.4935 33 1 6.6557 3.8551 3.6003 34 1 6.3727 2.0792 0.4470 35 1 7.3116 2.3031 1.8221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:32 Heat of formation + Delta-G solvation = 33.084299 kcal Electronic energy + Delta-G solvation = -17129.635438 eV Core-core repulsion = 14548.190442 eV Total energy + Delta-G solvation = -2581.444996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58288 -37.65246 -35.58948 -35.20214 -33.15730 -31.68678 -29.65884 -28.77159 -26.18205 -24.24438 -23.23782 -22.29778 -21.68789 -19.47889 -17.79742 -17.30242 -17.04082 -16.42990 -16.12686 -15.46298 -15.41140 -14.86681 -14.62086 -13.88881 -13.76506 -13.52904 -13.24516 -13.13207 -12.84478 -12.75796 -12.30868 -12.20194 -11.98605 -11.86807 -11.66617 -11.59272 -11.29968 -10.90357 -9.81913 -9.79753 -8.90486 -8.28523 -7.40393 -5.27264 1.05434 1.23193 1.45056 1.47054 1.55556 2.49394 3.31871 3.40491 3.45530 3.74110 4.15015 4.20630 4.40799 4.43926 4.54102 4.59111 4.72156 4.82630 4.97842 5.01726 5.05952 5.11446 5.19874 5.23934 5.40250 5.49550 5.59297 5.61261 5.65024 5.81195 6.15358 6.34055 6.87623 7.26203 7.35801 7.87872 8.16112 8.26995 9.21329 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.011677 C = 0.008318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.583837 B = 2397.225959 C = 3365.226412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.154 3.846 5 N -0.559 5.559 6 C -0.258 4.258 7 H 0.084 0.916 8 C -0.048 4.048 9 N -0.906 5.906 10 Si 0.970 3.030 11 H -0.266 1.266 12 H -0.305 1.305 13 H -0.295 1.295 14 C 0.412 3.588 15 N -0.503 5.503 16 C 0.022 3.978 17 C -0.164 4.164 18 C -0.181 4.181 19 C 0.166 3.834 20 N -0.860 5.860 21 H 0.048 0.952 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.241 0.759 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.397 0.603 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -8.732 3.789 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.167 4.167 4 C 0.029 3.971 5 N -0.278 5.278 6 C -0.387 4.387 7 H 0.102 0.898 8 C -0.244 4.244 9 N -0.552 5.552 10 Si 0.800 3.200 11 H -0.190 1.190 12 H -0.233 1.233 13 H -0.222 1.222 14 C 0.176 3.824 15 N -0.216 5.216 16 C -0.135 4.135 17 C -0.185 4.185 18 C -0.212 4.212 19 C 0.056 3.944 20 N -0.401 5.401 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.225 0.775 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.208 -8.481 3.342 9.195 hybrid contribution 1.135 1.048 -0.573 1.648 sum -0.072 -7.433 2.769 7.932 Atomic orbital electron populations 1.21740 0.95458 1.02021 1.01269 1.21446 0.96282 0.95260 1.02254 1.22052 0.97678 0.96902 1.00035 1.21036 0.92681 0.83259 1.00156 1.41571 1.75612 1.10222 1.00379 1.19572 1.32103 1.01615 0.85433 0.89789 1.25504 1.00936 0.98544 0.99397 1.69756 1.49675 1.11296 1.24481 0.85136 0.76812 0.77690 0.80320 1.19006 1.23285 1.22214 1.17225 0.87468 0.90723 0.86971 1.67311 1.35762 1.07233 1.11309 1.22134 0.97749 1.01254 0.92349 1.21668 0.94397 1.00782 1.01627 1.20858 1.00832 1.02481 0.97020 1.18973 0.89743 0.92207 0.93505 1.42015 1.20044 1.55153 1.22846 0.93322 0.91083 0.93643 0.91137 0.91707 0.94881 0.94243 0.91491 0.93409 0.94739 0.84706 0.84240 0.84907 0.77456 0.77519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.13 5.93 30.59 0.18 -2.95 16 3 C -0.13 -4.70 5.54 30.60 0.17 -4.53 16 4 C 0.15 6.04 5.65 86.38 0.49 6.52 16 5 N -0.56 -27.14 1.81 -517.35 -0.94 -28.08 16 6 C -0.26 -13.64 9.77 84.04 0.82 -12.82 16 7 H 0.08 4.28 7.84 -2.91 -0.02 4.26 16 8 C -0.05 -2.62 5.44 84.86 0.46 -2.16 16 9 N -0.91 -52.42 9.77 21.64 0.21 -52.21 16 10 Si 0.97 45.44 29.56 68.60 2.03 47.46 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 14 C 0.41 20.60 3.57 133.27 0.48 21.08 16 15 N -0.50 -26.24 9.83 -192.66 -1.89 -28.14 16 16 C 0.02 1.00 11.17 84.66 0.95 1.94 16 17 C -0.16 -6.50 10.10 22.38 0.23 -6.28 16 18 C -0.18 -7.30 10.04 22.57 0.23 -7.07 16 19 C 0.17 7.40 6.09 38.44 0.23 7.63 16 20 N -0.86 -32.22 9.07 -50.69 -0.46 -32.68 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 29 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 30 H 0.24 14.17 8.32 -92.71 -0.77 13.40 16 31 H 0.14 5.41 8.06 -2.91 -0.02 5.39 16 32 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 33 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.40 15.42 8.15 -92.71 -0.76 14.66 16 35 H 0.40 11.93 8.86 -92.71 -0.82 11.11 16 Total: -1.00 -65.03 295.02 3.40 -61.64 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.49 Total: 33.51 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.94 Total: -1.52 kcal Atomic # 7 Polarization: -138.02 SS G_CDS: -3.08 Total: -141.10 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -65.03 3.40 -61.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.722 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds