Wall clock time and date at job start Sun Mar 29 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 C 1.53002 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47418 * 180.02562 * 4 3 2 6 6 C 1.36895 * 119.99657 * 270.00250 * 5 4 3 7 7 H 1.08001 * 120.00427 * 141.45461 * 6 5 4 8 8 C 1.38822 * 119.99998 * 321.44413 * 6 5 4 9 9 N 1.31567 * 120.00251 * 338.90548 * 8 6 5 10 10 Si 1.86804 * 120.00104 * 158.90053 * 8 6 5 11 11 H 1.48498 * 109.47093 * 60.00164 * 10 8 6 12 12 H 1.48498 * 109.47122 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46905 * 300.00215 * 10 8 6 14 14 C 1.38865 * 120.00097 * 89.99497 * 5 4 3 15 15 C 1.39584 * 120.16561 * 351.00666 * 14 5 4 16 16 C 1.38566 * 117.89876 * 179.71480 * 15 14 5 17 17 C 1.50711 * 120.97353 * 180.27929 * 16 15 14 18 18 C 1.38815 * 118.05363 * 0.56774 * 16 15 14 19 19 N 1.31866 * 120.02896 * 359.68553 * 18 16 15 20 20 N 1.28351 * 122.28700 * 0.02562 * 19 18 16 21 21 H 1.09003 * 109.46871 * 299.99450 * 1 2 3 22 22 H 1.08988 * 109.47336 * 59.99791 * 1 2 3 23 23 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46871 * 240.00550 * 2 1 3 25 25 H 1.08992 * 109.47771 * 120.00447 * 2 1 3 26 26 H 1.09001 * 109.47455 * 299.99939 * 3 2 1 27 27 H 1.09003 * 109.46939 * 60.00592 * 3 2 1 28 28 H 1.09005 * 109.46953 * 300.00258 * 4 3 2 29 29 H 1.08995 * 109.47437 * 60.00068 * 4 3 2 30 30 H 0.96993 * 120.00109 * 179.97438 * 9 8 6 31 31 H 1.07998 * 121.04742 * 359.97438 * 15 14 5 32 32 H 1.09006 * 109.46819 * 270.29792 * 17 16 15 33 33 H 1.08999 * 109.47074 * 30.29707 * 17 16 15 34 34 H 1.08998 * 109.47192 * 150.30381 * 17 16 15 35 35 H 1.08003 * 119.98777 * 179.70386 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2859 3.4698 -1.1853 7 1 4.0376 4.5160 -1.2866 8 6 4.8361 2.7802 -2.2572 9 7 5.5123 1.6710 -2.0485 10 14 4.6165 3.4270 -3.9958 11 1 5.2120 4.7835 -4.0983 12 1 5.2936 2.5151 -4.9524 13 1 3.1687 3.4963 -4.3189 14 6 4.2902 3.4778 1.2029 15 6 3.8855 2.8974 2.4061 16 6 4.1458 3.5880 3.5789 17 6 3.7447 3.0228 4.9172 18 6 4.7813 4.8185 3.4846 19 7 5.1246 5.2952 2.3040 20 7 4.8921 4.6591 1.2137 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8898 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8901 28 1 3.9337 0.9286 0.8891 29 1 3.9330 0.9290 -0.8908 30 1 5.8964 1.1890 -2.7974 31 1 3.3891 1.9384 2.4228 32 1 2.7350 3.3521 5.1628 33 1 3.7714 1.9340 4.8744 34 1 4.4374 3.3736 5.6821 35 1 4.9951 5.3856 4.3786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129233.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:41 Heat of formation + Delta-G solvation = 47.261246 kcal Electronic energy + Delta-G solvation = -16692.658103 eV Core-core repulsion = 14111.827866 eV Total energy + Delta-G solvation = -2580.830238 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.76428 -36.94835 -34.29587 -33.43502 -32.30721 -29.90489 -28.33445 -27.40674 -24.79941 -23.69597 -22.15957 -20.90226 -20.39004 -17.71103 -16.20863 -15.87683 -15.39644 -14.86313 -14.68755 -14.13429 -13.61181 -13.50239 -13.01850 -12.75267 -12.51434 -12.18225 -12.11649 -11.82174 -11.67630 -11.46716 -11.12545 -10.75181 -10.69484 -10.42943 -10.38023 -10.07094 -9.82738 -9.59220 -8.90918 -8.71790 -8.34152 -6.98625 -6.39127 -3.96949 1.93035 2.32549 3.18992 3.20709 3.23543 4.00978 4.50029 4.67593 4.99400 5.27069 5.29768 5.35572 5.46076 5.47680 5.66325 5.70907 5.80391 5.82024 5.96652 6.07316 6.09299 6.17287 6.17923 6.27972 6.30312 6.43745 6.57067 6.78975 6.83603 7.04547 7.14001 7.23957 7.49831 8.02950 8.54940 9.11929 9.49020 10.22449 10.57509 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.010109 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.580603 B = 2769.220203 C = 4072.533413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.116 3.884 5 N -0.406 5.406 6 C -0.294 4.294 7 H 0.095 0.905 8 C 0.036 3.964 9 N -0.863 5.863 10 Si 0.922 3.078 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.311 3.689 15 C -0.214 4.214 16 C -0.056 4.056 17 C -0.105 4.105 18 C -0.088 4.088 19 N -0.203 5.203 20 N -0.313 5.313 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.271 0.729 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 -4.140 6.230 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.173 4.173 4 C -0.009 4.009 5 N -0.096 5.096 6 C -0.423 4.423 7 H 0.113 0.887 8 C -0.170 4.170 9 N -0.498 5.498 10 Si 0.748 3.252 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.068 3.932 15 C -0.249 4.249 16 C -0.066 4.066 17 C -0.162 4.162 18 C -0.259 4.259 19 N -0.047 5.047 20 N -0.172 5.172 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.205 -3.288 4.950 8.591 hybrid contribution -0.661 -0.996 0.091 1.199 sum -6.866 -4.284 5.041 9.534 Atomic orbital electron populations 1.21757 0.96380 1.00870 1.01641 1.21442 0.95256 0.97362 1.01768 1.22031 0.97350 0.95814 1.02075 1.21635 0.91587 0.83777 1.03856 1.42396 1.54975 1.10970 1.01276 1.19512 1.39524 0.97052 0.86236 0.88693 1.25481 0.93959 0.96697 1.00813 1.69984 1.29692 1.17644 1.32481 0.86058 0.78732 0.79158 0.81262 1.19383 1.20874 1.19772 1.20370 0.92557 0.93127 0.87132 1.21456 1.09039 1.02531 0.91891 1.20601 0.95872 0.94804 0.95310 1.20676 1.01364 1.00713 0.93483 1.23266 1.07932 0.96801 0.97869 1.72590 1.10624 1.26066 0.95414 1.73034 1.18269 1.07860 1.18011 0.93065 0.92857 0.93263 0.91960 0.92447 0.91479 0.92927 0.93197 0.87071 0.91924 0.85554 0.91243 0.91735 0.91480 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.74 5.93 -26.73 -0.16 -1.89 16 3 C -0.13 -2.39 5.43 -26.73 -0.15 -2.54 16 4 C 0.12 2.48 4.60 -4.04 -0.02 2.46 16 5 N -0.41 -10.14 2.61 -114.90 -0.30 -10.44 16 6 C -0.29 -7.87 8.87 -15.08 -0.13 -8.01 16 7 H 0.10 2.64 7.87 -52.49 -0.41 2.22 16 8 C 0.04 0.94 4.95 -17.45 -0.09 0.85 16 9 N -0.86 -22.83 11.52 55.49 0.64 -22.19 16 10 Si 0.92 20.16 29.60 -169.99 -5.03 15.13 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.31 7.68 7.37 -154.83 -1.14 6.54 16 15 C -0.21 -4.42 8.73 -38.96 -0.34 -4.76 16 16 C -0.06 -1.02 5.92 -104.28 -0.62 -1.64 16 17 C -0.10 -1.36 10.07 36.01 0.36 -0.99 16 18 C -0.09 -1.74 11.03 -17.32 -0.19 -1.93 16 19 N -0.20 -4.83 11.49 30.58 0.35 -4.48 16 20 N -0.31 -8.25 10.70 31.23 0.33 -7.91 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.05 0.93 7.60 -51.93 -0.39 0.53 16 28 H 0.05 1.01 6.63 -51.93 -0.34 0.67 16 29 H 0.11 2.61 5.58 -51.93 -0.29 2.32 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.13 2.32 6.13 -52.49 -0.32 2.00 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 35 H 0.14 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -29.40 293.45 -6.81 -36.21 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.12 Total: 2.65 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.10 Total: -13.39 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 1.02 Total: -45.03 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.40 -6.81 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129233.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.474 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds