Wall clock time and date at job start Sun Mar 29 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 C 1.53002 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47418 * 180.02562 * 4 3 2 6 6 C 1.36895 * 119.99657 * 270.00250 * 5 4 3 7 7 H 1.08001 * 120.00427 * 141.45461 * 6 5 4 8 8 C 1.38822 * 119.99998 * 321.44413 * 6 5 4 9 9 N 1.31567 * 120.00251 * 338.90548 * 8 6 5 10 10 Si 1.86804 * 120.00104 * 158.90053 * 8 6 5 11 11 H 1.48498 * 109.47093 * 60.00164 * 10 8 6 12 12 H 1.48498 * 109.47122 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46905 * 300.00215 * 10 8 6 14 14 C 1.38865 * 120.00097 * 89.99497 * 5 4 3 15 15 C 1.39584 * 120.16561 * 351.00666 * 14 5 4 16 16 C 1.38566 * 117.89876 * 179.71480 * 15 14 5 17 17 C 1.50711 * 120.97353 * 180.27929 * 16 15 14 18 18 C 1.38815 * 118.05363 * 0.56774 * 16 15 14 19 19 N 1.31866 * 120.02896 * 359.68553 * 18 16 15 20 20 N 1.28351 * 122.28700 * 0.02562 * 19 18 16 21 21 H 1.09003 * 109.46871 * 299.99450 * 1 2 3 22 22 H 1.08988 * 109.47336 * 59.99791 * 1 2 3 23 23 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46871 * 240.00550 * 2 1 3 25 25 H 1.08992 * 109.47771 * 120.00447 * 2 1 3 26 26 H 1.09001 * 109.47455 * 299.99939 * 3 2 1 27 27 H 1.09003 * 109.46939 * 60.00592 * 3 2 1 28 28 H 1.09005 * 109.46953 * 300.00258 * 4 3 2 29 29 H 1.08995 * 109.47437 * 60.00068 * 4 3 2 30 30 H 0.96993 * 120.00109 * 179.97438 * 9 8 6 31 31 H 1.07998 * 121.04742 * 359.97438 * 15 14 5 32 32 H 1.09006 * 109.46819 * 270.29792 * 17 16 15 33 33 H 1.08999 * 109.47074 * 30.29707 * 17 16 15 34 34 H 1.08998 * 109.47192 * 150.30381 * 17 16 15 35 35 H 1.08003 * 119.98777 * 179.70386 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2859 3.4698 -1.1853 7 1 4.0376 4.5160 -1.2866 8 6 4.8361 2.7802 -2.2572 9 7 5.5123 1.6710 -2.0485 10 14 4.6165 3.4270 -3.9958 11 1 5.2120 4.7835 -4.0983 12 1 5.2936 2.5151 -4.9524 13 1 3.1687 3.4963 -4.3189 14 6 4.2902 3.4778 1.2029 15 6 3.8855 2.8974 2.4061 16 6 4.1458 3.5880 3.5789 17 6 3.7447 3.0228 4.9172 18 6 4.7813 4.8185 3.4846 19 7 5.1246 5.2952 2.3040 20 7 4.8921 4.6591 1.2137 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8898 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8901 28 1 3.9337 0.9286 0.8891 29 1 3.9330 0.9290 -0.8908 30 1 5.8964 1.1890 -2.7974 31 1 3.3891 1.9384 2.4228 32 1 2.7350 3.3521 5.1628 33 1 3.7714 1.9340 4.8744 34 1 4.4374 3.3736 5.6821 35 1 4.9951 5.3856 4.3786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129233.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:41 Heat of formation + Delta-G solvation = 30.747689 kcal Electronic energy + Delta-G solvation = -16693.374185 eV Core-core repulsion = 14111.827866 eV Total energy + Delta-G solvation = -2581.546319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47857 -38.63420 -35.67360 -34.92856 -34.18112 -31.55499 -29.86993 -28.77328 -26.55403 -25.25865 -23.68865 -22.39761 -21.87161 -19.51733 -17.97638 -17.56318 -17.07512 -16.45618 -16.14559 -15.80024 -15.29428 -14.81780 -14.46177 -13.96486 -13.82840 -13.59945 -13.50591 -13.22911 -13.14213 -13.02525 -12.84112 -12.26917 -12.10677 -12.00339 -11.81714 -11.55204 -11.48250 -11.29535 -10.69321 -10.35492 -10.05451 -8.85480 -8.28475 -5.95962 0.30316 0.66152 1.39673 1.43807 1.49655 2.23690 2.76237 2.85433 3.19506 3.87015 4.02157 4.08617 4.11049 4.17086 4.26797 4.34730 4.36746 4.48960 4.76086 4.82364 4.85925 4.88221 4.98333 5.05312 5.16677 5.19542 5.27865 5.35832 5.42014 5.43260 5.43840 5.56275 5.74183 6.15350 6.66311 7.23988 7.60638 8.48024 8.65509 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.010109 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.580603 B = 2769.220203 C = 4072.533413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.121 3.879 5 N -0.430 5.430 6 C -0.315 4.315 7 H 0.069 0.931 8 C -0.001 4.001 9 N -0.891 5.891 10 Si 0.981 3.019 11 H -0.276 1.276 12 H -0.273 1.273 13 H -0.264 1.264 14 C 0.294 3.706 15 C -0.219 4.219 16 C -0.044 4.044 17 C -0.101 4.101 18 C -0.072 4.072 19 N -0.243 5.243 20 N -0.373 5.373 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.273 0.727 31 H 0.149 0.851 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 -5.117 8.589 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.159 4.159 4 C -0.003 4.003 5 N -0.124 5.124 6 C -0.445 4.445 7 H 0.086 0.914 8 C -0.203 4.203 9 N -0.527 5.527 10 Si 0.804 3.196 11 H -0.201 1.201 12 H -0.198 1.198 13 H -0.188 1.188 14 C 0.050 3.950 15 C -0.253 4.253 16 C -0.054 4.054 17 C -0.158 4.158 18 C -0.245 4.245 19 N -0.083 5.083 20 N -0.230 5.230 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.167 0.833 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.460 -4.240 7.321 11.279 hybrid contribution -0.241 -0.615 -0.321 0.734 sum -7.701 -4.855 7.000 11.483 Atomic orbital electron populations 1.21725 0.94461 1.02314 1.01746 1.21419 0.96855 0.94741 1.02282 1.21898 0.94849 0.98090 1.01076 1.21632 0.93625 0.82117 1.02884 1.42564 1.56899 1.12013 1.00902 1.19373 1.40674 0.96442 0.87982 0.91364 1.26157 0.93418 0.96979 1.03778 1.70060 1.30674 1.18675 1.33317 0.85186 0.79007 0.78154 0.77251 1.20131 1.19813 1.18834 1.20797 0.92571 0.93026 0.88561 1.21784 1.08744 1.03525 0.91288 1.21256 0.93305 0.93623 0.97214 1.20818 1.03127 1.01557 0.90257 1.24099 1.05193 0.97375 0.97873 1.72485 1.12343 1.27117 0.96383 1.72919 1.20773 1.09492 1.19796 0.92374 0.93401 0.91132 0.92513 0.90897 0.93657 0.92633 0.92450 0.89491 0.91780 0.83337 0.88869 0.90198 0.88928 0.79675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.11 -3.15 5.93 30.59 0.18 -2.97 16 3 C -0.12 -4.30 5.43 30.60 0.17 -4.14 16 4 C 0.12 5.29 4.60 86.38 0.40 5.69 16 5 N -0.43 -22.32 2.61 -517.44 -1.35 -23.68 16 6 C -0.32 -17.80 8.87 84.04 0.75 -17.06 16 7 H 0.07 4.08 7.87 -2.91 -0.02 4.06 16 8 C 0.00 -0.03 4.95 84.87 0.42 0.39 16 9 N -0.89 -48.81 11.52 21.65 0.25 -48.56 16 10 Si 0.98 42.80 29.60 68.60 2.03 44.83 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 14 C 0.29 14.81 7.37 133.17 0.98 15.79 16 15 C -0.22 -8.72 8.73 22.67 0.20 -8.52 16 16 C -0.04 -1.46 5.92 -19.64 -0.12 -1.57 16 17 C -0.10 -2.03 10.07 71.24 0.72 -1.32 16 18 C -0.07 -2.67 11.03 84.83 0.94 -1.73 16 19 N -0.24 -11.62 11.49 -57.16 -0.66 -12.28 16 20 N -0.37 -20.33 10.70 -55.10 -0.59 -20.92 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 1.92 7.60 -2.39 -0.02 1.90 16 28 H 0.06 2.33 6.63 -2.38 -0.02 2.31 16 29 H 0.09 4.24 5.58 -2.39 -0.01 4.22 16 30 H 0.27 14.02 8.31 -92.71 -0.77 13.24 16 31 H 0.15 5.12 6.13 -2.91 -0.02 5.10 16 32 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.08 1.45 8.11 -2.39 -0.02 1.43 16 34 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 35 H 0.19 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -68.07 293.45 6.09 -61.98 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.06 Total: 16.60 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 5.34 Total: -17.98 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -2.35 Total: -105.43 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -68.07 6.09 -61.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129233.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.732 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds