Wall clock time and date at job start Sun Mar 29 2020 22:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47257 * 2 1 4 4 C 1.52999 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47059 * 179.97438 * 4 3 2 6 6 C 1.36894 * 120.00033 * 269.99986 * 5 4 3 7 7 H 1.07998 * 119.99297 * 141.54491 * 6 5 4 8 8 C 1.38819 * 120.00360 * 321.53913 * 6 5 4 9 9 N 1.31565 * 120.00042 * 157.03805 * 8 6 5 10 10 Si 1.86796 * 120.00025 * 337.04737 * 8 6 5 11 11 H 1.48498 * 109.47494 * 95.56940 * 10 8 6 12 12 H 1.48508 * 109.47072 * 215.56609 * 10 8 6 13 13 H 1.48499 * 109.47455 * 335.56598 * 10 8 6 14 14 C 1.38819 * 119.99611 * 90.00389 * 5 4 3 15 15 C 1.39408 * 120.09886 * 170.60584 * 14 5 4 16 16 N 1.31928 * 119.88517 * 179.97438 * 15 14 5 17 17 C 1.32287 * 120.08711 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.89787 * 179.97438 * 17 16 15 19 19 C 1.38257 * 120.20229 * 359.97438 * 17 16 15 20 20 N 1.32180 * 120.11508 * 0.02562 * 19 17 16 21 21 H 1.09009 * 109.47102 * 59.99917 * 1 2 3 22 22 H 1.09000 * 109.47726 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47500 * 300.00663 * 1 2 3 24 24 H 1.09000 * 109.46922 * 239.99833 * 2 1 3 25 25 H 1.08996 * 109.46759 * 120.00020 * 2 1 3 26 26 H 1.09000 * 109.47291 * 60.00059 * 3 2 1 27 27 H 1.08996 * 109.47252 * 299.99717 * 3 2 1 28 28 H 1.09006 * 109.47123 * 59.99997 * 4 3 2 29 29 H 1.08999 * 109.47610 * 300.00312 * 4 3 2 30 30 H 0.96996 * 120.00192 * 180.02562 * 9 8 6 31 31 H 1.07997 * 120.05944 * 359.95769 * 15 14 5 32 32 H 1.08997 * 109.47660 * 89.99243 * 18 17 16 33 33 H 1.09000 * 109.47481 * 209.99635 * 18 17 16 34 34 H 1.09003 * 109.47069 * 329.99318 * 18 17 16 35 35 H 1.08001 * 119.94399 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2870 3.4683 -1.1858 7 1 4.0401 4.5147 -1.2878 8 6 4.8364 2.7770 -2.2570 9 7 4.6515 3.2118 -3.4849 10 14 5.8380 1.2295 -1.9551 11 1 4.9654 0.0376 -2.1067 12 1 6.9481 1.1585 -2.9389 13 1 6.3969 1.2620 -0.5797 14 6 4.2893 3.4787 1.2020 15 6 4.9349 4.7142 1.2121 16 7 5.1518 5.3332 2.3568 17 6 4.7579 4.7828 3.4934 18 6 5.0083 5.4934 4.7985 19 6 4.1173 3.5576 3.4876 20 7 3.8959 2.9304 2.3453 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 3.9337 0.9284 -0.8892 29 1 3.9330 0.9287 0.8908 30 1 5.0350 2.7286 -4.2334 31 1 5.2573 5.1637 0.2845 32 1 4.1614 6.1397 5.0287 33 1 5.1317 4.7588 5.5943 34 1 5.9131 6.0956 4.7165 35 1 3.7971 3.1122 4.4179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:47 Heat of formation + Delta-G solvation = 43.417522 kcal Electronic energy + Delta-G solvation = -16680.119473 eV Core-core repulsion = 14099.122559 eV Total energy + Delta-G solvation = -2580.996914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00742 -37.13105 -34.35906 -33.26146 -32.22627 -31.31464 -28.78473 -26.66909 -24.71039 -23.44443 -22.74805 -20.86196 -20.64763 -17.73857 -16.61845 -16.34538 -15.08016 -14.84210 -14.75751 -14.35712 -13.65598 -13.62588 -13.14726 -13.02505 -12.55311 -12.24459 -12.10448 -11.91127 -11.66782 -11.51234 -11.29349 -10.80680 -10.66146 -10.54620 -10.41836 -10.23202 -10.08565 -9.88380 -9.32466 -8.79935 -8.07626 -6.93989 -6.68198 -4.11881 1.94190 2.27614 2.96975 3.13174 3.19670 3.95501 4.13360 4.56158 4.86401 5.17207 5.24626 5.32795 5.39267 5.48987 5.56551 5.74423 5.84401 6.00636 6.03661 6.06946 6.10875 6.17442 6.19515 6.25975 6.34925 6.40722 6.46201 6.68142 6.74690 6.88302 7.23683 7.40296 7.89848 8.27159 8.35585 8.82621 9.00210 9.36424 10.40816 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.009920 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.129644 B = 2822.017139 C = 3874.114050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.111 3.889 5 N -0.430 5.430 6 C -0.323 4.323 7 H 0.107 0.893 8 C 0.069 3.931 9 N -0.846 5.846 10 Si 0.879 3.121 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.261 1.261 14 C 0.325 3.675 15 C -0.006 4.006 16 N -0.410 5.410 17 C -0.068 4.068 18 C -0.072 4.072 19 C 0.109 3.891 20 N -0.532 5.532 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.279 0.721 31 H 0.164 0.836 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -3.902 8.109 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.012 4.012 5 N -0.123 5.123 6 C -0.450 4.450 7 H 0.124 0.876 8 C -0.141 4.141 9 N -0.478 5.478 10 Si 0.705 3.295 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.185 1.185 14 C 0.084 3.916 15 C -0.180 4.180 16 N -0.124 5.124 17 C -0.209 4.209 18 C -0.131 4.131 19 C -0.055 4.055 20 N -0.257 5.257 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.181 0.819 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.859 -4.052 7.611 9.084 hybrid contribution 0.469 -0.821 -0.122 0.954 sum -2.389 -4.873 7.489 9.249 Atomic orbital electron populations 1.21736 0.96155 1.00862 1.01754 1.21473 0.95612 0.97447 1.01530 1.21849 0.95822 0.95952 1.02685 1.21700 0.94297 0.84224 1.00980 1.42536 1.56782 1.11330 1.01642 1.19014 1.42172 0.98420 0.85434 0.87563 1.25387 0.95665 0.98423 0.94621 1.69810 1.39493 1.40269 0.98275 0.86885 0.80545 0.82571 0.79460 1.19821 1.21081 1.18519 1.19608 0.92778 0.92599 0.86607 1.22956 1.03572 0.94864 0.96617 1.67899 1.14057 1.32490 0.97960 1.21318 1.08111 0.96855 0.94587 1.20240 1.01532 0.99200 0.92087 1.22884 0.94681 0.92261 0.95679 1.67917 1.24530 1.35651 0.97575 0.92803 0.93283 0.92922 0.92375 0.92267 0.91738 0.91361 0.91816 0.91322 0.91047 0.81918 0.92429 0.92172 0.91942 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.12 -2.34 5.54 -26.73 -0.15 -2.49 16 4 C 0.11 2.37 4.18 -4.04 -0.02 2.35 16 5 N -0.43 -10.16 2.25 -114.93 -0.26 -10.42 16 6 C -0.32 -8.25 8.68 -15.08 -0.13 -8.38 16 7 H 0.11 2.89 7.43 -52.49 -0.39 2.50 16 8 C 0.07 1.76 5.28 -17.45 -0.09 1.67 16 9 N -0.85 -22.60 13.96 55.49 0.77 -21.82 16 10 Si 0.88 20.00 25.13 -169.99 -4.27 15.73 16 11 H -0.27 -5.89 6.68 56.52 0.38 -5.51 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.26 -6.13 7.11 56.52 0.40 -5.72 16 14 C 0.33 7.51 7.30 -154.79 -1.13 6.38 16 15 C -0.01 -0.13 10.43 -17.08 -0.18 -0.31 16 16 N -0.41 -8.77 10.41 -9.07 -0.09 -8.87 16 17 C -0.07 -1.28 6.78 -82.39 -0.56 -1.83 16 18 C -0.07 -1.01 10.19 36.00 0.37 -0.64 16 19 C 0.11 2.01 10.87 -17.39 -0.19 1.82 16 20 N -0.53 -11.37 9.41 -12.24 -0.12 -11.48 16 21 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.40 3.44 -51.93 -0.18 1.22 16 29 H 0.07 1.42 7.55 -51.93 -0.39 1.03 16 30 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.16 3.71 6.74 -52.49 -0.35 3.35 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -27.46 290.03 -6.58 -34.04 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.12 Total: 3.51 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.87 Total: -5.06 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.31 Total: -52.59 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.27 Total: 15.73 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.46 -6.58 -34.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.459 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds