Wall clock time and date at job start Sun Mar 29 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47257 * 2 1 4 4 C 1.52999 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47059 * 179.97438 * 4 3 2 6 6 C 1.36894 * 120.00033 * 269.99986 * 5 4 3 7 7 H 1.07998 * 119.99297 * 141.54491 * 6 5 4 8 8 C 1.38819 * 120.00360 * 321.53913 * 6 5 4 9 9 N 1.31565 * 120.00042 * 157.03805 * 8 6 5 10 10 Si 1.86796 * 120.00025 * 337.04737 * 8 6 5 11 11 H 1.48498 * 109.47494 * 95.56940 * 10 8 6 12 12 H 1.48508 * 109.47072 * 215.56609 * 10 8 6 13 13 H 1.48499 * 109.47455 * 335.56598 * 10 8 6 14 14 C 1.38819 * 119.99611 * 90.00389 * 5 4 3 15 15 C 1.39408 * 120.09886 * 170.60584 * 14 5 4 16 16 N 1.31928 * 119.88517 * 179.97438 * 15 14 5 17 17 C 1.32287 * 120.08711 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.89787 * 179.97438 * 17 16 15 19 19 C 1.38257 * 120.20229 * 359.97438 * 17 16 15 20 20 N 1.32180 * 120.11508 * 0.02562 * 19 17 16 21 21 H 1.09009 * 109.47102 * 59.99917 * 1 2 3 22 22 H 1.09000 * 109.47726 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47500 * 300.00663 * 1 2 3 24 24 H 1.09000 * 109.46922 * 239.99833 * 2 1 3 25 25 H 1.08996 * 109.46759 * 120.00020 * 2 1 3 26 26 H 1.09000 * 109.47291 * 60.00059 * 3 2 1 27 27 H 1.08996 * 109.47252 * 299.99717 * 3 2 1 28 28 H 1.09006 * 109.47123 * 59.99997 * 4 3 2 29 29 H 1.08999 * 109.47610 * 300.00312 * 4 3 2 30 30 H 0.96996 * 120.00192 * 180.02562 * 9 8 6 31 31 H 1.07997 * 120.05944 * 359.95769 * 15 14 5 32 32 H 1.08997 * 109.47660 * 89.99243 * 18 17 16 33 33 H 1.09000 * 109.47481 * 209.99635 * 18 17 16 34 34 H 1.09003 * 109.47069 * 329.99318 * 18 17 16 35 35 H 1.08001 * 119.94399 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2870 3.4683 -1.1858 7 1 4.0401 4.5147 -1.2878 8 6 4.8364 2.7770 -2.2570 9 7 4.6515 3.2118 -3.4849 10 14 5.8380 1.2295 -1.9551 11 1 4.9654 0.0376 -2.1067 12 1 6.9481 1.1585 -2.9389 13 1 6.3969 1.2620 -0.5797 14 6 4.2893 3.4787 1.2020 15 6 4.9349 4.7142 1.2121 16 7 5.1518 5.3332 2.3568 17 6 4.7579 4.7828 3.4934 18 6 5.0083 5.4934 4.7985 19 6 4.1173 3.5576 3.4876 20 7 3.8959 2.9304 2.3453 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 3.9337 0.9284 -0.8892 29 1 3.9330 0.9287 0.8908 30 1 5.0350 2.7286 -4.2334 31 1 5.2573 5.1637 0.2845 32 1 4.1614 6.1397 5.0287 33 1 5.1317 4.7588 5.5943 34 1 5.9131 6.0956 4.7165 35 1 3.7971 3.1122 4.4179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:46 Heat of formation + Delta-G solvation = 27.546289 kcal Electronic energy + Delta-G solvation = -16680.807701 eV Core-core repulsion = 14099.122559 eV Total energy + Delta-G solvation = -2581.685142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68058 -38.80364 -35.75548 -34.99564 -34.03114 -32.80385 -30.20898 -28.27393 -26.32378 -25.08500 -24.27315 -22.42984 -22.09837 -19.54741 -18.32703 -18.12863 -16.80011 -16.35770 -16.25665 -15.97997 -15.20170 -15.02393 -14.84725 -14.66681 -13.92968 -13.74979 -13.42771 -13.25982 -13.09246 -12.95003 -12.93071 -12.31985 -12.19478 -12.15237 -11.91317 -11.79903 -11.76853 -11.46538 -11.04978 -10.60197 -9.73286 -8.67408 -8.62459 -6.08304 0.31305 0.59557 1.15682 1.28936 1.36987 2.09259 2.41985 2.72354 3.15068 3.67841 3.71598 3.93851 4.01181 4.06321 4.25425 4.33289 4.41902 4.54088 4.56838 4.77407 4.84940 4.89024 4.93962 4.97089 5.05887 5.12375 5.21667 5.28599 5.35609 5.44485 5.50978 5.70752 5.94430 6.47959 6.62623 7.02528 7.21291 7.54847 8.51412 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.009920 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.129644 B = 2822.017139 C = 3874.114050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.114 4.114 4 C 0.112 3.888 5 N -0.451 5.451 6 C -0.323 4.323 7 H 0.071 0.929 8 C 0.031 3.969 9 N -0.890 5.890 10 Si 0.932 3.068 11 H -0.251 1.251 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.314 3.686 15 C -0.037 4.037 16 N -0.425 5.425 17 C -0.054 4.054 18 C -0.071 4.071 19 C 0.111 3.889 20 N -0.533 5.533 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.283 0.717 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -5.401 11.300 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.153 4.153 4 C -0.011 4.011 5 N -0.147 5.147 6 C -0.452 4.452 7 H 0.089 0.911 8 C -0.175 4.175 9 N -0.525 5.525 10 Si 0.757 3.243 11 H -0.176 1.176 12 H -0.208 1.208 13 H -0.197 1.197 14 C 0.075 3.925 15 C -0.207 4.207 16 N -0.140 5.140 17 C -0.197 4.197 18 C -0.129 4.129 19 C -0.054 4.054 20 N -0.257 5.257 21 H 0.066 0.934 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.236 -5.548 10.785 12.553 hybrid contribution 0.573 -0.188 -0.744 0.958 sum -2.662 -5.736 10.041 11.867 Atomic orbital electron populations 1.21710 0.94399 1.02387 1.01666 1.21467 0.97145 0.94809 1.02241 1.21750 0.94310 0.98173 1.01066 1.21764 0.95648 0.82953 1.00696 1.42476 1.58958 1.12179 1.01077 1.18707 1.42374 0.97311 0.86762 0.91110 1.25897 0.96249 1.01126 0.94194 1.69876 1.41359 1.42203 0.99035 0.86044 0.79420 0.80385 0.78436 1.17637 1.20789 1.19660 1.19706 0.93026 0.92524 0.87232 1.22752 1.05502 0.95597 0.96878 1.67944 1.14604 1.32992 0.98428 1.22320 1.05076 0.96854 0.95471 1.20419 1.02317 1.00140 0.90056 1.23775 0.93172 0.92044 0.96366 1.67990 1.23943 1.35993 0.97818 0.93400 0.90922 0.92578 0.92329 0.90840 0.92432 0.93784 0.92673 0.90660 0.90687 0.83764 0.90554 0.88489 0.91901 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.12 -3.44 5.93 30.59 0.18 -3.26 16 3 C -0.11 -4.28 5.54 30.59 0.17 -4.11 16 4 C 0.11 4.76 4.18 86.38 0.36 5.13 16 5 N -0.45 -21.92 2.25 -517.52 -1.17 -23.09 16 6 C -0.32 -17.49 8.68 84.04 0.73 -16.76 16 7 H 0.07 4.20 7.43 -2.91 -0.02 4.18 16 8 C 0.03 1.65 5.28 84.87 0.45 2.10 16 9 N -0.89 -49.69 13.96 21.65 0.30 -49.39 16 10 Si 0.93 42.00 25.13 68.60 1.72 43.73 16 11 H -0.25 -10.37 6.68 99.48 0.66 -9.70 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.31 14.64 7.30 133.08 0.97 15.61 16 15 C -0.04 -1.72 10.43 84.96 0.89 -0.83 16 16 N -0.43 -17.87 10.41 -182.61 -1.90 -19.78 16 17 C -0.05 -1.86 6.78 42.49 0.29 -1.57 16 18 C -0.07 -1.65 10.19 71.23 0.73 -0.92 16 19 C 0.11 3.66 10.87 84.64 0.92 4.58 16 20 N -0.53 -21.77 9.41 -192.63 -1.81 -23.58 16 21 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 2.41 3.44 -2.38 -0.01 2.40 16 29 H 0.08 3.03 7.55 -2.39 -0.02 3.02 16 30 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.15 7.12 6.74 -2.91 -0.02 7.10 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.20 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -61.76 290.03 4.56 -57.19 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.02 Total: 17.74 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 6.39 Total: -2.82 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -4.58 Total: -115.84 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.72 Total: 43.73 kcal Total: -61.76 4.56 -57.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.741 kcal (2) G-P(sol) polarization free energy of solvation -61.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds