Wall clock time and date at job start Sun Mar 29 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46851 * 2 1 4 4 C 1.53003 * 109.46755 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46706 * 180.02562 * 4 3 2 6 6 C 1.36916 * 120.00130 * 269.99712 * 5 4 3 7 7 H 1.08003 * 119.99767 * 141.17668 * 6 5 4 8 8 C 1.38813 * 120.00000 * 321.18512 * 6 5 4 9 9 N 1.31568 * 120.00001 * 159.47034 * 8 6 5 10 10 Si 1.86803 * 119.99964 * 339.45563 * 8 6 5 11 11 H 1.48507 * 109.46544 * 95.30432 * 10 8 6 12 12 H 1.48495 * 109.47221 * 215.29961 * 10 8 6 13 13 H 1.48498 * 109.47219 * 335.30486 * 10 8 6 14 14 C 1.38872 * 119.99689 * 90.00383 * 5 4 3 15 15 C 1.38922 * 119.67282 * 186.83300 * 14 5 4 16 16 C 1.39139 * 118.99912 * 179.72440 * 15 14 5 17 17 N 1.39211 * 120.82489 * 180.25700 * 16 15 14 18 18 C 1.39681 * 118.35448 * 0.27475 * 16 15 14 19 19 C 1.37824 * 119.24362 * 0.02562 * 18 16 15 20 20 N 1.32007 * 120.94917 * 359.97438 * 19 18 16 21 21 H 1.09005 * 109.47199 * 299.99236 * 1 2 3 22 22 H 1.08998 * 109.47777 * 59.99339 * 1 2 3 23 23 H 1.09007 * 109.47285 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47199 * 240.00764 * 2 1 3 25 25 H 1.08998 * 109.47777 * 120.00661 * 2 1 3 26 26 H 1.08998 * 109.46758 * 60.00769 * 3 2 1 27 27 H 1.08997 * 109.47539 * 300.00306 * 3 2 1 28 28 H 1.08998 * 109.46958 * 60.00771 * 4 3 2 29 29 H 1.08996 * 109.47447 * 299.99848 * 4 3 2 30 30 H 0.96997 * 119.99883 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.50187 * 359.97438 * 15 14 5 32 32 H 0.97002 * 119.99606 * 354.89516 * 17 16 15 33 33 H 0.96995 * 119.99948 * 174.90243 * 17 16 15 34 34 H 1.07997 * 120.37807 * 179.97438 * 18 16 15 35 35 H 1.08008 * 119.52775 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2859 3.4700 -1.1854 7 1 4.0333 4.5150 -1.2880 8 6 4.8413 2.7819 -2.2555 9 7 4.6970 3.2420 -3.4796 10 14 5.7937 1.2028 -1.9573 11 1 4.8914 0.0380 -2.1430 12 1 6.9202 1.1148 -2.9209 13 1 6.3265 1.2003 -0.5712 14 6 4.2902 3.4777 1.2030 15 6 4.6153 4.8283 1.2001 16 6 4.8392 5.4709 2.4138 17 7 5.1620 6.8244 2.4554 18 6 4.7324 4.7241 3.5893 19 6 4.4119 3.3859 3.5102 20 7 4.2054 2.8052 2.3428 21 1 -0.3634 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6766 1.9562 0.8901 27 1 1.6765 1.9564 -0.8899 28 1 3.9328 0.9289 -0.8909 29 1 3.9337 0.9286 0.8891 30 1 5.0848 2.7609 -4.2274 31 1 4.6892 5.3724 0.2701 32 1 5.3061 7.3142 1.6307 33 1 5.2429 7.2776 3.3092 34 1 4.8998 5.1897 4.5493 35 1 4.3285 2.8040 4.4163 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:35 Heat of formation + Delta-G solvation = 38.530782 kcal Electronic energy + Delta-G solvation = -16704.905402 eV Core-core repulsion = 14123.696583 eV Total energy + Delta-G solvation = -2581.208819 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.23809 -36.74145 -34.50092 -34.00049 -32.03877 -29.73136 -28.85564 -27.75034 -24.71845 -23.21443 -22.03899 -20.72077 -20.29876 -17.52346 -16.70688 -16.35632 -15.46239 -14.80021 -14.66784 -14.42320 -13.90136 -13.57536 -13.13763 -12.92323 -12.70548 -12.67835 -12.21782 -11.87207 -11.52515 -11.26202 -10.78289 -10.72255 -10.60693 -10.51792 -10.28408 -9.97401 -9.73062 -9.17058 -8.61858 -8.35751 -7.30752 -6.73614 -6.44277 -3.92711 2.39700 2.64376 3.11243 3.26284 3.35589 4.15422 4.25484 4.55920 4.81178 5.09091 5.41131 5.45043 5.52842 5.58414 5.88907 6.01355 6.14826 6.16664 6.23117 6.29463 6.31631 6.41049 6.49223 6.56353 6.62180 6.85498 6.97633 6.99668 7.10600 7.33591 7.65806 8.00565 8.17824 8.25798 8.60588 8.99644 9.26290 9.71838 10.65949 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.010322 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.898045 B = 2711.890860 C = 3694.132041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.114 3.886 5 N -0.453 5.453 6 C -0.312 4.312 7 H 0.101 0.899 8 C 0.062 3.938 9 N -0.866 5.866 10 Si 0.880 3.120 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.261 1.261 14 C 0.416 3.584 15 C -0.311 4.311 16 C 0.273 3.727 17 N -0.876 5.876 18 C -0.345 4.345 19 C 0.177 3.823 20 N -0.595 5.595 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.274 0.726 31 H 0.127 0.873 32 H 0.395 0.605 33 H 0.391 0.609 34 H 0.108 0.892 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 -0.533 8.649 8.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.010 4.010 5 N -0.147 5.147 6 C -0.440 4.440 7 H 0.119 0.881 8 C -0.145 4.145 9 N -0.500 5.500 10 Si 0.708 3.292 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.185 1.185 14 C 0.179 3.821 15 C -0.342 4.342 16 C 0.162 3.838 17 N -0.416 5.416 18 C -0.375 4.375 19 C 0.015 3.985 20 N -0.317 5.317 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.223 0.777 33 H 0.219 0.781 34 H 0.126 0.874 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.554 -1.608 8.065 8.611 hybrid contribution 0.863 0.566 0.003 1.033 sum -1.691 -1.042 8.069 8.309 Atomic orbital electron populations 1.21738 0.96280 1.00780 1.01695 1.21476 0.95467 0.97602 1.01542 1.21874 0.96392 0.95709 1.02360 1.21587 0.93638 0.84732 1.01012 1.42450 1.59047 1.11383 1.01869 1.18899 1.40913 0.98113 0.86103 0.88127 1.25357 0.95965 0.98394 0.94756 1.69799 1.41590 1.40444 0.98215 0.86879 0.80122 0.83051 0.79195 1.20129 1.21741 1.18501 1.18303 0.89282 0.88426 0.86117 1.20634 1.21403 0.95509 0.96703 1.17660 0.88799 0.83737 0.93568 1.42276 1.81028 1.08049 1.10211 1.20856 1.23726 0.96719 0.96195 1.21786 0.91247 0.91176 0.94258 1.67194 1.27847 1.39180 0.97482 0.92967 0.92845 0.93351 0.92403 0.92240 0.92170 0.91500 0.92375 0.90788 0.91558 0.85490 0.77707 0.78135 0.87436 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.15 0.37 -1.66 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.12 -2.46 5.54 -26.73 -0.15 -2.60 16 4 C 0.11 2.56 4.27 -4.04 -0.02 2.54 16 5 N -0.45 -11.25 2.26 -115.09 -0.26 -11.51 16 6 C -0.31 -8.44 9.02 -15.07 -0.14 -8.58 16 7 H 0.10 2.88 6.80 -52.48 -0.36 2.52 16 8 C 0.06 1.68 5.33 -17.45 -0.09 1.59 16 9 N -0.87 -24.43 13.96 55.49 0.77 -23.66 16 10 Si 0.88 21.32 24.98 -169.99 -4.25 17.07 16 11 H -0.27 -6.33 6.69 56.52 0.38 -5.96 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.26 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.42 9.88 7.32 -155.04 -1.14 8.74 16 15 C -0.31 -6.91 9.20 -38.99 -0.36 -7.27 16 16 C 0.27 5.12 6.81 -83.64 -0.57 4.55 16 17 N -0.88 -12.44 9.07 32.52 0.30 -12.15 16 18 C -0.34 -6.10 9.99 -39.19 -0.39 -6.49 16 19 C 0.18 3.30 11.16 -17.63 -0.20 3.11 16 20 N -0.59 -13.11 9.07 -12.52 -0.11 -13.23 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.06 1.36 3.29 -51.93 -0.17 1.19 16 29 H 0.07 1.63 7.27 -51.93 -0.38 1.25 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.13 2.92 6.35 -52.49 -0.33 2.59 16 32 H 0.40 5.15 8.86 -40.82 -0.36 4.79 16 33 H 0.39 4.42 8.86 -40.82 -0.36 4.06 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 287.59 15.07 4.33 4.33 Total: -1.00 -29.45 287.59 -6.98 -36.43 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.92 Total: 10.93 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.84 Total: -8.22 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.70 Total: -60.54 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.25 Total: 17.07 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.45 -6.98 -36.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.960 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds