Wall clock time and date at job start Sun Mar 29 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46851 * 2 1 4 4 C 1.53003 * 109.46755 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46706 * 180.02562 * 4 3 2 6 6 C 1.36916 * 120.00130 * 269.99712 * 5 4 3 7 7 H 1.08003 * 119.99767 * 141.17668 * 6 5 4 8 8 C 1.38813 * 120.00000 * 321.18512 * 6 5 4 9 9 N 1.31568 * 120.00001 * 159.47034 * 8 6 5 10 10 Si 1.86803 * 119.99964 * 339.45563 * 8 6 5 11 11 H 1.48507 * 109.46544 * 95.30432 * 10 8 6 12 12 H 1.48495 * 109.47221 * 215.29961 * 10 8 6 13 13 H 1.48498 * 109.47219 * 335.30486 * 10 8 6 14 14 C 1.38872 * 119.99689 * 90.00383 * 5 4 3 15 15 C 1.38922 * 119.67282 * 186.83300 * 14 5 4 16 16 C 1.39139 * 118.99912 * 179.72440 * 15 14 5 17 17 N 1.39211 * 120.82489 * 180.25700 * 16 15 14 18 18 C 1.39681 * 118.35448 * 0.27475 * 16 15 14 19 19 C 1.37824 * 119.24362 * 0.02562 * 18 16 15 20 20 N 1.32007 * 120.94917 * 359.97438 * 19 18 16 21 21 H 1.09005 * 109.47199 * 299.99236 * 1 2 3 22 22 H 1.08998 * 109.47777 * 59.99339 * 1 2 3 23 23 H 1.09007 * 109.47285 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47199 * 240.00764 * 2 1 3 25 25 H 1.08998 * 109.47777 * 120.00661 * 2 1 3 26 26 H 1.08998 * 109.46758 * 60.00769 * 3 2 1 27 27 H 1.08997 * 109.47539 * 300.00306 * 3 2 1 28 28 H 1.08998 * 109.46958 * 60.00771 * 4 3 2 29 29 H 1.08996 * 109.47447 * 299.99848 * 4 3 2 30 30 H 0.96997 * 119.99883 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.50187 * 359.97438 * 15 14 5 32 32 H 0.97002 * 119.99606 * 354.89516 * 17 16 15 33 33 H 0.96995 * 119.99948 * 174.90243 * 17 16 15 34 34 H 1.07997 * 120.37807 * 179.97438 * 18 16 15 35 35 H 1.08008 * 119.52775 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2859 3.4700 -1.1854 7 1 4.0333 4.5150 -1.2880 8 6 4.8413 2.7819 -2.2555 9 7 4.6970 3.2420 -3.4796 10 14 5.7937 1.2028 -1.9573 11 1 4.8914 0.0380 -2.1430 12 1 6.9202 1.1148 -2.9209 13 1 6.3265 1.2003 -0.5712 14 6 4.2902 3.4777 1.2030 15 6 4.6153 4.8283 1.2001 16 6 4.8392 5.4709 2.4138 17 7 5.1620 6.8244 2.4554 18 6 4.7324 4.7241 3.5893 19 6 4.4119 3.3859 3.5102 20 7 4.2054 2.8052 2.3428 21 1 -0.3634 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6766 1.9562 0.8901 27 1 1.6765 1.9564 -0.8899 28 1 3.9328 0.9289 -0.8909 29 1 3.9337 0.9286 0.8891 30 1 5.0848 2.7609 -4.2274 31 1 4.6892 5.3724 0.2701 32 1 5.3061 7.3142 1.6307 33 1 5.2429 7.2776 3.3092 34 1 4.8998 5.1897 4.5493 35 1 4.3285 2.8040 4.4163 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:35 Heat of formation + Delta-G solvation = 19.775800 kcal Electronic energy + Delta-G solvation = -16705.718679 eV Core-core repulsion = 14123.696583 eV Total energy + Delta-G solvation = -2582.022096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87337 -38.41200 -35.91994 -35.55232 -33.98286 -31.27414 -30.36857 -29.34431 -26.55835 -24.74881 -23.63250 -22.14583 -21.94568 -19.33229 -18.36485 -17.96529 -17.16722 -16.31893 -16.23315 -15.96889 -15.49749 -15.27903 -14.66789 -14.48457 -14.37704 -14.28192 -13.80817 -13.40304 -13.19590 -12.91979 -12.36420 -12.31194 -12.05670 -12.02520 -11.86347 -11.73092 -11.42719 -10.97650 -10.48836 -9.99027 -8.74241 -8.53624 -8.47734 -5.98956 0.80332 1.04631 1.19387 1.31588 1.41041 2.17508 2.64124 2.85470 3.15208 3.42046 3.99476 4.02675 4.12180 4.28785 4.37993 4.56812 4.58073 4.70220 4.80929 4.84645 4.92329 4.96986 5.09222 5.10590 5.28609 5.37724 5.39219 5.47831 5.52022 5.65577 5.87330 6.07579 6.62561 6.73233 7.09773 7.19148 7.35013 7.90921 8.64637 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.010322 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.898045 B = 2711.890860 C = 3694.132041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.114 4.114 4 C 0.115 3.885 5 N -0.477 5.477 6 C -0.308 4.308 7 H 0.066 0.934 8 C 0.020 3.980 9 N -0.908 5.908 10 Si 0.935 3.065 11 H -0.255 1.255 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.399 3.601 15 C -0.343 4.343 16 C 0.280 3.720 17 N -0.856 5.856 18 C -0.331 4.331 19 C 0.170 3.830 20 N -0.612 5.612 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.278 0.722 31 H 0.104 0.896 32 H 0.402 0.598 33 H 0.411 0.589 34 H 0.149 0.851 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -1.182 11.547 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.153 4.153 4 C -0.008 4.008 5 N -0.175 5.175 6 C -0.437 4.437 7 H 0.084 0.916 8 C -0.183 4.183 9 N -0.546 5.546 10 Si 0.761 3.239 11 H -0.181 1.181 12 H -0.214 1.214 13 H -0.197 1.197 14 C 0.164 3.836 15 C -0.375 4.375 16 C 0.165 3.835 17 N -0.396 5.396 18 C -0.360 4.360 19 C 0.010 3.990 20 N -0.335 5.335 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.230 0.770 33 H 0.241 0.759 34 H 0.167 0.833 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.520 -2.210 11.030 11.528 hybrid contribution 0.866 0.989 -0.621 1.454 sum -1.653 -1.221 10.410 10.611 Atomic orbital electron populations 1.21708 0.94322 1.02389 1.01671 1.21470 0.97180 0.94884 1.02165 1.21766 0.94775 0.97998 1.00738 1.21631 0.95102 0.83676 1.00415 1.42412 1.61390 1.12186 1.01512 1.18644 1.40535 0.96998 0.87478 0.91603 1.25887 0.96694 1.01300 0.94409 1.69875 1.43475 1.42311 0.98945 0.85998 0.79099 0.80665 0.78089 1.18113 1.21447 1.19726 1.18553 0.89672 0.88898 0.86468 1.20656 1.23782 0.95578 0.97467 1.17789 0.87491 0.85411 0.92762 1.42230 1.79133 1.06459 1.11801 1.21308 1.21075 0.96337 0.97264 1.22560 0.89736 0.92278 0.94405 1.67230 1.28731 1.39719 0.97854 0.92540 0.93394 0.90893 0.92485 0.90861 0.92794 0.93965 0.93535 0.90379 0.91281 0.87791 0.76956 0.75860 0.83321 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.12 -3.69 5.93 30.59 0.18 -3.51 16 3 C -0.11 -4.54 5.54 30.60 0.17 -4.37 16 4 C 0.11 5.21 4.27 86.38 0.37 5.58 16 5 N -0.48 -24.44 2.26 -518.02 -1.17 -25.61 16 6 C -0.31 -17.53 9.02 84.04 0.76 -16.78 16 7 H 0.07 4.09 6.80 -2.91 -0.02 4.07 16 8 C 0.02 1.10 5.33 84.87 0.45 1.55 16 9 N -0.91 -53.47 13.96 21.65 0.30 -53.17 16 10 Si 0.94 45.05 24.98 68.60 1.71 46.77 16 11 H -0.26 -11.38 6.69 99.48 0.67 -10.71 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 14 C 0.40 19.18 7.32 132.99 0.97 20.15 16 15 C -0.34 -15.47 9.20 22.65 0.21 -15.26 16 16 C 0.28 9.88 6.81 38.54 0.26 10.14 16 17 N -0.86 -21.99 9.07 -51.04 -0.46 -22.45 16 18 C -0.33 -10.34 9.99 22.52 0.23 -10.12 16 19 C 0.17 5.75 11.16 84.57 0.94 6.70 16 20 N -0.61 -26.18 9.07 -193.52 -1.75 -27.94 16 21 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 2.19 3.29 -2.39 -0.01 2.18 16 29 H 0.08 3.41 7.27 -2.39 -0.02 3.40 16 30 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.10 5.08 6.35 -2.91 -0.02 5.06 16 32 H 0.40 9.79 8.86 -92.71 -0.82 8.97 16 33 H 0.41 7.62 8.86 -92.71 -0.82 6.80 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.18 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -66.24 287.59 3.30 -62.93 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.58 Total: 28.34 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.26 Total: -8.87 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -3.09 Total: -129.16 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.71 Total: 46.77 kcal Total: -66.24 3.30 -62.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.709 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds