Wall clock time and date at job start Sun Mar 29 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34959 * 125.97566 * 2 1 4 4 C 1.35243 * 107.86731 * 180.02562 * 3 2 1 5 5 C 1.40430 * 107.85837 * 359.97438 * 4 3 2 6 6 N 1.39988 * 125.97149 * 179.97438 * 5 4 3 7 7 C 1.46507 * 120.00398 * 0.02562 * 6 5 4 8 8 H 1.08993 * 109.40702 * 324.85376 * 7 6 5 9 9 C 1.52955 * 109.35689 * 84.67871 * 7 6 5 10 10 C 1.53661 * 109.32473 * 183.80059 * 9 7 6 11 11 C 1.51270 * 108.30723 * 305.14049 * 10 9 7 12 12 C 1.37879 * 120.84356 * 231.37849 * 11 10 9 13 13 N 1.31514 * 119.99350 * 180.28098 * 12 11 10 14 14 Si 1.86798 * 120.00608 * 0.28149 * 12 11 10 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 11 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 11 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 11 18 18 C 1.51265 * 118.30026 * 51.65651 * 11 10 9 19 19 C 1.52959 * 109.41143 * 204.99758 * 7 6 5 20 20 N 1.31215 * 108.05091 * 0.24196 * 5 4 3 21 21 H 1.09004 * 109.47515 * 90.00153 * 1 2 3 22 22 H 1.09001 * 109.47390 * 209.99979 * 1 2 3 23 23 H 1.09002 * 109.47311 * 329.99788 * 1 2 3 24 24 H 1.08004 * 126.06257 * 0.02562 * 3 2 1 25 25 H 1.07998 * 126.07406 * 180.02562 * 4 3 2 26 26 H 0.97001 * 120.00143 * 179.97438 * 6 5 4 27 27 H 1.09005 * 109.48318 * 303.65410 * 9 7 6 28 28 H 1.09000 * 109.48301 * 63.67638 * 9 7 6 29 29 H 1.08998 * 109.68928 * 185.52122 * 10 9 7 30 30 H 1.09001 * 109.78021 * 64.81103 * 10 9 7 31 31 H 0.97005 * 119.99661 * 179.97438 * 13 12 11 32 32 H 1.08996 * 109.62656 * 68.11897 * 18 11 10 33 33 H 1.09005 * 109.62271 * 188.68416 * 18 11 10 34 34 H 1.09003 * 109.48108 * 56.38751 * 19 7 6 35 35 H 1.08995 * 109.49355 * 296.34781 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0922 0.0000 4 6 3.5432 0.6718 -0.0006 5 6 3.5371 -0.7325 -0.0003 6 7 4.6664 -1.5597 -0.0013 7 6 6.0072 -0.9690 -0.0021 8 1 5.9993 -0.0537 -0.5937 9 6 6.4181 -0.6425 1.4346 10 6 7.7830 0.0634 1.4251 11 6 8.7658 -0.8126 0.6800 12 6 9.9814 -1.1451 1.2392 13 7 10.8255 -1.9033 0.5742 14 14 10.4294 -0.5189 2.9411 15 1 11.1231 0.7885 2.8208 16 1 9.1938 -0.3513 3.7478 17 1 11.3270 -1.4962 3.6077 18 6 8.3833 -1.3090 -0.6968 19 6 6.9991 -1.9605 -0.6126 20 7 2.2878 -1.1336 -0.0049 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.9247 2.1196 0.0004 25 1 4.4189 1.3038 -0.0003 26 1 4.5613 -2.5240 -0.0007 27 1 5.6738 0.0140 1.8854 28 1 6.4866 -1.5646 2.0117 29 1 8.1271 0.2112 2.4487 30 1 7.6966 1.0266 0.9222 31 1 11.6810 -2.1370 0.9674 32 1 8.3518 -0.4705 -1.3925 33 1 9.1135 -2.0433 -1.0370 34 1 6.6665 -2.2381 -1.6128 35 1 7.0541 -2.8516 0.0127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167843997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:36 Heat of formation + Delta-G solvation = 70.989432 kcal Electronic energy + Delta-G solvation = -16502.022885 eV Core-core repulsion = 13922.221579 eV Total energy + Delta-G solvation = -2579.801306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71797 -37.42085 -34.38216 -32.39225 -30.97835 -29.68358 -29.57890 -26.99758 -25.53602 -22.09080 -21.61785 -20.73296 -19.77290 -19.14623 -17.00818 -16.16101 -15.28693 -15.20876 -14.60712 -14.43169 -13.62179 -13.31453 -12.97527 -12.67186 -12.63104 -12.42283 -12.20110 -12.02567 -11.56227 -10.96989 -10.87726 -10.64499 -10.23479 -10.06714 -10.02171 -9.82220 -9.39866 -8.92466 -8.62337 -8.45797 -8.39514 -7.14811 -6.08189 -3.98843 2.22140 2.69273 3.29151 3.37604 3.38633 3.43375 4.03576 4.40309 4.75962 4.98043 5.13659 5.19695 5.35111 5.65451 5.83812 5.97486 6.03685 6.06006 6.24235 6.53726 6.64484 6.68429 6.79943 6.94613 6.99753 7.09217 7.16021 7.31747 7.45282 7.60853 7.70204 7.76420 7.82914 8.15424 8.40302 8.54769 8.98817 9.56623 11.01369 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049674 B = 0.005609 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.535978 B = 4990.583661 C = 5298.841139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.390 5.390 3 C 0.068 3.932 4 C -0.300 4.300 5 C 0.350 3.650 6 N -0.716 5.716 7 C 0.176 3.824 8 H 0.066 0.934 9 C -0.118 4.118 10 C -0.019 4.019 11 C -0.487 4.487 12 C 0.075 3.925 13 N -0.891 5.891 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.264 1.264 17 H -0.291 1.291 18 C 0.013 3.987 19 C -0.114 4.114 20 N -0.371 5.371 21 H 0.065 0.935 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.168 0.832 25 H 0.145 0.855 26 H 0.396 0.604 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.018 0.982 31 H 0.264 0.736 32 H 0.006 0.994 33 H 0.060 0.940 34 H 0.036 0.964 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 4.844 -0.514 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.173 5.173 3 C -0.078 4.078 4 C -0.333 4.333 5 C 0.091 3.909 6 N -0.355 5.355 7 C 0.072 3.928 8 H 0.084 0.916 9 C -0.157 4.157 10 C -0.058 4.058 11 C -0.506 4.506 12 C -0.127 4.127 13 N -0.529 5.529 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.189 1.189 17 H -0.217 1.217 18 C -0.025 4.025 19 C -0.152 4.152 20 N -0.205 5.205 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.185 0.815 25 H 0.163 0.837 26 H 0.230 0.770 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.222 3.929 -0.522 16.699 hybrid contribution 0.733 0.664 0.976 1.389 sum -15.489 4.593 0.454 16.162 Atomic orbital electron populations 1.21634 0.75057 1.03716 1.02509 1.47888 1.05651 1.03336 1.60392 1.22299 0.90844 0.93195 1.01460 1.21158 0.97119 0.93648 1.21385 1.19403 0.87448 0.90302 0.93766 1.44364 1.01475 1.06740 1.82872 1.20894 0.78480 0.96566 0.96864 0.91556 1.22090 0.98028 1.00010 0.95589 1.19886 0.92811 0.95817 0.97239 1.20065 0.99802 1.29472 1.01259 1.24848 0.95810 0.94588 0.97457 1.69839 1.08809 1.36278 1.37978 0.86684 0.78135 0.78659 0.85033 1.20433 1.18945 1.21710 1.19345 0.91180 0.96271 0.95680 1.21911 0.97654 0.98120 0.97541 1.77403 0.99608 1.06495 1.37019 0.91635 0.89915 0.90143 0.81497 0.83744 0.76992 0.94710 0.92992 0.94725 0.96400 0.92631 0.97596 0.92166 0.94578 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 11.47 59.84 0.69 1.66 16 2 N -0.39 -5.42 4.01 -68.18 -0.27 -5.69 16 3 C 0.07 0.89 11.48 -17.24 -0.20 0.69 16 4 C -0.30 -4.83 9.92 -39.82 -0.40 -5.22 16 5 C 0.35 6.29 8.14 -154.55 -1.26 5.03 16 6 N -0.72 -12.92 5.28 -53.62 -0.28 -13.20 16 7 C 0.18 3.43 2.34 -67.97 -0.16 3.27 16 8 H 0.07 1.32 7.15 -51.93 -0.37 0.95 16 9 C -0.12 -2.45 5.53 -26.41 -0.15 -2.59 16 10 C -0.02 -0.45 5.62 -27.26 -0.15 -0.60 16 11 C -0.49 -12.66 5.50 -98.92 -0.54 -13.21 16 12 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 13 N -0.89 -25.52 12.73 55.43 0.71 -24.81 16 14 Si 0.89 21.03 27.52 -169.99 -4.68 16.35 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.26 -6.09 6.11 56.52 0.35 -5.74 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 19 C -0.11 -2.38 5.40 -26.63 -0.14 -2.52 16 20 N -0.37 -6.53 12.59 31.41 0.40 -6.14 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 25 H 0.14 2.27 7.45 -52.49 -0.39 1.87 16 26 H 0.40 6.79 8.73 -40.82 -0.36 6.44 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.80 4.60 -51.93 -0.24 0.56 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 283.94 15.07 4.28 4.28 Total: -1.00 -30.47 283.94 -7.57 -38.04 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.14 Total: 2.57 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.57 Total: -11.39 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.54 Total: -49.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.68 Total: 16.35 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.47 -7.57 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.032 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds