Wall clock time and date at job start Sun Mar 29 2020 22:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34959 * 125.97566 * 2 1 4 4 C 1.35243 * 107.86731 * 180.02562 * 3 2 1 5 5 C 1.40430 * 107.85837 * 359.97438 * 4 3 2 6 6 N 1.39988 * 125.97149 * 179.97438 * 5 4 3 7 7 C 1.46507 * 120.00398 * 0.02562 * 6 5 4 8 8 H 1.08993 * 109.40702 * 324.85376 * 7 6 5 9 9 C 1.52955 * 109.35689 * 84.67871 * 7 6 5 10 10 C 1.53661 * 109.32473 * 183.80059 * 9 7 6 11 11 C 1.51270 * 108.30723 * 305.14049 * 10 9 7 12 12 C 1.37879 * 120.84356 * 231.37849 * 11 10 9 13 13 N 1.31514 * 119.99350 * 180.28098 * 12 11 10 14 14 Si 1.86798 * 120.00608 * 0.28149 * 12 11 10 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 11 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 11 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 11 18 18 C 1.51265 * 118.30026 * 51.65651 * 11 10 9 19 19 C 1.52959 * 109.41143 * 204.99758 * 7 6 5 20 20 N 1.31215 * 108.05091 * 0.24196 * 5 4 3 21 21 H 1.09004 * 109.47515 * 90.00153 * 1 2 3 22 22 H 1.09001 * 109.47390 * 209.99979 * 1 2 3 23 23 H 1.09002 * 109.47311 * 329.99788 * 1 2 3 24 24 H 1.08004 * 126.06257 * 0.02562 * 3 2 1 25 25 H 1.07998 * 126.07406 * 180.02562 * 4 3 2 26 26 H 0.97001 * 120.00143 * 179.97438 * 6 5 4 27 27 H 1.09005 * 109.48318 * 303.65410 * 9 7 6 28 28 H 1.09000 * 109.48301 * 63.67638 * 9 7 6 29 29 H 1.08998 * 109.68928 * 185.52122 * 10 9 7 30 30 H 1.09001 * 109.78021 * 64.81103 * 10 9 7 31 31 H 0.97005 * 119.99661 * 179.97438 * 13 12 11 32 32 H 1.08996 * 109.62656 * 68.11897 * 18 11 10 33 33 H 1.09005 * 109.62271 * 188.68416 * 18 11 10 34 34 H 1.09003 * 109.48108 * 56.38751 * 19 7 6 35 35 H 1.08995 * 109.49355 * 296.34781 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0922 0.0000 4 6 3.5432 0.6718 -0.0006 5 6 3.5371 -0.7325 -0.0003 6 7 4.6664 -1.5597 -0.0013 7 6 6.0072 -0.9690 -0.0021 8 1 5.9993 -0.0537 -0.5937 9 6 6.4181 -0.6425 1.4346 10 6 7.7830 0.0634 1.4251 11 6 8.7658 -0.8126 0.6800 12 6 9.9814 -1.1451 1.2392 13 7 10.8255 -1.9033 0.5742 14 14 10.4294 -0.5189 2.9411 15 1 11.1231 0.7885 2.8208 16 1 9.1938 -0.3513 3.7478 17 1 11.3270 -1.4962 3.6077 18 6 8.3833 -1.3090 -0.6968 19 6 6.9991 -1.9605 -0.6126 20 7 2.2878 -1.1336 -0.0049 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.9247 2.1196 0.0004 25 1 4.4189 1.3038 -0.0003 26 1 4.5613 -2.5240 -0.0007 27 1 5.6738 0.0140 1.8854 28 1 6.4866 -1.5646 2.0117 29 1 8.1271 0.2112 2.4487 30 1 7.6966 1.0266 0.9222 31 1 11.6810 -2.1370 0.9674 32 1 8.3518 -0.4705 -1.3925 33 1 9.1135 -2.0433 -1.0370 34 1 6.6665 -2.2381 -1.6128 35 1 7.0541 -2.8516 0.0127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167843997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:35 Heat of formation + Delta-G solvation = 52.190752 kcal Electronic energy + Delta-G solvation = -16502.838057 eV Core-core repulsion = 13922.221579 eV Total energy + Delta-G solvation = -2580.616478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85317 -39.07628 -35.92090 -33.95216 -32.40948 -31.38697 -30.88023 -28.64850 -26.60070 -23.86606 -23.32628 -22.02588 -21.13090 -20.72332 -18.24885 -17.84766 -16.64513 -16.39034 -16.20259 -16.04061 -15.07725 -14.71492 -14.44856 -14.20609 -14.05071 -13.71667 -13.63985 -13.30503 -13.08656 -12.72558 -12.65505 -12.47474 -11.88584 -11.78982 -11.44353 -11.33818 -11.08988 -10.78281 -10.54013 -10.41646 -9.56923 -8.44536 -8.13725 -6.07602 1.16456 1.41186 1.44104 1.51996 1.67797 2.18400 2.43785 2.76661 3.16005 3.93133 4.10617 4.17732 4.29047 4.55079 4.55577 4.74763 4.76670 4.78161 4.80774 4.97339 5.00715 5.03278 5.12730 5.22464 5.31126 5.36194 5.55282 5.62477 5.67461 5.79442 5.87080 6.28884 6.38325 6.41114 6.83723 6.98761 7.25402 7.50291 8.97119 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049674 B = 0.005609 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.535978 B = 4990.583661 C = 5298.841139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.388 5.388 3 C 0.091 3.909 4 C -0.336 4.336 5 C 0.327 3.673 6 N -0.718 5.718 7 C 0.193 3.807 8 H 0.066 0.934 9 C -0.109 4.109 10 C -0.020 4.020 11 C -0.496 4.496 12 C 0.021 3.979 13 N -0.933 5.933 14 Si 0.939 3.061 15 H -0.273 1.273 16 H -0.251 1.251 17 H -0.295 1.295 18 C 0.010 3.990 19 C -0.103 4.103 20 N -0.404 5.404 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.217 0.783 25 H 0.142 0.858 26 H 0.397 0.603 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.005 0.995 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.245 6.609 0.149 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.170 5.170 3 C -0.056 4.056 4 C -0.369 4.369 5 C 0.070 3.930 6 N -0.357 5.357 7 C 0.088 3.912 8 H 0.084 0.916 9 C -0.148 4.148 10 C -0.058 4.058 11 C -0.515 4.515 12 C -0.177 4.177 13 N -0.573 5.573 14 Si 0.766 3.234 15 H -0.199 1.199 16 H -0.175 1.175 17 H -0.221 1.221 18 C -0.028 4.028 19 C -0.141 4.141 20 N -0.238 5.238 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.136 0.864 24 H 0.234 0.766 25 H 0.160 0.840 26 H 0.232 0.768 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.912 5.695 0.143 19.752 hybrid contribution 1.390 0.155 0.692 1.561 sum -17.522 5.850 0.835 18.492 Atomic orbital electron populations 1.22075 0.72076 1.05566 1.04123 1.48343 1.07297 1.02633 1.58765 1.22958 0.89655 0.94877 0.98133 1.21331 0.98683 0.92856 1.24016 1.19610 0.87398 0.91136 0.94867 1.44076 1.01149 1.06864 1.83651 1.20518 0.78991 0.95900 0.95813 0.91595 1.21960 0.97033 0.99416 0.96400 1.19896 0.93260 0.95844 0.96827 1.20662 1.00139 1.28940 1.01790 1.25610 0.96090 0.95193 1.00824 1.69977 1.09334 1.38362 1.39658 0.85827 0.78179 0.78075 0.81340 1.19859 1.17548 1.22136 1.19297 0.92550 0.95610 0.95335 1.21702 0.96111 0.97799 0.98518 1.77292 0.99944 1.08976 1.37601 0.90094 0.90042 0.86401 0.76639 0.83982 0.76832 0.93250 0.94164 0.94717 0.95439 0.92902 0.97668 0.95298 0.93031 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.35 11.47 127.77 1.46 2.81 16 2 N -0.39 -9.53 4.01 -369.61 -1.48 -11.01 16 3 C 0.09 2.04 11.48 83.52 0.96 3.00 16 4 C -0.34 -10.08 9.92 22.11 0.22 -9.86 16 5 C 0.33 11.34 8.14 133.39 1.09 12.42 16 6 N -0.72 -25.41 5.28 -323.54 -1.71 -27.12 16 7 C 0.19 7.37 2.34 44.96 0.11 7.48 16 8 H 0.07 2.55 7.15 -2.39 -0.02 2.53 16 9 C -0.11 -4.39 5.53 30.80 0.17 -4.22 16 10 C -0.02 -0.91 5.62 30.25 0.17 -0.74 16 11 C -0.50 -25.93 5.50 -16.17 -0.09 -26.02 16 12 C 0.02 1.14 5.46 84.66 0.46 1.60 16 13 N -0.93 -54.99 12.73 21.45 0.27 -54.72 16 14 Si 0.94 43.22 27.52 68.60 1.89 45.11 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.25 -10.90 6.11 99.48 0.61 -10.29 16 17 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 18 C 0.01 0.51 5.97 30.10 0.18 0.69 16 19 C -0.10 -4.31 5.40 30.66 0.17 -4.14 16 20 N -0.40 -13.55 12.59 -54.55 -0.69 -14.24 16 21 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 22 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.22 2.49 8.06 -2.91 -0.02 2.47 16 25 H 0.14 4.20 7.45 -2.91 -0.02 4.18 16 26 H 0.40 13.52 8.73 -92.71 -0.81 12.71 16 27 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.55 4.60 -2.39 -0.01 1.54 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 32 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 33 H 0.03 1.60 7.07 -2.38 -0.02 1.58 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -66.64 283.94 3.35 -63.28 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.18 Total: 15.68 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.89 Total: -16.98 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -3.60 Total: -107.08 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.89 Total: 45.11 kcal Total: -66.64 3.35 -63.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.472 kcal (2) G-P(sol) polarization free energy of solvation -66.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds