Wall clock time and date at job start Sun Mar 29 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34932 * 126.39731 * 2 1 4 4 N 1.30595 * 108.86042 * 179.79982 * 3 2 1 5 5 C 1.34342 * 109.34297 * 0.38130 * 4 3 2 6 6 N 1.40444 * 126.04346 * 179.88264 * 5 4 3 7 7 C 1.46498 * 120.00106 * 179.68880 * 6 5 4 8 8 H 1.09003 * 109.35419 * 35.17814 * 7 6 5 9 9 C 1.52955 * 109.41143 * 155.00079 * 7 6 5 10 10 C 1.53236 * 109.40289 * 183.70673 * 9 7 6 11 11 C 1.51267 * 108.53325 * 305.37023 * 10 9 7 12 12 C 1.37879 * 120.85036 * 231.32227 * 11 10 9 13 13 N 1.31519 * 119.99722 * 0.02562 * 12 11 10 14 14 Si 1.86798 * 120.00277 * 180.02562 * 12 11 10 15 15 H 1.48503 * 109.46900 * 60.00188 * 14 12 11 16 16 H 1.48497 * 109.47221 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47319 * 300.00669 * 14 12 11 18 18 C 1.51264 * 118.29987 * 51.35263 * 11 10 9 19 19 C 1.52958 * 109.41501 * 275.35546 * 7 6 5 20 20 C 1.35197 * 107.91461 * 359.61758 * 5 4 3 21 21 H 1.09002 * 109.47500 * 269.95956 * 1 2 3 22 22 H 1.08997 * 109.47164 * 29.96019 * 1 2 3 23 23 H 1.08997 * 109.47146 * 149.95895 * 1 2 3 24 24 H 1.08003 * 125.57067 * 0.03499 * 3 2 1 25 25 H 0.97005 * 119.99735 * 359.69126 * 6 5 4 26 26 H 1.09000 * 109.48732 * 63.72887 * 9 7 6 27 27 H 1.08998 * 109.49575 * 303.69271 * 9 7 6 28 28 H 1.08991 * 109.62719 * 65.08875 * 10 9 7 29 29 H 1.09003 * 109.62204 * 185.65854 * 10 9 7 30 30 H 0.96999 * 119.99814 * 179.97438 * 13 12 11 31 31 H 1.09004 * 109.62227 * 188.93370 * 18 11 10 32 32 H 1.09000 * 109.62923 * 68.36662 * 18 11 10 33 33 H 1.09000 * 109.48176 * 296.27380 * 19 7 6 34 34 H 1.08996 * 109.48436 * 56.29999 * 19 7 6 35 35 H 1.08006 * 126.66229 * 180.20370 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2656 1.0861 0.0000 4 7 3.5109 0.6926 0.0043 5 6 3.5533 -0.6501 -0.0012 6 7 4.7143 -1.4403 -0.0013 7 6 4.6061 -2.9013 -0.0009 8 1 3.7410 -3.1996 -0.5930 9 6 5.8723 -3.5050 -0.6107 10 6 5.7206 -5.0275 -0.6953 11 6 5.3797 -5.5539 0.6813 12 6 6.0989 -6.5887 1.2407 13 7 7.0961 -7.1308 0.5763 14 14 5.6569 -7.2207 2.9420 15 1 4.2576 -7.7179 2.9372 16 1 6.5747 -8.3276 3.3127 17 1 5.7872 -6.1187 3.9288 18 6 4.2290 -4.9164 1.4281 19 6 4.4347 -3.3980 1.4356 20 6 2.2806 -1.1064 -0.0007 21 1 -0.3634 -0.0007 1.0277 22 1 -0.3633 0.8903 -0.5132 23 1 -0.3633 -0.8896 -0.5145 24 1 1.9313 2.1131 0.0005 25 1 5.5879 -1.0186 -0.0017 26 1 6.7302 -3.2594 0.0152 27 1 6.0238 -3.0987 -1.6107 28 1 4.9203 -5.2776 -1.3915 29 1 6.6569 -5.4703 -1.0350 30 1 7.6024 -7.8586 0.9700 31 1 4.2069 -5.2880 2.4526 32 1 3.2905 -5.1563 0.9284 33 1 5.3266 -3.1548 2.0132 34 1 3.5673 -2.9156 1.8860 35 1 1.9659 -2.1396 -0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:33 Heat of formation + Delta-G solvation = 54.152098 kcal Electronic energy + Delta-G solvation = -16591.133431 eV Core-core repulsion = 14010.602004 eV Total energy + Delta-G solvation = -2580.531428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61393 -37.40612 -34.47096 -33.08715 -31.29076 -29.67904 -28.38297 -27.28083 -25.81202 -22.11203 -21.64569 -20.84372 -20.02322 -19.12761 -17.24957 -16.07678 -15.49190 -15.02232 -14.71886 -14.43608 -13.76258 -13.38384 -13.27691 -12.91053 -12.72981 -12.60745 -12.26143 -11.98460 -11.52478 -10.97490 -10.83673 -10.60734 -10.13140 -10.10868 -9.83374 -9.69862 -9.53152 -8.98815 -8.85164 -8.58306 -8.45504 -6.76180 -6.08664 -3.99281 2.36410 2.99383 3.30254 3.36914 3.38402 3.65866 3.97326 4.40204 4.69716 4.97087 5.04491 5.19591 5.27267 5.32523 5.79140 5.94471 5.99229 6.24528 6.44760 6.49065 6.57453 6.70058 6.80655 6.95269 7.01237 7.06734 7.15564 7.38691 7.44293 7.65819 7.74067 7.83411 7.89971 8.31016 8.40268 8.71164 8.98271 9.56229 11.01086 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040737 B = 0.006008 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.171417 B = 4659.027831 C = 5006.847774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.463 5.463 3 C 0.194 3.806 4 N -0.533 5.533 5 C 0.296 3.704 6 N -0.728 5.728 7 C 0.179 3.821 8 H 0.060 0.940 9 C -0.113 4.113 10 C 0.013 3.987 11 C -0.489 4.489 12 C 0.076 3.924 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.275 1.275 18 C -0.009 4.009 19 C -0.119 4.119 20 C -0.144 4.144 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.201 0.799 25 H 0.395 0.605 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.005 0.995 29 H 0.060 0.940 30 H 0.265 0.735 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.032 0.968 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.477 11.961 -0.801 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.150 5.150 3 C -0.088 4.088 4 N -0.259 5.259 5 C 0.071 3.929 6 N -0.365 5.365 7 C 0.075 3.925 8 H 0.078 0.922 9 C -0.152 4.152 10 C -0.024 4.024 11 C -0.508 4.508 12 C -0.126 4.126 13 N -0.528 5.528 14 Si 0.719 3.281 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.200 1.200 18 C -0.047 4.047 19 C -0.158 4.158 20 C -0.277 4.277 21 H 0.089 0.911 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.217 0.783 25 H 0.228 0.772 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.885 12.123 -0.801 16.313 hybrid contribution -0.615 -0.697 1.047 1.400 sum -11.500 11.426 0.247 16.213 Atomic orbital electron populations 1.21895 0.77179 1.04106 1.03044 1.44994 1.06925 1.06721 1.56386 1.24581 0.84992 0.93402 1.05808 1.69948 1.19835 1.10707 1.25452 1.17675 0.87271 0.87644 1.00286 1.44267 1.03367 1.04306 1.84511 1.20760 0.99085 0.76308 0.96340 0.92160 1.21899 0.95734 1.00007 0.97569 1.19340 0.98530 0.89002 0.95564 1.20040 1.13502 1.15937 1.01342 1.24835 0.94509 0.95869 0.97414 1.69823 1.19957 1.25007 1.38016 0.86662 0.78229 0.78307 0.84896 1.20078 1.21873 1.20021 1.19611 0.97166 0.91716 0.96214 1.22024 0.99495 0.98262 0.96038 1.21698 0.89519 0.92077 1.24438 0.91070 0.89978 0.89964 0.78289 0.77165 0.92777 0.94592 0.97685 0.92181 0.92543 0.95791 0.96487 0.92918 0.94882 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.18 59.85 0.67 1.27 16 2 N -0.46 -5.82 3.16 -125.68 -0.40 -6.22 16 3 C 0.19 2.55 12.55 -90.40 -1.13 1.41 16 4 N -0.53 -9.14 11.26 -13.64 -0.15 -9.30 16 5 C 0.30 5.33 8.04 -153.33 -1.23 4.10 16 6 N -0.73 -13.47 5.30 -54.13 -0.29 -13.76 16 7 C 0.18 3.55 2.33 -67.98 -0.16 3.39 16 8 H 0.06 1.21 7.13 -51.93 -0.37 0.84 16 9 C -0.11 -2.42 5.40 -26.63 -0.14 -2.56 16 10 C 0.01 0.34 5.97 -27.48 -0.16 0.17 16 11 C -0.49 -12.85 5.51 -98.93 -0.55 -13.39 16 12 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 13 N -0.89 -25.63 12.73 55.43 0.71 -24.93 16 14 Si 0.89 21.42 26.80 -169.99 -4.56 16.87 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.01 -0.21 5.59 -27.49 -0.15 -0.36 16 19 C -0.12 -2.49 5.52 -26.63 -0.15 -2.64 16 20 C -0.14 -2.30 10.72 -16.11 -0.17 -2.47 16 21 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 25 H 0.39 7.08 8.73 -40.82 -0.36 6.73 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.02 0.55 5.17 -51.93 -0.27 0.29 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.17 2.60 7.40 -52.48 -0.39 2.21 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -30.88 284.01 -8.80 -39.68 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.11 Total: 2.47 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.28 Total: -9.10 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.13 Total: -54.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.56 Total: 16.87 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.88 -8.80 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.836 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds