Wall clock time and date at job start Sun Mar 29 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34932 * 126.39731 * 2 1 4 4 N 1.30595 * 108.86042 * 179.79982 * 3 2 1 5 5 C 1.34342 * 109.34297 * 0.38130 * 4 3 2 6 6 N 1.40444 * 126.04346 * 179.88264 * 5 4 3 7 7 C 1.46498 * 120.00106 * 179.68880 * 6 5 4 8 8 H 1.09003 * 109.35419 * 35.17814 * 7 6 5 9 9 C 1.52955 * 109.41143 * 155.00079 * 7 6 5 10 10 C 1.53236 * 109.40289 * 183.70673 * 9 7 6 11 11 C 1.51267 * 108.53325 * 305.37023 * 10 9 7 12 12 C 1.37879 * 120.85036 * 231.32227 * 11 10 9 13 13 N 1.31519 * 119.99722 * 0.02562 * 12 11 10 14 14 Si 1.86798 * 120.00277 * 180.02562 * 12 11 10 15 15 H 1.48503 * 109.46900 * 60.00188 * 14 12 11 16 16 H 1.48497 * 109.47221 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47319 * 300.00669 * 14 12 11 18 18 C 1.51264 * 118.29987 * 51.35263 * 11 10 9 19 19 C 1.52958 * 109.41501 * 275.35546 * 7 6 5 20 20 C 1.35197 * 107.91461 * 359.61758 * 5 4 3 21 21 H 1.09002 * 109.47500 * 269.95956 * 1 2 3 22 22 H 1.08997 * 109.47164 * 29.96019 * 1 2 3 23 23 H 1.08997 * 109.47146 * 149.95895 * 1 2 3 24 24 H 1.08003 * 125.57067 * 0.03499 * 3 2 1 25 25 H 0.97005 * 119.99735 * 359.69126 * 6 5 4 26 26 H 1.09000 * 109.48732 * 63.72887 * 9 7 6 27 27 H 1.08998 * 109.49575 * 303.69271 * 9 7 6 28 28 H 1.08991 * 109.62719 * 65.08875 * 10 9 7 29 29 H 1.09003 * 109.62204 * 185.65854 * 10 9 7 30 30 H 0.96999 * 119.99814 * 179.97438 * 13 12 11 31 31 H 1.09004 * 109.62227 * 188.93370 * 18 11 10 32 32 H 1.09000 * 109.62923 * 68.36662 * 18 11 10 33 33 H 1.09000 * 109.48176 * 296.27380 * 19 7 6 34 34 H 1.08996 * 109.48436 * 56.29999 * 19 7 6 35 35 H 1.08006 * 126.66229 * 180.20370 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2656 1.0861 0.0000 4 7 3.5109 0.6926 0.0043 5 6 3.5533 -0.6501 -0.0012 6 7 4.7143 -1.4403 -0.0013 7 6 4.6061 -2.9013 -0.0009 8 1 3.7410 -3.1996 -0.5930 9 6 5.8723 -3.5050 -0.6107 10 6 5.7206 -5.0275 -0.6953 11 6 5.3797 -5.5539 0.6813 12 6 6.0989 -6.5887 1.2407 13 7 7.0961 -7.1308 0.5763 14 14 5.6569 -7.2207 2.9420 15 1 4.2576 -7.7179 2.9372 16 1 6.5747 -8.3276 3.3127 17 1 5.7872 -6.1187 3.9288 18 6 4.2290 -4.9164 1.4281 19 6 4.4347 -3.3980 1.4356 20 6 2.2806 -1.1064 -0.0007 21 1 -0.3634 -0.0007 1.0277 22 1 -0.3633 0.8903 -0.5132 23 1 -0.3633 -0.8896 -0.5145 24 1 1.9313 2.1131 0.0005 25 1 5.5879 -1.0186 -0.0017 26 1 6.7302 -3.2594 0.0152 27 1 6.0238 -3.0987 -1.6107 28 1 4.9203 -5.2776 -1.3915 29 1 6.6569 -5.4703 -1.0350 30 1 7.6024 -7.8586 0.9700 31 1 4.2069 -5.2880 2.4526 32 1 3.2905 -5.1563 0.9284 33 1 5.3266 -3.1548 2.0132 34 1 3.5673 -2.9156 1.8860 35 1 1.9659 -2.1396 -0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:33 Heat of formation + Delta-G solvation = 36.339475 kcal Electronic energy + Delta-G solvation = -16591.905845 eV Core-core repulsion = 14010.602004 eV Total energy + Delta-G solvation = -2581.303841 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70199 -39.09363 -35.90099 -34.46931 -33.00995 -31.49726 -29.64415 -28.69463 -26.95483 -23.87971 -23.34266 -22.13071 -21.36283 -20.73737 -18.40827 -17.86448 -16.53044 -16.43669 -16.36565 -15.94335 -15.09757 -14.81703 -14.64746 -14.37473 -14.19633 -13.80032 -13.75333 -13.29217 -13.27464 -12.73218 -12.68609 -12.45463 -11.95757 -11.80018 -11.61098 -11.04102 -10.86073 -10.79756 -10.54365 -10.46635 -10.04677 -8.16413 -8.05600 -6.09804 1.31571 1.39704 1.40884 1.48735 2.06611 2.41232 2.44707 2.67493 3.13452 4.00213 4.12135 4.14854 4.27513 4.31202 4.55466 4.55774 4.74155 4.75531 4.81339 4.96345 5.01808 5.10979 5.11649 5.23939 5.30568 5.40352 5.54931 5.59837 5.66204 5.77734 5.85489 6.35565 6.40141 6.59841 6.96119 7.02799 7.44642 7.48133 8.94847 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040737 B = 0.006008 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.171417 B = 4659.027831 C = 5006.847774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.458 5.458 3 C 0.207 3.793 4 N -0.573 5.573 5 C 0.263 3.737 6 N -0.732 5.732 7 C 0.196 3.804 8 H 0.062 0.938 9 C -0.103 4.103 10 C 0.011 3.989 11 C -0.499 4.499 12 C 0.023 3.977 13 N -0.931 5.931 14 Si 0.942 3.058 15 H -0.264 1.264 16 H -0.294 1.294 17 H -0.270 1.270 18 C -0.010 4.010 19 C -0.109 4.109 20 C -0.151 4.151 21 H 0.084 0.916 22 H 0.114 0.886 23 H 0.087 0.913 24 H 0.246 0.754 25 H 0.394 0.606 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.005 0.995 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.024 0.976 32 H 0.028 0.972 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.010 13.791 -0.227 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.144 5.144 3 C -0.075 4.075 4 N -0.301 5.301 5 C 0.040 3.960 6 N -0.369 5.369 7 C 0.091 3.909 8 H 0.080 0.920 9 C -0.141 4.141 10 C -0.027 4.027 11 C -0.519 4.519 12 C -0.176 4.176 13 N -0.571 5.571 14 Si 0.768 3.232 15 H -0.189 1.189 16 H -0.220 1.220 17 H -0.195 1.195 18 C -0.048 4.048 19 C -0.148 4.148 20 C -0.286 4.286 21 H 0.103 0.897 22 H 0.132 0.868 23 H 0.106 0.894 24 H 0.262 0.738 25 H 0.227 0.773 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.480 13.977 -0.224 19.419 hybrid contribution 0.073 -1.169 0.800 1.418 sum -13.407 12.808 0.576 18.551 Atomic orbital electron populations 1.22276 0.73946 1.06053 1.04544 1.45276 1.08780 1.05480 1.54899 1.25461 0.83999 0.95150 1.02923 1.69903 1.22414 1.10377 1.27377 1.17931 0.87467 0.88359 1.02261 1.44004 1.03947 1.03564 1.85367 1.20396 0.97871 0.77361 0.95312 0.92036 1.21695 0.96357 0.97607 0.98457 1.19290 0.96858 0.91322 0.95221 1.20648 1.13856 1.15454 1.01907 1.25582 0.94763 0.96520 1.00689 1.69960 1.21494 1.25996 1.39647 0.85822 0.78341 0.77800 0.81189 1.18940 1.22039 1.19486 1.19632 0.96331 0.93026 0.95857 1.21891 0.99439 0.96686 0.96818 1.21780 0.89573 0.93106 1.24116 0.89727 0.86775 0.89433 0.73795 0.77253 0.93888 0.93125 0.97648 0.95304 0.92811 0.95728 0.95407 0.94333 0.93334 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 11.18 127.77 1.43 2.20 16 2 N -0.46 -10.02 3.16 -551.54 -1.74 -11.76 16 3 C 0.21 4.73 12.55 180.27 2.26 6.99 16 4 N -0.57 -18.62 11.26 -197.06 -2.22 -20.84 16 5 C 0.26 9.13 8.04 131.06 1.05 10.18 16 6 N -0.73 -26.56 5.30 -325.17 -1.72 -28.29 16 7 C 0.20 7.60 2.33 44.96 0.10 7.70 16 8 H 0.06 2.39 7.13 -2.39 -0.02 2.37 16 9 C -0.10 -4.38 5.40 30.66 0.17 -4.22 16 10 C 0.01 0.56 5.97 30.11 0.18 0.74 16 11 C -0.50 -26.35 5.51 -16.17 -0.09 -26.44 16 12 C 0.02 1.25 5.46 84.65 0.46 1.72 16 13 N -0.93 -55.09 12.73 21.45 0.27 -54.82 16 14 Si 0.94 43.96 26.80 68.60 1.84 45.80 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 18 C -0.01 -0.47 5.59 30.10 0.17 -0.30 16 19 C -0.11 -4.45 5.52 30.66 0.17 -4.28 16 20 C -0.15 -4.52 10.72 83.11 0.89 -3.63 16 21 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.25 2.91 8.06 -2.91 -0.02 2.89 16 25 H 0.39 14.08 8.73 -92.70 -0.81 13.27 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.03 1.61 7.07 -2.39 -0.02 1.59 16 30 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.02 1.10 5.17 -2.38 -0.01 1.08 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.17 4.87 7.40 -2.91 -0.02 4.85 16 Total: -1.00 -67.39 284.01 3.50 -63.89 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.27 Total: 15.35 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 6.80 Total: -9.33 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -5.41 Total: -115.70 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.84 Total: 45.80 kcal Total: -67.39 3.50 -63.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.229 kcal (2) G-P(sol) polarization free energy of solvation -67.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds