Wall clock time and date at job start Sun Mar 29 2020 21:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39167 * 120.49417 * 2 1 4 4 N 1.39202 * 120.82136 * 0.02562 * 3 2 1 5 5 C 1.39644 * 118.35496 * 180.02562 * 3 2 1 6 6 C 1.37769 * 119.23053 * 0.02562 * 5 3 2 7 7 N 1.32060 * 120.93576 * 359.97161 * 6 5 3 8 8 C 1.32544 * 121.80310 * 359.75258 * 7 6 5 9 9 N 1.39033 * 119.66835 * 180.26893 * 8 7 6 10 10 C 1.46495 * 120.00177 * 0.27006 * 9 8 7 11 11 C 1.52997 * 109.47742 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47635 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47596 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99370 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00452 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99834 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00351 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47006 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47149 * 120.00232 * 17 15 13 20 20 H 1.48492 * 109.47651 * 240.00552 * 17 15 13 21 21 H 1.08999 * 109.47015 * 90.00438 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99591 * 1 2 3 23 23 H 1.09000 * 109.47248 * 330.00308 * 1 2 3 24 24 H 0.96997 * 120.00278 * 0.02562 * 4 3 2 25 25 H 0.97003 * 119.99546 * 179.97438 * 4 3 2 26 26 H 1.08004 * 120.38733 * 180.02562 * 5 3 2 27 27 H 1.08003 * 119.53390 * 179.97438 * 6 5 3 28 28 H 0.97007 * 120.00220 * 180.27479 * 9 8 7 29 29 H 1.09006 * 109.47060 * 300.00487 * 10 9 8 30 30 H 1.09000 * 109.46966 * 59.99680 * 10 9 8 31 31 H 1.09006 * 109.47097 * 300.00288 * 11 10 9 32 32 H 1.09000 * 109.46863 * 59.99389 * 11 10 9 33 33 H 1.09006 * 109.46986 * 300.00201 * 12 11 10 34 34 H 1.09000 * 109.47146 * 59.99459 * 12 11 10 35 35 H 0.96995 * 119.99698 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2133 1.1992 0.0000 4 7 1.5451 2.4204 0.0005 5 6 3.6087 1.1470 -0.0005 6 6 4.2361 -0.0795 -0.0016 7 7 3.5369 -1.1998 -0.0015 8 6 2.2114 -1.1958 0.0044 9 7 1.5197 -2.4019 0.0099 10 6 2.2557 -3.6685 0.0150 11 6 1.2649 -4.8343 0.0198 12 6 2.0336 -6.1570 0.0258 13 6 1.0577 -7.3053 0.0312 14 1 -0.0047 -7.1109 0.0299 15 6 1.5209 -8.6038 0.0366 16 7 2.8147 -8.8404 0.0376 17 14 0.3112 -10.0271 0.0439 18 1 -1.0762 -9.4975 0.0420 19 1 0.5231 -10.8631 -1.1651 20 1 0.5248 -10.8522 1.2599 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 0.5754 2.4427 0.0013 25 1 2.0494 3.2490 0.0009 26 1 4.1895 2.0577 -0.0002 27 1 5.3152 -0.1255 -0.0025 28 1 0.5496 -2.4046 0.0102 29 1 2.8823 -3.7282 -0.8750 30 1 2.8829 -3.7206 0.9050 31 1 0.6380 -4.7747 0.9096 32 1 0.6380 -4.7819 -0.8704 33 1 2.6608 -6.2168 -0.8637 34 1 2.6602 -6.2091 0.9162 35 1 3.1406 -9.7540 0.0417 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:17 Heat of formation + Delta-G solvation = 17.058754 kcal Electronic energy + Delta-G solvation = -15714.379693 eV Core-core repulsion = 13132.239777 eV Total energy + Delta-G solvation = -2582.139916 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17611 -36.47719 -35.18630 -33.70652 -32.16345 -30.62043 -29.28428 -27.07234 -26.09705 -23.22453 -21.94654 -21.33890 -20.28455 -17.82916 -17.49357 -16.29728 -15.33590 -15.19919 -14.94262 -14.79496 -14.42615 -14.08998 -13.60659 -13.37609 -12.72971 -12.47581 -12.19889 -12.06321 -11.75486 -11.38796 -11.33974 -10.89151 -10.62706 -10.49887 -9.94268 -9.50600 -9.44867 -9.09383 -9.03574 -8.33426 -7.96140 -7.36952 -5.98050 -4.00669 1.55318 1.87764 3.32394 3.39629 3.43205 3.48852 3.81707 4.18698 4.47578 4.79647 4.97069 5.19349 5.34526 5.37713 5.49549 5.58918 5.60402 5.87862 5.93829 6.07014 6.10917 6.19581 6.32281 6.51194 6.73468 6.86243 7.05518 7.27116 7.53913 7.54798 7.69419 7.76797 7.83121 8.01852 8.43439 8.63605 9.06374 9.63249 11.13328 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.055454 B = 0.003987 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.797723 B = 7021.045320 C = 7494.785332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.295 4.295 3 C 0.284 3.716 4 N -0.868 5.868 5 C -0.313 4.313 6 C 0.181 3.819 7 N -0.571 5.571 8 C 0.443 3.557 9 N -0.718 5.718 10 C 0.130 3.870 11 C -0.122 4.122 12 C 0.025 3.975 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.398 0.602 25 H 0.398 0.602 26 H 0.122 0.878 27 H 0.150 0.850 28 H 0.403 0.597 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 21.935 -0.073 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.308 4.308 3 C 0.171 3.829 4 N -0.408 5.408 5 C -0.342 4.342 6 C 0.023 3.977 7 N -0.291 5.291 8 C 0.206 3.794 9 N -0.349 5.349 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.013 4.013 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.227 0.773 25 H 0.226 0.774 26 H 0.140 0.860 27 H 0.167 0.833 28 H 0.240 0.760 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.733 20.736 -0.074 20.808 hybrid contribution -1.485 0.338 0.019 1.523 sum -3.218 21.074 -0.056 21.318 Atomic orbital electron populations 1.20299 0.91211 1.01767 1.01311 1.19400 0.96269 0.91276 1.23852 1.17459 0.91200 0.85487 0.88769 1.42396 1.09266 1.04933 1.84163 1.21168 0.92467 0.99610 1.20915 1.22092 0.99257 0.86485 0.89873 1.67339 1.05841 1.31261 1.24709 1.17962 0.88200 0.85424 0.87859 1.44974 1.08237 1.03036 1.78702 1.21510 0.95015 0.81114 1.01642 1.21892 0.98015 0.95559 1.00582 1.19016 0.95408 0.89244 0.97620 1.21263 0.93048 0.90990 1.50580 0.92665 1.25030 0.95111 0.99010 0.95362 1.69982 1.12378 1.20146 1.50813 0.86535 0.81399 0.82484 0.77569 1.19787 1.21022 1.21018 0.92240 0.92004 0.92636 0.77291 0.77366 0.86012 0.83268 0.75963 0.92156 0.92189 0.93011 0.92990 0.96279 0.96282 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.18 36.01 0.33 -0.57 16 2 C -0.30 -3.92 5.93 -104.07 -0.62 -4.53 16 3 C 0.28 3.32 6.79 -83.64 -0.57 2.75 16 4 N -0.87 -6.73 8.99 32.51 0.29 -6.43 16 5 C -0.31 -3.66 9.99 -39.23 -0.39 -4.05 16 6 C 0.18 2.44 11.16 -17.62 -0.20 2.24 16 7 N -0.57 -9.55 9.56 -12.53 -0.12 -9.67 16 8 C 0.44 7.08 7.46 -155.00 -1.16 5.93 16 9 N -0.72 -11.53 5.61 -60.48 -0.34 -11.87 16 10 C 0.13 2.44 5.69 -4.05 -0.02 2.41 16 11 C -0.12 -2.53 5.27 -26.74 -0.14 -2.67 16 12 C 0.02 0.65 4.97 -27.89 -0.14 0.51 16 13 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 23 H 0.05 0.46 6.65 -51.93 -0.35 0.11 16 24 H 0.40 2.52 6.96 -40.82 -0.28 2.24 16 25 H 0.40 2.22 8.86 -40.82 -0.36 1.85 16 26 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 28 H 0.40 5.65 6.44 -40.82 -0.26 5.39 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 293.95 15.07 4.43 4.43 Total: -1.00 -32.56 293.95 -8.27 -40.83 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.94 Total: 4.01 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.31 Total: -11.63 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.57 Total: -54.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.56 -8.27 -40.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.890 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds