Wall clock time and date at job start Sun Mar 29 2020 21:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39167 * 120.49417 * 2 1 4 4 N 1.39202 * 120.82136 * 0.02562 * 3 2 1 5 5 C 1.39644 * 118.35496 * 180.02562 * 3 2 1 6 6 C 1.37769 * 119.23053 * 0.02562 * 5 3 2 7 7 N 1.32060 * 120.93576 * 359.97161 * 6 5 3 8 8 C 1.32544 * 121.80310 * 359.75258 * 7 6 5 9 9 N 1.39033 * 119.66835 * 180.26893 * 8 7 6 10 10 C 1.46495 * 120.00177 * 0.27006 * 9 8 7 11 11 C 1.52997 * 109.47742 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47635 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47596 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99370 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00452 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99834 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00351 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47006 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47149 * 120.00232 * 17 15 13 20 20 H 1.48492 * 109.47651 * 240.00552 * 17 15 13 21 21 H 1.08999 * 109.47015 * 90.00438 * 1 2 3 22 22 H 1.09000 * 109.46646 * 209.99591 * 1 2 3 23 23 H 1.09000 * 109.47248 * 330.00308 * 1 2 3 24 24 H 0.96997 * 120.00278 * 0.02562 * 4 3 2 25 25 H 0.97003 * 119.99546 * 179.97438 * 4 3 2 26 26 H 1.08004 * 120.38733 * 180.02562 * 5 3 2 27 27 H 1.08003 * 119.53390 * 179.97438 * 6 5 3 28 28 H 0.97007 * 120.00220 * 180.27479 * 9 8 7 29 29 H 1.09006 * 109.47060 * 300.00487 * 10 9 8 30 30 H 1.09000 * 109.46966 * 59.99680 * 10 9 8 31 31 H 1.09006 * 109.47097 * 300.00288 * 11 10 9 32 32 H 1.09000 * 109.46863 * 59.99389 * 11 10 9 33 33 H 1.09006 * 109.46986 * 300.00201 * 12 11 10 34 34 H 1.09000 * 109.47146 * 59.99459 * 12 11 10 35 35 H 0.96995 * 119.99698 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2133 1.1992 0.0000 4 7 1.5451 2.4204 0.0005 5 6 3.6087 1.1470 -0.0005 6 6 4.2361 -0.0795 -0.0016 7 7 3.5369 -1.1998 -0.0015 8 6 2.2114 -1.1958 0.0044 9 7 1.5197 -2.4019 0.0099 10 6 2.2557 -3.6685 0.0150 11 6 1.2649 -4.8343 0.0198 12 6 2.0336 -6.1570 0.0258 13 6 1.0577 -7.3053 0.0312 14 1 -0.0047 -7.1109 0.0299 15 6 1.5209 -8.6038 0.0366 16 7 2.8147 -8.8404 0.0376 17 14 0.3112 -10.0271 0.0439 18 1 -1.0762 -9.4975 0.0420 19 1 0.5231 -10.8631 -1.1651 20 1 0.5248 -10.8522 1.2599 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 0.5754 2.4427 0.0013 25 1 2.0494 3.2490 0.0009 26 1 4.1895 2.0577 -0.0002 27 1 5.3152 -0.1255 -0.0025 28 1 0.5496 -2.4046 0.0102 29 1 2.8823 -3.7282 -0.8750 30 1 2.8829 -3.7206 0.9050 31 1 0.6380 -4.7747 0.9096 32 1 0.6380 -4.7819 -0.8704 33 1 2.6608 -6.2168 -0.8637 34 1 2.6602 -6.2091 0.9162 35 1 3.1406 -9.7540 0.0417 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:17 Heat of formation + Delta-G solvation = -4.918908 kcal Electronic energy + Delta-G solvation = -15715.332716 eV Core-core repulsion = 13132.239777 eV Total energy + Delta-G solvation = -2583.092939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18868 -37.74991 -36.25987 -35.46143 -33.76393 -31.94152 -30.37743 -28.43617 -27.49014 -24.98387 -22.97414 -22.57327 -21.96132 -18.87416 -18.59280 -18.26164 -16.55446 -16.39595 -16.35290 -16.15878 -15.71729 -15.33485 -14.85052 -14.36461 -14.21210 -13.86940 -13.68649 -13.41915 -13.20588 -12.82450 -12.51284 -12.41120 -12.38023 -12.20504 -11.69143 -11.47753 -11.16182 -10.80153 -10.55765 -10.15298 -8.78966 -8.51205 -8.19275 -6.30944 0.55121 0.88050 1.41301 1.41812 1.55198 2.34971 2.44776 3.01599 3.14021 3.15518 3.81671 4.12538 4.20251 4.27783 4.33057 4.36515 4.60952 4.70405 4.77696 4.82765 5.01040 5.10059 5.14556 5.18473 5.25296 5.29628 5.50111 5.67684 5.71783 5.84385 6.21500 6.35125 6.47890 6.64350 6.86223 6.98346 7.38403 7.57532 8.93152 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.055454 B = 0.003987 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.797723 B = 7021.045320 C = 7494.785332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.301 4.301 3 C 0.281 3.719 4 N -0.848 5.848 5 C -0.305 4.305 6 C 0.160 3.840 7 N -0.614 5.614 8 C 0.413 3.587 9 N -0.720 5.720 10 C 0.152 3.848 11 C -0.104 4.104 12 C 0.027 3.973 13 C -0.542 4.542 14 H 0.064 0.936 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.278 1.278 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.407 0.593 25 H 0.412 0.588 26 H 0.152 0.848 27 H 0.169 0.831 28 H 0.412 0.588 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.061 0.939 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 23.735 -0.057 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 C 0.166 3.834 4 N -0.389 5.389 5 C -0.333 4.333 6 C 0.003 3.997 7 N -0.336 5.336 8 C 0.178 3.822 9 N -0.354 5.354 10 C 0.027 3.973 11 C -0.141 4.141 12 C -0.011 4.011 13 C -0.580 4.580 14 H 0.082 0.918 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.204 1.204 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.238 0.762 25 H 0.243 0.757 26 H 0.170 0.830 27 H 0.186 0.814 28 H 0.251 0.749 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.504 22.623 -0.059 22.893 hybrid contribution -0.871 -0.055 0.013 0.873 sum -4.375 22.568 -0.047 22.988 Atomic orbital electron populations 1.20358 0.89225 1.02831 1.02094 1.19671 0.97818 0.90813 1.23098 1.17590 0.91451 0.86363 0.88027 1.42343 1.09917 1.04139 1.82491 1.21488 0.92893 1.00031 1.18859 1.22508 1.00256 0.86576 0.90322 1.67262 1.06769 1.33307 1.26238 1.18231 0.88450 0.85985 0.89522 1.44662 1.08429 1.02165 1.80143 1.20982 0.94191 0.82124 0.99954 1.21601 0.97729 0.93406 1.01411 1.18911 0.95072 0.92087 0.95023 1.21706 0.93781 0.91996 1.50495 0.91798 1.26033 0.97080 1.02266 0.94722 1.70124 1.14615 1.21044 1.51677 0.85344 0.79195 0.78433 0.77724 1.18352 1.20425 1.20416 0.91497 0.92234 0.90315 0.76159 0.75746 0.83014 0.81440 0.74912 0.93945 0.93965 0.92040 0.92030 0.98948 0.98946 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.18 71.24 0.65 -0.94 16 2 C -0.30 -7.54 5.93 -19.51 -0.12 -7.65 16 3 C 0.28 5.87 6.79 38.53 0.26 6.14 16 4 N -0.85 -10.11 8.99 -51.05 -0.46 -10.57 16 5 C -0.30 -6.45 9.99 22.50 0.22 -6.23 16 6 C 0.16 4.22 11.16 84.55 0.94 5.16 16 7 N -0.61 -20.94 9.56 -193.55 -1.85 -22.79 16 8 C 0.41 13.25 7.46 132.93 0.99 14.24 16 9 N -0.72 -23.35 5.61 -345.25 -1.94 -25.29 16 10 C 0.15 5.92 5.69 86.38 0.49 6.41 16 11 C -0.10 -4.35 5.27 30.59 0.16 -4.19 16 12 C 0.03 1.46 4.97 29.85 0.15 1.60 16 13 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 14 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 16 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 17 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.06 1.12 6.55 -2.39 -0.02 1.10 16 23 H 0.08 1.03 6.65 -2.39 -0.02 1.02 16 24 H 0.41 3.61 6.96 -92.71 -0.65 2.96 16 25 H 0.41 2.96 8.86 -92.71 -0.82 2.13 16 26 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 27 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.41 11.39 6.44 -92.70 -0.60 10.80 16 29 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -71.63 293.95 1.57 -70.06 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.95 Total: 15.91 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.46 Total: -16.26 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -3.96 Total: -116.46 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.63 1.57 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.140 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds