Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38558 * 120.36877 * 2 1 4 4 C 1.38509 * 118.58562 * 180.02562 * 3 2 1 5 5 C 1.39002 * 119.26148 * 0.02562 * 4 3 2 6 6 N 1.38990 * 119.65809 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00453 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47714 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47236 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47080 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00039 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00004 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99928 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00183 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46865 * 90.00183 * 14 12 10 16 16 H 1.48495 * 109.47684 * 210.00193 * 14 12 10 17 17 H 1.48498 * 109.47190 * 330.00579 * 14 12 10 18 18 N 1.32464 * 120.68395 * 359.97438 * 5 4 3 19 19 C 1.32504 * 121.52302 * 359.97438 * 18 5 4 20 20 N 1.38995 * 119.65447 * 180.02562 * 19 18 5 21 21 H 1.09006 * 109.47315 * 269.97909 * 1 2 3 22 22 H 1.09005 * 109.47302 * 29.97355 * 1 2 3 23 23 H 1.08998 * 109.47443 * 149.97231 * 1 2 3 24 24 H 1.07996 * 120.70714 * 0.04756 * 3 2 1 25 25 H 1.08006 * 120.36933 * 179.97438 * 4 3 2 26 26 H 0.97002 * 119.99999 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.46979 * 300.00684 * 7 6 5 28 28 H 1.09004 * 109.46690 * 59.99736 * 7 6 5 29 29 H 1.09001 * 109.46993 * 300.00339 * 8 7 6 30 30 H 1.08994 * 109.46710 * 59.99818 * 8 7 6 31 31 H 1.09001 * 109.47191 * 299.99954 * 9 8 7 32 32 H 1.09002 * 109.47485 * 60.00394 * 9 8 7 33 33 H 0.96994 * 120.00288 * 179.97438 * 13 12 10 34 34 H 0.97000 * 120.00616 * 0.02562 * 20 19 18 35 35 H 0.97004 * 119.99575 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1955 0.0000 4 6 3.5919 1.1524 -0.0005 5 6 4.2333 -0.0808 -0.0016 6 7 5.6222 -0.1337 -0.0027 7 6 6.4025 1.1062 -0.0022 8 6 7.8950 0.7697 -0.0029 9 6 8.7098 2.0646 -0.0017 10 6 10.1799 1.7330 -0.0031 11 1 10.5009 0.7018 -0.0043 12 6 11.1151 2.7462 -0.0018 13 7 12.3980 2.4568 -0.0036 14 14 10.5599 4.5297 0.0009 15 1 10.4132 5.0002 1.4018 16 1 11.5702 5.3638 -0.6981 17 1 9.2549 4.6430 -0.6985 18 7 3.5345 -1.2062 -0.0016 19 6 2.2095 -1.1989 -0.0001 20 7 1.5151 -2.4030 0.0004 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6851 2.1407 0.0008 25 1 4.1667 2.0668 -0.0010 26 1 6.0749 -0.9916 -0.0031 27 1 6.1604 1.6882 -0.8913 28 1 6.1617 1.6866 0.8886 29 1 8.1367 0.1878 0.8865 30 1 8.1360 0.1891 -0.8934 31 1 8.4682 2.6467 -0.8910 32 1 8.4687 2.6448 0.8890 33 1 13.0559 3.1695 -0.0031 34 1 2.0005 -3.2429 0.0000 35 1 0.5451 -2.4035 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = 1.114864 kcal Electronic energy + Delta-G solvation = -15581.609092 eV Core-core repulsion = 12998.777797 eV Total energy + Delta-G solvation = -2582.831295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18497 -38.03780 -35.95635 -34.77163 -34.18389 -32.81037 -30.55752 -28.99281 -26.53170 -24.69322 -23.83072 -22.21395 -21.82120 -19.01648 -18.78054 -18.24038 -16.66573 -16.44697 -16.40553 -16.07361 -15.45788 -15.44166 -14.96019 -14.73854 -14.12968 -13.90309 -13.70330 -13.46551 -13.23910 -12.77605 -12.71101 -12.32282 -12.04013 -11.79123 -11.70858 -11.49825 -11.32333 -10.75465 -10.69877 -10.36030 -9.50016 -8.28516 -8.15937 -6.33523 0.65506 0.70421 1.39147 1.41127 1.53133 2.14140 2.38281 2.93168 3.07240 3.11680 3.93851 4.09252 4.22280 4.22463 4.38052 4.38750 4.54540 4.65739 4.84982 4.91595 4.92308 4.95687 5.03026 5.20578 5.25797 5.45797 5.57183 5.59929 5.64910 5.73959 6.04309 6.28458 6.46397 6.61341 6.75189 6.86707 7.31306 7.52875 8.88482 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.055743 B = 0.003968 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.181206 B = 7054.193221 C = 7525.323857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.277 4.277 3 C -0.001 4.001 4 C -0.308 4.308 5 C 0.424 3.576 6 N -0.725 5.725 7 C 0.140 3.860 8 C -0.103 4.103 9 C -0.008 4.008 10 C -0.536 4.536 11 H 0.029 0.971 12 C 0.000 4.000 13 N -0.954 5.954 14 Si 0.954 3.046 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.240 1.240 18 N -0.629 5.629 19 C 0.429 3.571 20 N -0.841 5.841 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.155 0.845 25 H 0.133 0.867 26 H 0.401 0.599 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.404 0.596 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.979 -3.331 -0.017 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.286 4.286 3 C -0.026 4.026 4 C -0.335 4.335 5 C 0.187 3.813 6 N -0.356 5.356 7 C 0.016 3.984 8 C -0.141 4.141 9 C -0.046 4.046 10 C -0.574 4.574 11 H 0.048 0.952 12 C -0.196 4.196 13 N -0.595 5.595 14 Si 0.777 3.223 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.163 1.163 18 N -0.357 5.357 19 C 0.190 3.810 20 N -0.387 5.387 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.173 0.827 25 H 0.151 0.849 26 H 0.236 0.764 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.233 0.767 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -26.291 -3.807 -0.023 26.565 hybrid contribution 0.507 0.469 0.028 0.691 sum -25.784 -3.338 0.005 25.999 Atomic orbital electron populations 1.20449 0.88492 1.03156 1.02265 1.20170 0.98370 0.91745 1.18277 1.21274 0.92530 0.98485 0.90323 1.21310 0.96104 0.96842 1.19269 1.18148 0.84997 0.89061 0.89074 1.44672 1.01637 1.09359 1.79953 1.21393 0.89814 0.85505 1.01691 1.21465 0.92405 0.98840 1.01388 1.19438 0.93026 0.94888 0.97224 1.21506 0.91880 0.93479 1.50508 0.95237 1.26091 0.94645 1.04846 0.94024 1.70079 1.02002 1.34739 1.52698 0.85596 0.79291 0.78102 0.79299 1.19068 1.21223 1.16337 1.66400 1.07858 1.30838 1.30623 1.18035 0.86657 0.87677 0.88656 1.42240 1.09382 1.04331 1.82747 0.91369 0.90756 0.91323 0.82711 0.84932 0.76450 0.91471 0.91423 0.92710 0.92716 0.95471 0.95591 0.92504 0.76681 0.74759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.58 71.23 0.68 -0.39 16 2 C -0.28 -5.76 5.92 -19.62 -0.12 -5.87 16 3 C 0.00 -0.02 9.84 22.41 0.22 0.20 16 4 C -0.31 -8.19 9.32 22.52 0.21 -7.98 16 5 C 0.42 12.84 7.65 133.02 1.02 13.86 16 6 N -0.72 -21.92 5.73 -345.15 -1.98 -23.90 16 7 C 0.14 4.27 4.89 86.38 0.42 4.70 16 8 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 9 C -0.01 -0.35 4.04 29.84 0.12 -0.23 16 10 C -0.54 -30.91 9.66 25.60 0.25 -30.66 16 11 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 12 C 0.00 0.02 5.47 84.66 0.46 0.48 16 13 N -0.95 -60.39 13.96 21.45 0.30 -60.10 16 14 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 17 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 18 N -0.63 -18.78 10.42 -190.69 -1.99 -20.77 16 19 C 0.43 10.37 7.73 132.99 1.03 11.40 16 20 N -0.84 -13.56 8.98 -55.49 -0.50 -14.06 16 21 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 22 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 23 H 0.07 0.64 6.55 -2.39 -0.02 0.63 16 24 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 25 H 0.13 3.28 6.69 -2.91 -0.02 3.26 16 26 H 0.40 12.02 8.60 -92.71 -0.80 11.22 16 27 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 28 H 0.07 1.97 7.92 -2.38 -0.02 1.95 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 32 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.40 6.07 8.95 -92.71 -0.83 5.24 16 35 H 0.42 4.18 6.79 -92.71 -0.63 3.55 16 Total: -1.00 -70.13 291.74 0.98 -69.15 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -1.19 Total: 22.28 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.46 Total: -18.20 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -4.16 Total: -118.83 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -70.13 0.98 -69.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.267 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds