Wall clock time and date at job start Sun Mar 29 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46517 * 2 1 4 4 N 1.32281 * 120.49372 * 269.97249 * 3 2 1 5 5 C 1.31776 * 120.89686 * 180.02562 * 4 3 2 6 6 N 1.31814 * 121.93458 * 0.02562 * 5 4 3 7 7 C 1.32248 * 120.89472 * 0.02562 * 6 5 4 8 8 C 1.39248 * 120.49382 * 90.00644 * 3 2 1 9 9 N 1.39738 * 120.87961 * 359.97438 * 8 3 2 10 10 C 1.46500 * 120.00595 * 179.97438 * 9 8 3 11 11 C 1.52999 * 109.47248 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46931 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46925 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99914 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00233 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99489 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00333 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47413 * 59.99598 * 17 15 13 19 19 H 1.48501 * 109.47305 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46744 * 299.99658 * 17 15 13 21 21 H 1.08996 * 109.47530 * 59.99918 * 1 2 3 22 22 H 1.08997 * 109.46857 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46784 * 299.99644 * 1 2 3 24 24 H 1.08995 * 109.47048 * 240.00370 * 2 1 3 25 25 H 1.08997 * 109.47100 * 119.99439 * 2 1 3 26 26 H 1.07998 * 119.03324 * 180.28728 * 5 4 3 27 27 H 1.08004 * 120.49342 * 180.02562 * 7 6 5 28 28 H 0.97005 * 119.99858 * 359.97438 * 9 8 3 29 29 H 1.08998 * 109.46877 * 300.00500 * 10 9 8 30 30 H 1.09007 * 109.46566 * 59.99984 * 10 9 8 31 31 H 1.08994 * 109.47332 * 300.00030 * 11 10 9 32 32 H 1.08997 * 109.46640 * 59.99985 * 11 10 9 33 33 H 1.08994 * 109.47284 * 300.00239 * 12 11 10 34 34 H 1.08994 * 109.46830 * 60.00600 * 12 11 10 35 35 H 0.96999 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2564 2.0536 -1.1398 5 6 2.6960 3.2959 -1.1491 6 7 2.9314 3.9605 -0.0354 7 6 2.7334 3.3987 1.1454 8 6 2.2678 2.0871 1.1999 9 7 2.0444 1.4560 2.4264 10 6 2.2991 2.1747 3.6773 11 6 1.9760 1.2642 4.8637 12 6 2.2427 2.0147 6.1700 13 6 1.9250 1.1177 7.3385 14 1 1.5681 0.1129 7.1666 15 6 2.0889 1.5799 8.6271 16 7 2.5230 2.8036 8.8364 17 14 1.6958 0.4678 10.0755 18 1 2.5534 -0.7431 10.0170 19 1 1.9534 1.1966 11.3435 20 1 0.2673 0.0660 10.0176 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 2.8644 3.7852 -2.0970 27 1 2.9281 3.9495 2.0538 28 1 1.7205 0.5419 2.4497 29 1 3.3477 2.4694 3.7199 30 1 1.6699 3.0638 3.7201 31 1 0.9274 0.9700 4.8208 32 1 2.6049 0.3750 4.8209 33 1 3.2914 2.3086 6.2126 34 1 1.6141 2.9041 6.2129 35 1 2.6387 3.1287 9.7429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:11 Heat of formation + Delta-G solvation = 21.773259 kcal Electronic energy + Delta-G solvation = -15808.345494 eV Core-core repulsion = 13226.410015 eV Total energy + Delta-G solvation = -2581.935480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98835 -36.88935 -35.07512 -33.80950 -32.24444 -31.42620 -29.26260 -26.61244 -25.22177 -23.81547 -22.32603 -21.85512 -20.52484 -17.83893 -16.90983 -16.55855 -16.29148 -15.30853 -14.79792 -14.53744 -14.44915 -14.09712 -13.78466 -13.32473 -12.62996 -12.36289 -12.34142 -11.98897 -11.72844 -11.42825 -11.06732 -11.01212 -10.82985 -10.64326 -10.57985 -10.43908 -9.87258 -9.57229 -9.23343 -9.08045 -8.44015 -7.58303 -6.08948 -4.12323 1.13320 1.25984 3.27631 3.32703 3.33526 3.38877 3.90790 4.13526 4.38430 4.39387 4.46162 4.84387 5.02357 5.15289 5.18249 5.27168 5.43439 5.55651 5.56406 5.69091 5.76459 5.90990 5.94798 6.03882 6.33763 6.43860 6.54599 6.85258 6.97054 7.25465 7.53169 7.61158 7.64940 7.88700 8.27159 8.29885 8.93737 9.52451 11.02271 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040248 B = 0.004333 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.518744 B = 6459.926231 C = 7054.746048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C 0.093 3.907 4 N -0.481 5.481 5 C 0.214 3.786 6 N -0.482 5.482 7 C 0.067 3.933 8 C 0.131 3.869 9 N -0.724 5.724 10 C 0.114 3.886 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.188 0.812 27 H 0.166 0.834 28 H 0.402 0.598 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 -3.200 -16.268 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.060 4.060 4 N -0.194 5.194 5 C -0.075 4.075 6 N -0.195 5.195 7 C -0.105 4.105 8 C 0.019 3.981 9 N -0.351 5.351 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.204 0.796 27 H 0.183 0.817 28 H 0.238 0.762 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.469 -2.487 -16.805 17.052 hybrid contribution -0.395 -1.165 1.720 2.115 sum -1.864 -3.653 -15.085 15.633 Atomic orbital electron populations 1.21719 0.93983 1.02185 1.02483 1.20332 0.96576 0.90252 1.03442 1.21166 1.00497 0.97429 0.86934 1.67963 1.11335 1.10728 1.29353 1.24401 0.98435 0.88030 0.96679 1.68157 1.14394 1.38213 0.98709 1.22811 0.99724 0.91274 0.96703 1.19555 0.95908 0.94500 0.88154 1.45061 1.71288 1.16543 1.02252 1.21780 1.00517 0.96243 0.82365 1.21856 1.00742 0.98425 0.94757 1.19023 0.97348 0.95542 0.89365 1.21147 1.44774 0.99485 0.90922 0.92703 1.25015 0.95134 0.95102 0.99082 1.69944 1.46008 1.15986 1.21322 0.86636 0.78888 0.80656 0.81700 1.20210 1.21211 1.20217 0.92205 0.91773 0.92505 0.89626 0.90569 0.79551 0.81738 0.76151 0.92017 0.92009 0.92610 0.92627 0.96269 0.96271 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.07 -0.68 5.87 -27.88 -0.16 -0.85 16 3 C 0.09 1.21 6.10 -82.02 -0.50 0.71 16 4 N -0.48 -6.53 10.37 -10.65 -0.11 -6.64 16 5 C 0.21 2.80 12.28 -92.15 -1.13 1.67 16 6 N -0.48 -6.94 10.43 -14.42 -0.15 -7.09 16 7 C 0.07 0.95 10.59 -16.98 -0.18 0.77 16 8 C 0.13 1.77 6.67 -83.49 -0.56 1.21 16 9 N -0.72 -9.43 5.65 -58.42 -0.33 -9.76 16 10 C 0.11 1.71 4.96 -4.04 -0.02 1.69 16 11 C -0.12 -2.18 5.27 -26.73 -0.14 -2.32 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.53 -14.21 9.11 -34.44 -0.31 -14.52 16 14 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.69 6.66 -51.93 -0.35 0.34 16 26 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.17 2.15 6.91 -52.48 -0.36 1.79 16 28 H 0.40 4.69 6.63 -40.82 -0.27 4.42 16 29 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 30 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -29.87 297.22 -8.43 -38.30 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.16 Total: 0.69 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.87 Total: -10.63 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.15 Total: -48.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.87 -8.43 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.072 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds