Wall clock time and date at job start Sun Mar 29 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46517 * 2 1 4 4 N 1.32281 * 120.49372 * 269.97249 * 3 2 1 5 5 C 1.31776 * 120.89686 * 180.02562 * 4 3 2 6 6 N 1.31814 * 121.93458 * 0.02562 * 5 4 3 7 7 C 1.32248 * 120.89472 * 0.02562 * 6 5 4 8 8 C 1.39248 * 120.49382 * 90.00644 * 3 2 1 9 9 N 1.39738 * 120.87961 * 359.97438 * 8 3 2 10 10 C 1.46500 * 120.00595 * 179.97438 * 9 8 3 11 11 C 1.52999 * 109.47248 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46931 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46925 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99914 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00233 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99489 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00333 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47413 * 59.99598 * 17 15 13 19 19 H 1.48501 * 109.47305 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46744 * 299.99658 * 17 15 13 21 21 H 1.08996 * 109.47530 * 59.99918 * 1 2 3 22 22 H 1.08997 * 109.46857 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46784 * 299.99644 * 1 2 3 24 24 H 1.08995 * 109.47048 * 240.00370 * 2 1 3 25 25 H 1.08997 * 109.47100 * 119.99439 * 2 1 3 26 26 H 1.07998 * 119.03324 * 180.28728 * 5 4 3 27 27 H 1.08004 * 120.49342 * 180.02562 * 7 6 5 28 28 H 0.97005 * 119.99858 * 359.97438 * 9 8 3 29 29 H 1.08998 * 109.46877 * 300.00500 * 10 9 8 30 30 H 1.09007 * 109.46566 * 59.99984 * 10 9 8 31 31 H 1.08994 * 109.47332 * 300.00030 * 11 10 9 32 32 H 1.08997 * 109.46640 * 59.99985 * 11 10 9 33 33 H 1.08994 * 109.47284 * 300.00239 * 12 11 10 34 34 H 1.08994 * 109.46830 * 60.00600 * 12 11 10 35 35 H 0.96999 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2564 2.0536 -1.1398 5 6 2.6960 3.2959 -1.1491 6 7 2.9314 3.9605 -0.0354 7 6 2.7334 3.3987 1.1454 8 6 2.2678 2.0871 1.1999 9 7 2.0444 1.4560 2.4264 10 6 2.2991 2.1747 3.6773 11 6 1.9760 1.2642 4.8637 12 6 2.2427 2.0147 6.1700 13 6 1.9250 1.1177 7.3385 14 1 1.5681 0.1129 7.1666 15 6 2.0889 1.5799 8.6271 16 7 2.5230 2.8036 8.8364 17 14 1.6958 0.4678 10.0755 18 1 2.5534 -0.7431 10.0170 19 1 1.9534 1.1966 11.3435 20 1 0.2673 0.0660 10.0176 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 2.8644 3.7852 -2.0970 27 1 2.9281 3.9495 2.0538 28 1 1.7205 0.5419 2.4497 29 1 3.3477 2.4694 3.7199 30 1 1.6699 3.0638 3.7201 31 1 0.9274 0.9700 4.8208 32 1 2.6049 0.3750 4.8209 33 1 3.2914 2.3086 6.2126 34 1 1.6141 2.9041 6.2129 35 1 2.6387 3.1287 9.7429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:11 Heat of formation + Delta-G solvation = 4.254167 kcal Electronic energy + Delta-G solvation = -15809.105179 eV Core-core repulsion = 13226.410015 eV Total energy + Delta-G solvation = -2582.695164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.01345 -38.07766 -36.14250 -35.47378 -33.71293 -32.63107 -30.52361 -28.19012 -26.22734 -25.27087 -23.56740 -22.88960 -22.04709 -18.98624 -18.39580 -17.88141 -17.54576 -16.51652 -16.49044 -15.87675 -15.67174 -15.00455 -14.71364 -14.40664 -14.14317 -13.90303 -13.73827 -13.45673 -12.80022 -12.59052 -12.48565 -12.47146 -12.29537 -12.02655 -11.86986 -11.47959 -11.45094 -11.34626 -11.19772 -10.54137 -10.12824 -8.64021 -8.19779 -6.30408 0.09578 0.21908 1.42017 1.43874 1.51812 2.25676 2.43166 2.88197 3.14504 3.21897 3.42731 3.45748 3.84217 4.12094 4.21882 4.23598 4.30091 4.39239 4.56158 4.66279 4.86402 4.95115 4.95657 5.00509 5.10368 5.16770 5.28956 5.45258 5.51820 5.72416 5.84782 5.87345 6.17229 6.25346 6.61124 6.86764 7.24293 7.39155 8.91717 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040248 B = 0.004333 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.518744 B = 6459.926231 C = 7054.746048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C 0.095 3.905 4 N -0.492 5.492 5 C 0.211 3.789 6 N -0.500 5.500 7 C 0.052 3.948 8 C 0.122 3.878 9 N -0.716 5.716 10 C 0.129 3.871 11 C -0.103 4.103 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.962 3.038 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.051 0.949 22 H 0.084 0.916 23 H 0.048 0.952 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.215 0.785 27 H 0.168 0.832 28 H 0.410 0.590 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H -0.004 1.004 34 H -0.004 1.004 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 -4.838 -16.929 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.059 4.059 4 N -0.205 5.205 5 C -0.078 4.078 6 N -0.213 5.213 7 C -0.119 4.119 8 C 0.011 3.989 9 N -0.346 5.346 10 C 0.005 3.995 11 C -0.141 4.141 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.192 1.192 21 H 0.070 0.930 22 H 0.103 0.897 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.231 0.769 27 H 0.185 0.815 28 H 0.249 0.751 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.028 -4.140 -17.488 18.085 hybrid contribution -0.215 -0.631 1.848 1.965 sum -2.243 -4.771 -15.640 16.505 Atomic orbital electron populations 1.21685 0.93223 1.03305 1.01670 1.20453 0.97083 0.88553 1.04472 1.21664 0.99203 0.98526 0.86479 1.68073 1.11896 1.11004 1.29540 1.25007 0.97338 0.88056 0.97394 1.68192 1.15274 1.38765 0.99108 1.22963 1.00110 0.91846 0.96981 1.19560 0.96464 0.94443 0.88403 1.44751 1.71725 1.16756 1.01359 1.21426 1.00388 0.95510 0.82197 1.21558 1.01273 0.98295 0.93005 1.18927 0.95324 0.95034 0.91973 1.21659 1.44234 1.00175 0.92081 0.91942 1.25940 0.95026 0.96511 1.02254 1.70079 1.47357 1.17891 1.21936 0.85546 0.79117 0.78774 0.77894 1.19190 1.21138 1.19198 0.92976 0.89711 0.93322 0.88815 0.89302 0.76884 0.81527 0.75141 0.92186 0.92204 0.91925 0.91934 0.98539 0.98545 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.07 -1.20 5.87 29.85 0.18 -1.03 16 3 C 0.10 2.30 6.10 42.74 0.26 2.56 16 4 N -0.49 -12.60 10.37 -187.61 -1.95 -14.55 16 5 C 0.21 5.25 12.28 180.88 2.22 7.47 16 6 N -0.50 -14.05 10.43 -199.55 -2.08 -16.13 16 7 C 0.05 1.45 10.59 84.88 0.90 2.35 16 8 C 0.12 3.17 6.67 38.38 0.26 3.42 16 9 N -0.72 -17.60 5.65 -338.74 -1.92 -19.52 16 10 C 0.13 3.78 4.96 86.38 0.43 4.21 16 11 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 12 C 0.03 1.23 4.97 29.85 0.15 1.37 16 13 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 17 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 1.36 6.66 -2.39 -0.02 1.35 16 26 H 0.21 3.83 8.06 -2.91 -0.02 3.81 16 27 H 0.17 4.37 6.91 -2.91 -0.02 4.35 16 28 H 0.41 8.68 6.63 -92.70 -0.61 8.07 16 29 H 0.06 1.79 8.00 -2.39 -0.02 1.77 16 30 H 0.06 1.79 8.00 -2.38 -0.02 1.77 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -63.36 297.22 2.79 -60.57 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.46 Total: 13.11 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 5.96 Total: -13.36 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.66 Total: -105.16 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.36 2.79 -60.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.828 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds