Wall clock time and date at job start Sun Mar 29 2020 22:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 5 5 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 6 6 C 1.52997 * 109.47060 * 174.99999 * 5 2 1 7 7 N 1.46500 * 109.47473 * 180.02562 * 6 5 2 8 8 C 1.38820 * 120.00304 * 179.97438 * 7 6 5 9 9 C 1.39804 * 119.58517 * 359.97438 * 8 7 6 10 10 C 1.38588 * 119.49214 * 179.97438 * 9 8 7 11 11 C 1.38385 * 118.68243 * 0.02562 * 10 9 8 12 12 C 1.40564 * 119.14967 * 359.97438 * 11 10 9 13 13 C 1.41305 * 119.78284 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00620 * 0.02562 * 13 12 11 15 15 C 1.40032 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.30745 * 119.99844 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00270 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47241 * 59.99925 * 17 15 13 19 19 H 1.48500 * 109.46955 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46914 * 299.99740 * 17 15 13 21 21 N 1.31952 * 119.58760 * 179.72637 * 8 7 6 22 22 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 25 25 H 1.00897 * 111.00586 * 299.99616 * 4 2 1 26 26 H 1.00905 * 111.00367 * 63.95512 * 4 2 1 27 27 H 1.09002 * 109.47398 * 295.00168 * 5 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 5 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 31 31 H 0.97004 * 119.99396 * 0.02562 * 7 6 5 32 32 H 1.08002 * 120.24904 * 359.96026 * 9 8 7 33 33 H 1.08004 * 120.66278 * 180.02562 * 10 9 8 34 34 H 1.08004 * 120.43199 * 179.97438 * 11 10 9 35 35 H 0.96996 * 119.99889 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0399 -0.7213 -1.2493 6 6 3.5647 -0.6133 -1.3138 7 7 4.0530 -1.3034 -2.5103 8 6 5.4135 -1.3397 -2.7841 9 6 6.3099 -0.7144 -1.9123 10 6 7.6677 -0.7523 -2.1872 11 6 8.0968 -1.4127 -3.3252 12 6 7.1464 -2.0221 -4.1626 13 6 7.5697 -2.6994 -5.3282 14 1 8.6205 -2.7481 -5.5731 15 6 6.6268 -3.3077 -6.1659 16 7 5.3547 -3.2483 -5.8698 17 14 7.1863 -4.2038 -7.7065 18 1 8.0997 -5.3125 -7.3301 19 1 6.0038 -4.7561 -8.4149 20 1 7.9002 -3.2555 -8.5989 21 7 5.8447 -1.9682 -3.8612 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.6962 -0.2351 2.0386 26 1 1.7502 -1.6650 1.1909 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 3.8531 0.4369 -1.3574 30 1 3.9994 -1.0728 -0.4261 31 1 3.4256 -1.7343 -3.1116 32 1 5.9470 -0.2055 -1.0316 33 1 8.3770 -0.2760 -1.5265 34 1 9.1484 -1.4593 -3.5668 35 1 4.7015 -3.6693 -6.4503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170891267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:04 Heat of formation + Delta-G solvation = 24.666306 kcal Electronic energy + Delta-G solvation = -16019.118462 eV Core-core repulsion = 13437.308434 eV Total energy + Delta-G solvation = -2581.810028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.25235 -37.16249 -34.67278 -33.15689 -30.56793 -29.94744 -28.88288 -27.47367 -25.24926 -23.00446 -21.45482 -20.47740 -20.16772 -17.25784 -16.55605 -16.00596 -14.92474 -14.86408 -14.54946 -14.17574 -13.80832 -13.51994 -13.23551 -12.86572 -12.75502 -12.28274 -11.93861 -11.77819 -11.26166 -11.05359 -11.00348 -10.94150 -10.82822 -10.52088 -10.33538 -9.84710 -9.38585 -8.83744 -8.71297 -7.81330 -7.41765 -6.38651 -6.24886 -4.39461 2.96036 3.14116 3.17192 3.33347 3.38326 4.03826 4.24131 4.45699 4.88743 4.92415 4.94421 5.19584 5.38706 5.53721 5.63059 5.78309 5.94596 5.96450 6.13515 6.25371 6.38518 6.50088 6.71377 6.96442 6.98777 7.04928 7.05810 7.33473 7.34215 7.70209 7.91986 8.02469 8.25082 8.47608 8.79872 8.89272 9.22235 10.33579 10.49120 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.005401 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.956553 B = 5183.080354 C = 5924.254139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.082 0.918 4 N -0.842 5.842 5 C -0.123 4.123 6 C 0.148 3.852 7 N -0.742 5.742 8 C 0.411 3.589 9 C -0.364 4.364 10 C -0.033 4.033 11 C -0.319 4.319 12 C 0.293 3.707 13 C -0.437 4.437 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.718 5.718 17 Si 0.904 3.096 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.266 1.266 21 N -0.533 5.533 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.338 0.662 26 H 0.340 0.660 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 3.443 7.738 12.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.022 4.022 3 H 0.100 0.900 4 N -0.371 5.371 5 C -0.161 4.161 6 C 0.023 3.977 7 N -0.378 5.378 8 C 0.171 3.829 9 C -0.390 4.390 10 C -0.057 4.057 11 C -0.342 4.342 12 C 0.166 3.834 13 C -0.470 4.470 14 H 0.100 0.900 15 C -0.153 4.153 16 N -0.340 5.340 17 Si 0.729 3.271 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 N -0.255 5.255 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.150 0.850 26 H 0.153 0.847 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.962 3.271 7.019 11.844 hybrid contribution -0.497 -0.263 -0.090 0.569 sum -9.458 3.008 6.929 12.105 Atomic orbital electron populations 1.22643 0.97869 1.01949 1.02138 1.21381 0.91698 0.98691 0.90454 0.89958 1.58881 1.67478 1.06753 1.03969 1.21805 0.96451 1.00890 0.96955 1.20965 0.91938 0.96298 0.88505 1.44208 1.04379 1.62269 1.26977 1.18547 0.84078 0.89872 0.90380 1.20645 0.93737 1.19211 1.05447 1.20595 0.94298 0.95511 0.95297 1.21521 0.98735 1.13111 1.00817 1.18189 0.85950 0.88106 0.91185 1.19530 0.94406 1.28643 1.04387 0.90014 1.26038 0.94652 0.95639 0.98921 1.70153 1.01295 1.29617 1.32958 0.86454 0.79020 0.80192 0.81446 1.19045 1.20416 1.19046 1.68216 1.16627 1.23908 1.16727 0.92701 0.92840 0.91978 0.84993 0.84741 0.91638 0.91215 0.93704 0.91884 0.77346 0.89054 0.89005 0.88803 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.09 0.91 3.37 -67.71 -0.23 0.68 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 N -0.84 -8.28 8.71 -4.67 -0.04 -8.32 16 5 C -0.12 -1.54 4.94 -26.73 -0.13 -1.67 16 6 C 0.15 2.47 4.77 -4.04 -0.02 2.45 16 7 N -0.74 -15.63 5.72 -60.39 -0.35 -15.97 16 8 C 0.41 10.55 7.65 -155.33 -1.19 9.36 16 9 C -0.36 -8.90 9.34 -38.87 -0.36 -9.26 16 10 C -0.03 -0.79 10.15 -39.40 -0.40 -1.19 16 11 C -0.32 -8.40 9.83 -38.65 -0.38 -8.78 16 12 C 0.29 8.46 6.55 -85.00 -0.56 7.91 16 13 C -0.44 -12.23 9.14 -37.74 -0.34 -12.57 16 14 H 0.08 2.14 7.85 -52.48 -0.41 1.72 16 15 C 0.07 1.90 5.50 -17.34 -0.10 1.81 16 16 N -0.72 -19.61 11.46 55.55 0.64 -18.98 16 17 Si 0.90 19.17 29.56 -169.99 -5.02 14.14 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 N -0.53 -15.30 7.89 -10.33 -0.08 -15.39 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.34 2.66 9.04 -39.29 -0.36 2.31 16 26 H 0.34 3.14 8.98 -39.29 -0.35 2.78 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.77 7.92 -51.93 -0.41 0.35 16 30 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 31 H 0.39 8.18 8.59 -40.82 -0.35 7.83 16 32 H 0.09 2.02 6.68 -52.49 -0.35 1.67 16 33 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 34 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 35 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -30.83 295.21 -8.90 -39.73 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.14 Total: 12.81 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.35 Total: -12.48 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.17 Total: -58.65 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.83 -8.90 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.398 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds