Wall clock time and date at job start Sun Mar 29 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 5 5 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 6 6 C 1.52997 * 109.47060 * 174.99999 * 5 2 1 7 7 N 1.46500 * 109.47473 * 180.02562 * 6 5 2 8 8 C 1.38820 * 120.00304 * 179.97438 * 7 6 5 9 9 C 1.39804 * 119.58517 * 359.97438 * 8 7 6 10 10 C 1.38588 * 119.49214 * 179.97438 * 9 8 7 11 11 C 1.38385 * 118.68243 * 0.02562 * 10 9 8 12 12 C 1.40564 * 119.14967 * 359.97438 * 11 10 9 13 13 C 1.41305 * 119.78284 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00620 * 0.02562 * 13 12 11 15 15 C 1.40032 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.30745 * 119.99844 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00270 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47241 * 59.99925 * 17 15 13 19 19 H 1.48500 * 109.46955 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46914 * 299.99740 * 17 15 13 21 21 N 1.31952 * 119.58760 * 179.72637 * 8 7 6 22 22 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 25 25 H 1.00897 * 111.00586 * 299.99616 * 4 2 1 26 26 H 1.00905 * 111.00367 * 63.95512 * 4 2 1 27 27 H 1.09002 * 109.47398 * 295.00168 * 5 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 5 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 31 31 H 0.97004 * 119.99396 * 0.02562 * 7 6 5 32 32 H 1.08002 * 120.24904 * 359.96026 * 9 8 7 33 33 H 1.08004 * 120.66278 * 180.02562 * 10 9 8 34 34 H 1.08004 * 120.43199 * 179.97438 * 11 10 9 35 35 H 0.96996 * 119.99889 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0399 -0.7213 -1.2493 6 6 3.5647 -0.6133 -1.3138 7 7 4.0530 -1.3034 -2.5103 8 6 5.4135 -1.3397 -2.7841 9 6 6.3099 -0.7144 -1.9123 10 6 7.6677 -0.7523 -2.1872 11 6 8.0968 -1.4127 -3.3252 12 6 7.1464 -2.0221 -4.1626 13 6 7.5697 -2.6994 -5.3282 14 1 8.6205 -2.7481 -5.5731 15 6 6.6268 -3.3077 -6.1659 16 7 5.3547 -3.2483 -5.8698 17 14 7.1863 -4.2038 -7.7065 18 1 8.0997 -5.3125 -7.3301 19 1 6.0038 -4.7561 -8.4149 20 1 7.9002 -3.2555 -8.5989 21 7 5.8447 -1.9682 -3.8612 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.6962 -0.2351 2.0386 26 1 1.7502 -1.6650 1.1909 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 3.8531 0.4369 -1.3574 30 1 3.9994 -1.0728 -0.4261 31 1 3.4256 -1.7343 -3.1116 32 1 5.9470 -0.2055 -1.0316 33 1 8.3770 -0.2760 -1.5265 34 1 9.1484 -1.4593 -3.5668 35 1 4.7015 -3.6693 -6.4503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170891267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:03 Heat of formation + Delta-G solvation = 3.598708 kcal Electronic energy + Delta-G solvation = -16020.032022 eV Core-core repulsion = 13437.308434 eV Total energy + Delta-G solvation = -2582.723587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12473 -38.26866 -36.26152 -35.02754 -32.38408 -31.62015 -29.95078 -28.83496 -27.22797 -24.36158 -23.30317 -22.02482 -21.46772 -19.23105 -18.04170 -17.21048 -16.64183 -16.44068 -16.00174 -15.78102 -15.10329 -15.04119 -14.64887 -14.12573 -13.99322 -13.78176 -13.65255 -12.91602 -12.79379 -12.70689 -12.61385 -12.33861 -12.14169 -12.06558 -11.80600 -11.68231 -11.23561 -10.62475 -9.82225 -9.53624 -9.43181 -8.26114 -8.21342 -6.46901 1.08465 1.35805 1.42183 1.54480 1.60950 2.26466 2.69972 2.94199 3.68165 3.91301 4.06433 4.09545 4.27863 4.39847 4.50594 4.54205 4.69791 4.78712 4.93460 4.95763 5.01257 5.01942 5.10711 5.19801 5.23869 5.34051 5.41391 5.73785 5.98362 6.09511 6.24144 6.31627 6.58638 6.67360 6.85657 6.98237 7.25050 8.36084 8.53068 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.005401 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.956553 B = 5183.080354 C = 5924.254139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.095 3.905 3 H 0.080 0.920 4 N -0.853 5.853 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.736 5.736 8 C 0.392 3.608 9 C -0.368 4.368 10 C -0.030 4.030 11 C -0.345 4.345 12 C 0.258 3.742 13 C -0.474 4.474 14 H 0.087 0.913 15 C 0.026 3.974 16 N -0.754 5.754 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.259 1.259 21 N -0.566 5.566 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.350 0.650 26 H 0.343 0.657 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.391 0.609 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 3.601 8.095 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.017 4.017 3 H 0.099 0.901 4 N -0.384 5.384 5 C -0.152 4.152 6 C 0.026 3.974 7 N -0.371 5.371 8 C 0.152 3.848 9 C -0.394 4.394 10 C -0.054 4.054 11 C -0.368 4.368 12 C 0.131 3.869 13 C -0.506 4.506 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.376 5.376 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.192 1.192 20 H -0.184 1.184 21 N -0.289 5.289 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.164 0.836 26 H 0.156 0.844 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.225 0.775 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.632 3.454 7.424 12.642 hybrid contribution -0.336 -0.249 -0.078 0.425 sum -9.968 3.205 7.346 12.791 Atomic orbital electron populations 1.22555 0.96112 1.02329 1.02893 1.21280 0.92959 0.98059 0.89368 0.90147 1.58857 1.67917 1.07171 1.04432 1.21752 0.93318 1.01469 0.98626 1.21127 0.94605 0.95353 0.86283 1.44420 1.02801 1.61908 1.27987 1.19024 0.86076 0.89640 0.90109 1.20956 0.93850 1.18755 1.05831 1.21004 0.95071 0.94441 0.94921 1.21694 0.98971 1.14321 1.01788 1.18699 0.86836 0.89078 0.92320 1.19926 0.95251 1.30030 1.05350 0.89492 1.26981 0.94422 0.95979 1.02193 1.70251 1.02564 1.30283 1.34494 0.85201 0.78788 0.78687 0.76568 1.18392 1.19234 1.18368 1.68203 1.16944 1.25429 1.18321 0.92510 0.91469 0.91863 0.83639 0.84366 0.91556 0.90838 0.93911 0.92602 0.77495 0.86764 0.85321 0.87864 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.10 1.75 3.37 44.92 0.15 1.90 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 N -0.85 -15.18 8.71 -168.68 -1.47 -16.65 16 5 C -0.11 -2.69 4.94 30.59 0.15 -2.54 16 6 C 0.15 4.87 4.77 86.38 0.41 5.28 16 7 N -0.74 -31.06 5.72 -344.99 -1.97 -33.04 16 8 C 0.39 20.33 7.65 133.42 1.02 21.35 16 9 C -0.37 -17.74 9.34 22.73 0.21 -17.52 16 10 C -0.03 -1.44 10.15 22.39 0.23 -1.22 16 11 C -0.34 -18.39 9.83 22.87 0.22 -18.16 16 12 C 0.26 15.30 6.55 40.18 0.26 15.57 16 13 C -0.47 -27.12 9.14 23.46 0.21 -26.90 16 14 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 15 C 0.03 1.37 5.50 85.29 0.47 1.84 16 16 N -0.75 -41.90 11.46 21.84 0.25 -41.65 16 17 Si 0.99 39.43 29.56 68.60 2.03 41.46 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 21 N -0.57 -33.31 7.89 -186.59 -1.47 -34.79 16 22 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.35 4.77 9.04 -89.70 -0.81 3.96 16 26 H 0.34 5.74 8.98 -89.69 -0.81 4.94 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.41 7.92 -2.39 -0.02 1.39 16 30 H 0.06 1.91 7.53 -2.39 -0.02 1.89 16 31 H 0.39 16.50 8.59 -92.71 -0.80 15.70 16 32 H 0.11 4.87 6.68 -2.91 -0.02 4.85 16 33 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 34 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 35 H 0.28 13.85 8.29 -92.71 -0.77 13.08 16 Total: -1.00 -67.26 295.21 0.09 -67.18 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -1.30 Total: 39.77 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.03 Total: -22.28 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -4.66 Total: -126.12 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -67.26 0.09 -67.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.774 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds