Wall clock time and date at job start Sun Mar 29 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47127 * 2 1 4 4 N 1.46897 * 109.47290 * 120.00400 * 2 1 3 5 5 C 1.53003 * 109.47247 * 240.00017 * 2 1 3 6 6 C 1.53001 * 109.47206 * 174.99872 * 5 2 1 7 7 N 1.46507 * 109.46940 * 179.97438 * 6 5 2 8 8 C 1.32211 * 119.99668 * 119.23761 * 7 6 5 9 9 C 1.46912 * 120.83577 * 5.96586 * 8 7 6 10 10 C 1.34375 * 119.37149 * 180.02562 * 9 8 7 11 11 N 1.36428 * 121.21809 * 359.97438 * 10 9 8 12 12 H 0.96997 * 119.09126 * 179.97438 * 11 10 9 13 13 C 1.37771 * 121.82013 * 0.02888 * 11 10 9 14 14 C 1.40179 * 119.74069 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00052 * 202.60146 * 14 13 11 16 16 C 1.40358 * 120.00079 * 22.60973 * 14 13 11 17 17 N 1.30591 * 119.99853 * 17.07200 * 16 14 13 18 18 Si 1.86791 * 119.99871 * 197.07032 * 16 14 13 19 19 H 1.48501 * 109.47159 * 90.00126 * 18 16 14 20 20 H 1.48505 * 109.47366 * 209.99690 * 18 16 14 21 21 H 1.48502 * 109.47430 * 330.00033 * 18 16 14 22 22 C 1.39066 * 120.51111 * 359.66377 * 13 11 10 23 23 H 1.08998 * 109.46720 * 59.99699 * 1 2 3 24 24 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46850 * 300.00121 * 1 2 3 26 26 H 1.00907 * 110.99730 * 299.99989 * 4 2 1 27 27 H 1.00899 * 111.00465 * 63.94601 * 4 2 1 28 28 H 1.09007 * 109.46730 * 55.00132 * 5 2 1 29 29 H 1.08999 * 109.47165 * 295.00698 * 5 2 1 30 30 H 1.08993 * 109.47183 * 300.00057 * 6 5 2 31 31 H 1.08992 * 109.46689 * 60.00365 * 6 5 2 32 32 H 1.08007 * 120.31656 * 0.02723 * 9 8 7 33 33 H 1.07997 * 119.38876 * 180.02562 * 10 9 8 34 34 H 0.96992 * 119.99568 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.62630 * 180.32524 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0400 -0.7213 -1.2493 6 6 3.5649 -0.6133 -1.3137 7 7 4.0532 -1.3044 -2.5096 8 6 4.7167 -0.6339 -3.4360 9 6 5.0879 0.7722 -3.2271 10 6 5.7618 1.4257 -4.1886 11 7 6.1078 0.8076 -5.3545 12 1 6.5939 1.3088 -6.0278 13 6 5.7851 -0.5087 -5.6024 14 6 6.1620 -1.1004 -6.8160 15 1 5.6307 -1.9662 -7.1826 16 6 7.2301 -0.5677 -7.5546 17 7 8.0774 0.2455 -6.9836 18 14 7.4396 -1.0222 -9.3542 19 1 6.6970 -0.0528 -10.1993 20 1 8.8810 -0.9859 -9.7095 21 1 6.9072 -2.3892 -9.5848 22 6 5.0940 -1.2566 -4.6553 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6961 -0.2350 2.0385 27 1 1.7502 -1.6648 1.1909 28 1 1.6054 -0.2616 -2.1370 29 1 1.7516 -1.7715 -1.2057 30 1 3.8532 0.4369 -1.3574 31 1 3.9994 -1.0728 -0.4261 32 1 4.8217 1.2758 -2.3094 33 1 6.0351 2.4592 -4.0351 34 1 8.8157 0.6133 -7.4939 35 1 4.8446 -2.2901 -4.8456 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170891408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:09 Heat of formation + Delta-G solvation = 21.895032 kcal Electronic energy + Delta-G solvation = -15885.025799 eV Core-core repulsion = 13303.095600 eV Total energy + Delta-G solvation = -2581.930199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.49689 -36.85529 -34.62543 -33.42336 -30.67527 -30.15980 -28.68577 -27.27005 -25.88878 -22.71172 -21.45148 -20.29165 -19.72134 -17.92607 -16.56551 -16.09963 -15.40080 -14.81768 -14.78891 -14.09211 -13.62144 -13.33994 -13.12672 -12.82131 -12.69515 -12.52208 -11.96945 -11.61236 -11.53091 -11.18834 -11.06227 -10.92917 -10.66360 -10.46528 -10.26224 -9.96919 -9.66265 -9.25442 -8.52054 -8.18175 -7.40275 -7.23891 -5.88369 -4.71157 2.63026 2.82186 2.90574 2.95485 3.21345 3.67838 4.33326 4.68769 4.72225 5.04019 5.25847 5.37611 5.47788 5.65311 5.75822 5.88944 5.99959 6.15798 6.27421 6.37405 6.62910 6.64169 6.76064 6.85160 6.89121 6.99688 7.15364 7.32465 7.47467 7.58233 7.74574 7.82617 8.04580 8.33185 8.36560 8.87145 8.99934 9.75374 9.86252 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.057529 B = 0.004483 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.591131 B = 6244.694208 C = 6431.031188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.075 0.925 4 N -0.840 5.840 5 C -0.099 4.099 6 C 0.068 3.932 7 N -0.673 5.673 8 C 0.280 3.720 9 C -0.301 4.301 10 C 0.124 3.876 11 N -0.603 5.603 12 H 0.413 0.587 13 C 0.330 3.670 14 C -0.468 4.468 15 H 0.103 0.897 16 C 0.077 3.923 17 N -0.815 5.815 18 Si 0.924 3.076 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.257 1.257 22 C -0.359 4.359 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.332 0.668 27 H 0.338 0.662 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.291 0.709 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 4.394 3.457 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.027 4.027 3 H 0.093 0.907 4 N -0.368 5.368 5 C -0.138 4.138 6 C -0.063 4.063 7 N -0.398 5.398 8 C 0.116 3.884 9 C -0.331 4.331 10 C -0.006 4.006 11 N -0.214 5.214 12 H 0.253 0.747 13 C 0.221 3.779 14 C -0.501 4.501 15 H 0.120 0.880 16 C -0.141 4.141 17 N -0.443 5.443 18 Si 0.748 3.252 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.180 1.180 22 C -0.388 4.388 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.799 3.845 3.491 7.071 hybrid contribution -0.443 0.939 -0.512 1.157 sum -5.242 4.784 2.979 7.697 Atomic orbital electron populations 1.22641 0.98450 1.01679 1.01665 1.21528 0.91249 0.98553 0.91345 0.90711 1.58872 1.67510 1.06614 1.03829 1.21589 0.97936 0.99641 0.94602 1.21642 0.92810 0.96025 0.95788 1.73287 1.28526 1.32317 1.05685 1.20232 0.88574 0.87348 0.92257 1.22319 1.11787 0.98549 1.00458 1.21227 0.95663 0.96455 0.87259 1.42051 1.51937 1.11199 1.16257 0.74723 1.17616 0.87256 0.80804 0.92231 1.19518 1.13893 1.13723 1.02964 0.87956 1.26191 0.93524 0.92950 1.01482 1.69345 1.11066 1.25873 1.38015 0.86020 0.78270 0.80675 0.80271 1.18992 1.20049 1.18021 1.20209 1.24001 0.99948 0.94687 0.92196 0.92859 0.93281 0.85613 0.84909 0.92716 0.92440 0.96158 0.92870 0.86528 0.85314 0.89742 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.48 37.16 0.35 -1.78 16 2 C 0.09 1.19 3.37 -67.71 -0.23 0.96 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 N -0.84 -10.81 8.71 -4.67 -0.04 -10.85 16 5 C -0.10 -1.78 5.15 -26.73 -0.14 -1.91 16 6 C 0.07 1.47 6.15 -4.04 -0.02 1.44 16 7 N -0.67 -17.16 10.62 -57.24 -0.61 -17.77 16 8 C 0.28 7.19 6.80 -82.74 -0.56 6.63 16 9 C -0.30 -6.74 9.39 -37.44 -0.35 -7.09 16 10 C 0.12 2.52 11.15 -16.87 -0.19 2.33 16 11 N -0.60 -13.54 4.89 -10.83 -0.05 -13.59 16 12 H 0.41 8.81 6.33 -40.82 -0.26 8.55 16 13 C 0.33 8.27 6.37 -84.16 -0.54 7.73 16 14 C -0.47 -11.32 9.03 -38.06 -0.34 -11.67 16 15 H 0.10 2.42 7.91 -52.49 -0.42 2.00 16 16 C 0.08 1.69 5.18 -17.28 -0.09 1.60 16 17 N -0.81 -18.11 11.12 55.57 0.62 -17.50 16 18 Si 0.92 16.63 29.59 -169.99 -5.03 11.60 16 19 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 20 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 22 C -0.36 -9.50 9.83 -37.83 -0.37 -9.87 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.33 3.45 9.04 -39.29 -0.36 3.10 16 27 H 0.34 4.13 8.98 -39.29 -0.35 3.77 16 28 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.43 5.22 -51.93 -0.27 0.16 16 31 H 0.05 1.17 7.75 -51.93 -0.40 0.77 16 32 H 0.12 2.41 5.90 -52.48 -0.31 2.10 16 33 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.29 5.83 8.29 -40.82 -0.34 5.49 16 35 H 0.11 3.01 8.06 -52.48 -0.42 2.58 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -27.77 292.52 -8.07 -35.83 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -4.88 Total: 19.49 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.48 Total: -11.63 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.08 Total: -59.71 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.77 -8.07 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.729 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds