Wall clock time and date at job start Sun Mar 29 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47127 * 2 1 4 4 N 1.46897 * 109.47290 * 120.00400 * 2 1 3 5 5 C 1.53003 * 109.47247 * 240.00017 * 2 1 3 6 6 C 1.53001 * 109.47206 * 174.99872 * 5 2 1 7 7 N 1.46507 * 109.46940 * 179.97438 * 6 5 2 8 8 C 1.32211 * 119.99668 * 119.23761 * 7 6 5 9 9 C 1.46912 * 120.83577 * 5.96586 * 8 7 6 10 10 C 1.34375 * 119.37149 * 180.02562 * 9 8 7 11 11 N 1.36428 * 121.21809 * 359.97438 * 10 9 8 12 12 H 0.96997 * 119.09126 * 179.97438 * 11 10 9 13 13 C 1.37771 * 121.82013 * 0.02888 * 11 10 9 14 14 C 1.40179 * 119.74069 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00052 * 202.60146 * 14 13 11 16 16 C 1.40358 * 120.00079 * 22.60973 * 14 13 11 17 17 N 1.30591 * 119.99853 * 17.07200 * 16 14 13 18 18 Si 1.86791 * 119.99871 * 197.07032 * 16 14 13 19 19 H 1.48501 * 109.47159 * 90.00126 * 18 16 14 20 20 H 1.48505 * 109.47366 * 209.99690 * 18 16 14 21 21 H 1.48502 * 109.47430 * 330.00033 * 18 16 14 22 22 C 1.39066 * 120.51111 * 359.66377 * 13 11 10 23 23 H 1.08998 * 109.46720 * 59.99699 * 1 2 3 24 24 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46850 * 300.00121 * 1 2 3 26 26 H 1.00907 * 110.99730 * 299.99989 * 4 2 1 27 27 H 1.00899 * 111.00465 * 63.94601 * 4 2 1 28 28 H 1.09007 * 109.46730 * 55.00132 * 5 2 1 29 29 H 1.08999 * 109.47165 * 295.00698 * 5 2 1 30 30 H 1.08993 * 109.47183 * 300.00057 * 6 5 2 31 31 H 1.08992 * 109.46689 * 60.00365 * 6 5 2 32 32 H 1.08007 * 120.31656 * 0.02723 * 9 8 7 33 33 H 1.07997 * 119.38876 * 180.02562 * 10 9 8 34 34 H 0.96992 * 119.99568 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.62630 * 180.32524 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0400 -0.7213 -1.2493 6 6 3.5649 -0.6133 -1.3137 7 7 4.0532 -1.3044 -2.5096 8 6 4.7167 -0.6339 -3.4360 9 6 5.0879 0.7722 -3.2271 10 6 5.7618 1.4257 -4.1886 11 7 6.1078 0.8076 -5.3545 12 1 6.5939 1.3088 -6.0278 13 6 5.7851 -0.5087 -5.6024 14 6 6.1620 -1.1004 -6.8160 15 1 5.6307 -1.9662 -7.1826 16 6 7.2301 -0.5677 -7.5546 17 7 8.0774 0.2455 -6.9836 18 14 7.4396 -1.0222 -9.3542 19 1 6.6970 -0.0528 -10.1993 20 1 8.8810 -0.9859 -9.7095 21 1 6.9072 -2.3892 -9.5848 22 6 5.0940 -1.2566 -4.6553 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6961 -0.2350 2.0385 27 1 1.7502 -1.6648 1.1909 28 1 1.6054 -0.2616 -2.1370 29 1 1.7516 -1.7715 -1.2057 30 1 3.8532 0.4369 -1.3574 31 1 3.9994 -1.0728 -0.4261 32 1 4.8217 1.2758 -2.3094 33 1 6.0351 2.4592 -4.0351 34 1 8.8157 0.6133 -7.4939 35 1 4.8446 -2.2901 -4.8456 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170891408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:09 Heat of formation + Delta-G solvation = 1.947086 kcal Electronic energy + Delta-G solvation = -15885.890807 eV Core-core repulsion = 13303.095600 eV Total energy + Delta-G solvation = -2582.795207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29042 -38.14634 -36.33433 -35.16232 -32.46600 -31.76450 -29.86038 -28.86223 -27.63776 -24.30194 -23.19635 -21.71188 -21.31825 -19.73017 -18.37429 -17.27705 -17.06531 -16.54500 -16.31833 -15.54480 -15.15613 -14.71427 -14.62608 -14.29793 -14.22638 -13.76815 -13.48682 -13.18683 -12.90201 -12.79777 -12.64887 -12.47165 -12.36656 -11.94117 -11.71783 -11.60816 -11.31964 -11.05133 -9.98984 -9.55503 -9.24224 -8.96960 -7.72126 -6.63246 0.95882 1.10098 1.42725 1.56332 1.62693 2.17093 2.56524 2.93738 3.50012 3.69754 3.85773 4.12693 4.19215 4.31691 4.38358 4.62377 4.67588 4.81705 4.88459 4.94029 5.02355 5.06013 5.07649 5.16920 5.23970 5.40796 5.47976 5.66646 5.84896 6.00615 6.11516 6.30013 6.49411 6.52031 6.68461 7.01815 7.21616 8.01400 8.04937 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.057529 B = 0.004483 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.591131 B = 6244.694208 C = 6431.031188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.849 5.849 5 C -0.090 4.090 6 C 0.072 3.928 7 N -0.712 5.712 8 C 0.260 3.740 9 C -0.322 4.322 10 C 0.139 3.861 11 N -0.603 5.603 12 H 0.418 0.582 13 C 0.321 3.679 14 C -0.496 4.496 15 H 0.095 0.905 16 C 0.050 3.950 17 N -0.823 5.823 18 Si 0.997 3.003 19 H -0.253 1.253 20 H -0.264 1.264 21 H -0.264 1.264 22 C -0.406 4.406 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.349 0.651 27 H 0.342 0.658 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.022 0.978 31 H 0.044 0.956 32 H 0.134 0.866 33 H 0.185 0.815 34 H 0.307 0.693 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 6.257 2.864 8.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.018 4.018 3 H 0.092 0.908 4 N -0.380 5.380 5 C -0.129 4.129 6 C -0.059 4.059 7 N -0.438 5.438 8 C 0.097 3.903 9 C -0.351 4.351 10 C 0.010 3.990 11 N -0.214 5.214 12 H 0.260 0.740 13 C 0.212 3.788 14 C -0.528 4.528 15 H 0.113 0.887 16 C -0.168 4.168 17 N -0.450 5.450 18 Si 0.817 3.183 19 H -0.177 1.177 20 H -0.188 1.188 21 H -0.188 1.188 22 C -0.435 4.435 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.151 0.849 33 H 0.202 0.798 34 H 0.118 0.882 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.340 5.732 2.937 7.766 hybrid contribution -0.472 0.354 -0.365 0.694 sum -4.812 6.086 2.572 8.174 Atomic orbital electron populations 1.22541 0.96193 1.02171 1.02734 1.21341 0.92912 0.97733 0.89823 0.90769 1.58796 1.67968 1.07030 1.04186 1.21479 0.95473 0.99509 0.96423 1.21662 0.94874 0.95532 0.93840 1.73190 1.29170 1.34288 1.07129 1.20439 0.88654 0.89253 0.91981 1.22373 1.13412 0.97245 1.02095 1.21919 0.93306 0.98325 0.85488 1.42074 1.51935 1.10247 1.17183 0.74048 1.17726 0.86920 0.82033 0.92140 1.19736 1.15161 1.14352 1.03521 0.88713 1.26945 0.92244 0.92369 1.05251 1.69318 1.10965 1.24949 1.39750 0.84941 0.78705 0.80084 0.74576 1.17739 1.18816 1.18770 1.20155 1.27352 0.99410 0.96603 0.92339 0.92687 0.90980 0.83708 0.84496 0.93985 0.93476 0.95941 0.93764 0.84888 0.79807 0.88160 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 9.48 71.98 0.68 -3.07 16 2 C 0.09 2.53 3.37 44.92 0.15 2.68 16 3 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 4 N -0.85 -20.82 8.71 -168.68 -1.47 -22.29 16 5 C -0.09 -3.29 5.15 30.60 0.16 -3.13 16 6 C 0.07 3.14 6.15 86.38 0.53 3.67 16 7 N -0.71 -37.99 10.62 -335.01 -3.56 -41.54 16 8 C 0.26 13.92 6.80 42.30 0.29 14.20 16 9 C -0.32 -14.36 9.39 23.66 0.22 -14.14 16 10 C 0.14 5.42 11.15 83.09 0.93 6.35 16 11 N -0.60 -26.60 4.89 -188.19 -0.92 -27.52 16 12 H 0.42 17.17 6.33 -92.71 -0.59 16.58 16 13 C 0.32 16.52 6.37 38.88 0.25 16.77 16 14 C -0.50 -24.39 9.03 23.26 0.21 -24.18 16 15 H 0.09 4.66 7.91 -2.91 -0.02 4.64 16 16 C 0.05 2.13 5.18 85.39 0.44 2.58 16 17 N -0.82 -34.99 11.12 21.90 0.24 -34.75 16 18 Si 1.00 32.55 29.59 68.60 2.03 34.58 16 19 H -0.25 -7.82 7.11 99.48 0.71 -7.12 16 20 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 C -0.41 -22.72 9.83 23.41 0.23 -22.49 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.35 6.55 9.04 -89.69 -0.81 5.74 16 27 H 0.34 8.03 8.98 -89.69 -0.81 7.23 16 28 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.02 0.96 5.22 -2.39 -0.01 0.95 16 31 H 0.04 1.99 7.75 -2.39 -0.02 1.97 16 32 H 0.13 5.39 5.90 -2.91 -0.02 5.37 16 33 H 0.19 5.08 8.06 -2.91 -0.02 5.05 16 34 H 0.31 11.40 8.29 -92.71 -0.77 10.63 16 35 H 0.08 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -62.30 292.52 -0.67 -62.97 By element: Atomic # 1 Polarization: 50.39 SS G_CDS: -1.09 Total: 49.30 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 4.09 Total: -20.75 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -5.70 Total: -126.10 kcal Atomic # 14 Polarization: 32.55 SS G_CDS: 2.03 Total: 34.58 kcal Total: -62.30 -0.67 -62.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.919 kcal (2) G-P(sol) polarization free energy of solvation -62.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds