Wall clock time and date at job start Sun Mar 29 2020 22:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46991 * 2 1 4 4 N 1.46898 * 109.47521 * 239.99821 * 2 1 3 5 5 C 1.53003 * 109.47042 * 119.99512 * 2 1 3 6 6 N 1.46495 * 109.47254 * 180.02562 * 5 2 1 7 7 C 1.38095 * 120.00251 * 179.72949 * 6 5 2 8 8 N 1.32274 * 119.90074 * 0.27097 * 7 6 5 9 9 C 1.31970 * 121.86496 * 179.97438 * 8 7 6 10 10 C 1.38682 * 121.44392 * 0.02562 * 9 8 7 11 11 C 1.38007 * 119.63118 * 359.97438 * 10 9 8 12 12 C 1.41005 * 118.27819 * 359.74627 * 11 10 9 13 13 C 1.41020 * 120.70263 * 180.24703 * 12 11 10 14 14 H 1.08002 * 119.99503 * 154.91866 * 13 12 11 15 15 C 1.39947 * 120.00484 * 334.91454 * 13 12 11 16 16 N 1.30872 * 119.99649 * 343.59713 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 163.59260 * 15 13 12 18 18 H 1.48498 * 109.47071 * 60.00383 * 17 15 13 19 19 H 1.48505 * 109.46982 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47330 * 300.00017 * 17 15 13 21 21 H 1.08993 * 109.47301 * 300.00029 * 1 2 3 22 22 H 1.09002 * 109.46833 * 60.00641 * 1 2 3 23 23 H 1.08999 * 109.46877 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47056 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47216 * 300.00008 * 3 2 1 26 26 H 1.09007 * 109.47207 * 59.99818 * 3 2 1 27 27 H 1.00903 * 111.00108 * 176.04474 * 4 2 1 28 28 H 1.00895 * 111.00108 * 300.00130 * 4 2 1 29 29 H 1.08999 * 109.46765 * 60.00567 * 5 2 1 30 30 H 1.09000 * 109.47582 * 300.00686 * 5 2 1 31 31 H 0.97000 * 120.00288 * 0.02562 * 6 5 2 32 32 H 1.08000 * 119.27999 * 179.97438 * 9 8 7 33 33 H 1.08008 * 120.18484 * 180.02562 * 10 9 8 34 34 H 1.08003 * 120.85878 * 180.02562 * 11 10 9 35 35 H 0.96998 * 119.99832 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 7 3.5049 -0.7207 1.2497 7 6 4.1954 -1.3135 2.2883 8 7 3.5321 -1.8861 3.2792 9 6 4.1524 -2.4642 4.2904 10 6 5.5367 -2.4998 4.3650 11 6 6.2891 -1.9207 3.3635 12 6 5.6124 -1.3121 2.2865 13 6 6.3306 -0.7097 1.2330 14 1 5.8782 -0.6134 0.2570 15 6 7.6293 -0.2366 1.4521 16 7 8.0617 -0.0538 2.6737 17 14 8.7456 0.1339 0.0009 18 1 8.1217 1.1793 -0.8494 19 1 10.0589 0.6177 0.4975 20 1 8.9440 -1.1014 -0.7990 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.0263 -0.6500 -1.2558 28 1 1.6963 -1.6479 -1.2227 29 1 1.6767 -1.7488 1.2493 30 1 1.6766 -0.2074 2.1393 31 1 3.9900 -0.3001 0.5225 32 1 3.5692 -2.9188 5.0776 33 1 6.0233 -2.9788 5.2019 34 1 7.3684 -1.9373 3.4013 35 1 8.9617 0.2745 2.8256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171188302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:58 Heat of formation + Delta-G solvation = 20.110705 kcal Electronic energy + Delta-G solvation = -16711.493589 eV Core-core repulsion = 14129.486016 eV Total energy + Delta-G solvation = -2582.007573 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.74517 -37.50402 -33.97845 -33.44563 -30.41691 -29.50420 -28.82766 -27.16703 -25.61528 -24.80044 -21.48940 -20.62409 -19.09429 -17.26921 -16.73883 -15.71678 -15.30147 -15.09338 -14.48973 -14.07615 -13.74349 -13.36988 -12.88839 -12.83087 -12.18170 -12.09869 -11.91466 -11.71112 -11.58266 -11.46826 -11.35734 -10.99004 -10.89804 -10.69754 -10.58066 -9.81361 -9.32229 -8.99267 -8.51588 -8.10847 -7.91475 -6.82931 -6.53172 -4.26646 2.73344 3.04001 3.05561 3.09922 3.22785 3.89852 4.31909 4.66662 4.73903 5.08484 5.17210 5.32507 5.70540 5.80504 5.91042 6.00909 6.05118 6.09762 6.20759 6.31698 6.35123 6.43258 6.45554 6.75263 6.86047 7.08813 7.15506 7.33613 7.60614 7.63774 7.78840 7.97294 8.24805 8.47762 8.62825 8.76199 8.97238 9.76557 10.18278 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.009102 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.498147 B = 3075.480548 C = 4219.134289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.098 3.902 3 C -0.138 4.138 4 N -0.837 5.837 5 C 0.119 3.881 6 N -0.729 5.729 7 C 0.302 3.698 8 N -0.532 5.532 9 C 0.001 3.999 10 C -0.191 4.191 11 C -0.125 4.125 12 C 0.032 3.968 13 C -0.458 4.458 14 H 0.073 0.927 15 C 0.076 3.924 16 N -0.798 5.798 17 Si 0.907 3.093 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.342 0.658 28 H 0.339 0.661 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.399 0.601 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 0.803 -4.562 7.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.005 3.995 3 C -0.196 4.196 4 N -0.367 5.367 5 C -0.009 4.009 6 N -0.370 5.370 7 C 0.065 3.935 8 N -0.250 5.250 9 C -0.152 4.152 10 C -0.214 4.214 11 C -0.152 4.152 12 C 0.025 3.975 13 C -0.489 4.489 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.424 5.424 17 Si 0.731 3.269 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.237 0.763 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.693 1.396 -4.751 9.148 hybrid contribution 2.272 -0.310 0.052 2.294 sum -5.420 1.085 -4.698 7.255 Atomic orbital electron populations 1.21717 0.93587 1.01857 1.01925 1.21094 0.95327 0.94667 0.88402 1.21792 1.01632 0.94561 1.01619 1.59082 1.16578 1.20931 1.40149 1.21690 0.82643 0.99163 0.97370 1.43700 1.03480 1.64869 1.24999 1.18472 0.88287 0.97396 0.89351 1.66563 1.41129 1.14126 1.03134 1.21366 0.91556 1.05346 0.96963 1.21416 0.95012 1.04761 1.00186 1.21344 0.99706 0.98987 0.95149 1.17922 0.89392 0.94817 0.95366 1.19069 0.98368 1.34682 0.96794 0.90940 1.25807 0.98402 0.93360 0.96554 1.69804 1.18044 1.33198 1.21361 0.86390 0.79103 0.79618 0.81753 1.19038 1.20384 1.18936 0.92178 0.91914 0.92793 0.92199 0.92259 0.92211 0.84480 0.84922 0.93517 0.93085 0.76322 0.86547 0.88753 0.85758 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.77 37.16 0.33 -1.24 16 2 C 0.10 1.36 0.96 -131.60 -0.13 1.23 16 3 C -0.14 -1.92 8.56 37.16 0.32 -1.60 16 4 N -0.84 -11.19 8.86 0.74 0.01 -11.18 16 5 C 0.12 2.06 4.75 -4.04 -0.02 2.04 16 6 N -0.73 -14.86 5.10 -59.97 -0.31 -15.16 16 7 C 0.30 7.43 7.52 -155.02 -1.17 6.27 16 8 N -0.53 -13.07 9.54 -11.86 -0.11 -13.18 16 9 C 0.00 0.03 11.17 -17.33 -0.19 -0.16 16 10 C -0.19 -4.56 10.08 -39.50 -0.40 -4.95 16 11 C -0.13 -3.27 8.79 -38.62 -0.34 -3.61 16 12 C 0.03 0.84 5.59 -106.47 -0.60 0.24 16 13 C -0.46 -11.56 8.51 -37.89 -0.32 -11.88 16 14 H 0.07 1.71 6.70 -52.49 -0.35 1.35 16 15 C 0.08 1.85 5.19 -17.32 -0.09 1.76 16 16 N -0.80 -20.34 10.95 55.55 0.61 -19.73 16 17 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.91 6.86 -51.93 -0.36 0.56 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.34 4.81 7.74 -39.29 -0.30 4.50 16 28 H 0.34 4.29 9.00 -39.29 -0.35 3.93 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.40 7.83 4.51 -40.82 -0.18 7.64 16 32 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.09 1.98 8.06 -52.48 -0.42 1.56 16 34 H 0.12 3.31 6.26 -52.48 -0.33 2.98 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -27.47 287.72 -7.92 -35.39 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -4.82 Total: 18.23 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.61 Total: -11.90 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.20 Total: -59.26 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.47 -7.92 -35.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171188302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.503 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds