Wall clock time and date at job start Sun Mar 29 2020 22:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46991 * 2 1 4 4 N 1.46898 * 109.47521 * 239.99821 * 2 1 3 5 5 C 1.53003 * 109.47042 * 119.99512 * 2 1 3 6 6 N 1.46495 * 109.47254 * 180.02562 * 5 2 1 7 7 C 1.38095 * 120.00251 * 179.72949 * 6 5 2 8 8 N 1.32274 * 119.90074 * 0.27097 * 7 6 5 9 9 C 1.31970 * 121.86496 * 179.97438 * 8 7 6 10 10 C 1.38682 * 121.44392 * 0.02562 * 9 8 7 11 11 C 1.38007 * 119.63118 * 359.97438 * 10 9 8 12 12 C 1.41005 * 118.27819 * 359.74627 * 11 10 9 13 13 C 1.41020 * 120.70263 * 180.24703 * 12 11 10 14 14 H 1.08002 * 119.99503 * 154.91866 * 13 12 11 15 15 C 1.39947 * 120.00484 * 334.91454 * 13 12 11 16 16 N 1.30872 * 119.99649 * 343.59713 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 163.59260 * 15 13 12 18 18 H 1.48498 * 109.47071 * 60.00383 * 17 15 13 19 19 H 1.48505 * 109.46982 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47330 * 300.00017 * 17 15 13 21 21 H 1.08993 * 109.47301 * 300.00029 * 1 2 3 22 22 H 1.09002 * 109.46833 * 60.00641 * 1 2 3 23 23 H 1.08999 * 109.46877 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47056 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47216 * 300.00008 * 3 2 1 26 26 H 1.09007 * 109.47207 * 59.99818 * 3 2 1 27 27 H 1.00903 * 111.00108 * 176.04474 * 4 2 1 28 28 H 1.00895 * 111.00108 * 300.00130 * 4 2 1 29 29 H 1.08999 * 109.46765 * 60.00567 * 5 2 1 30 30 H 1.09000 * 109.47582 * 300.00686 * 5 2 1 31 31 H 0.97000 * 120.00288 * 0.02562 * 6 5 2 32 32 H 1.08000 * 119.27999 * 179.97438 * 9 8 7 33 33 H 1.08008 * 120.18484 * 180.02562 * 10 9 8 34 34 H 1.08003 * 120.85878 * 180.02562 * 11 10 9 35 35 H 0.96998 * 119.99832 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 7 3.5049 -0.7207 1.2497 7 6 4.1954 -1.3135 2.2883 8 7 3.5321 -1.8861 3.2792 9 6 4.1524 -2.4642 4.2904 10 6 5.5367 -2.4998 4.3650 11 6 6.2891 -1.9207 3.3635 12 6 5.6124 -1.3121 2.2865 13 6 6.3306 -0.7097 1.2330 14 1 5.8782 -0.6134 0.2570 15 6 7.6293 -0.2366 1.4521 16 7 8.0617 -0.0538 2.6737 17 14 8.7456 0.1339 0.0009 18 1 8.1217 1.1793 -0.8494 19 1 10.0589 0.6177 0.4975 20 1 8.9440 -1.1014 -0.7990 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.0263 -0.6500 -1.2558 28 1 1.6963 -1.6479 -1.2227 29 1 1.6767 -1.7488 1.2493 30 1 1.6766 -0.2074 2.1393 31 1 3.9900 -0.3001 0.5225 32 1 3.5692 -2.9188 5.0776 33 1 6.0233 -2.9788 5.2019 34 1 7.3684 -1.9373 3.4013 35 1 8.9617 0.2745 2.8256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171188302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:57 Heat of formation + Delta-G solvation = 2.670742 kcal Electronic energy + Delta-G solvation = -16712.249843 eV Core-core repulsion = 14129.486016 eV Total energy + Delta-G solvation = -2582.763827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47197 -38.88705 -35.84658 -35.04818 -32.32085 -30.77058 -30.39387 -28.23992 -27.41926 -26.36902 -23.34576 -22.43757 -20.30530 -19.16064 -18.40848 -17.29240 -16.78892 -16.48524 -15.89308 -15.74252 -15.39643 -14.87251 -14.51274 -14.31776 -13.80573 -13.75368 -13.25919 -13.13423 -13.00131 -12.87154 -12.67654 -12.65831 -12.23955 -12.12712 -11.82199 -11.65073 -11.14402 -10.73339 -10.02499 -9.83119 -9.66857 -8.66743 -8.33740 -6.17762 0.91329 1.19975 1.40300 1.50156 1.54641 2.21132 2.72875 2.83159 3.58260 3.79565 3.90387 4.01138 4.15808 4.35782 4.61422 4.70579 4.75688 4.83967 4.90632 4.94887 5.03556 5.04544 5.06177 5.20402 5.29401 5.31833 5.36052 5.76775 5.89354 6.07697 6.20635 6.37624 6.51959 6.73490 6.80742 6.88237 7.11479 7.90060 8.36710 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.009102 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.498147 B = 3075.480548 C = 4219.134289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.106 3.894 3 C -0.136 4.136 4 N -0.832 5.832 5 C 0.123 3.877 6 N -0.721 5.721 7 C 0.294 3.706 8 N -0.544 5.544 9 C -0.004 4.004 10 C -0.198 4.198 11 C -0.152 4.152 12 C 0.001 3.999 13 C -0.480 4.480 14 H 0.082 0.918 15 C 0.034 3.966 16 N -0.831 5.831 17 Si 0.980 3.020 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.262 1.262 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.338 0.662 28 H 0.344 0.656 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.402 0.598 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 1.145 -5.719 9.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.013 3.987 3 C -0.194 4.194 4 N -0.361 5.361 5 C -0.004 4.004 6 N -0.361 5.361 7 C 0.055 3.945 8 N -0.263 5.263 9 C -0.157 4.157 10 C -0.220 4.220 11 C -0.178 4.178 12 C -0.006 4.006 13 C -0.511 4.511 14 H 0.100 0.900 15 C -0.180 4.180 16 N -0.458 5.458 17 Si 0.801 3.199 18 H -0.180 1.180 19 H -0.198 1.198 20 H -0.187 1.187 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.157 0.843 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.240 0.760 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.424 1.739 -5.919 10.441 hybrid contribution 2.430 -0.437 0.470 2.513 sum -5.995 1.302 -5.448 8.204 Atomic orbital electron populations 1.21694 0.91533 1.02569 1.02841 1.21079 0.96735 0.94169 0.86702 1.21782 1.00469 0.94701 1.02469 1.59117 1.16264 1.21361 1.39382 1.21826 0.80664 0.99106 0.98811 1.43766 1.04723 1.63752 1.23867 1.18757 0.88349 0.97216 0.90157 1.66675 1.41241 1.14784 1.03576 1.21919 0.91872 1.04589 0.97288 1.21656 0.95342 1.04566 1.00428 1.21384 0.99315 1.00577 0.96537 1.18294 0.90530 0.95689 0.96108 1.19353 0.99397 1.35263 0.97047 0.90028 1.26676 0.99404 0.92702 0.99199 1.69877 1.18672 1.33781 1.23438 0.85277 0.77004 0.79535 0.78097 1.18021 1.19843 1.18666 0.91532 0.90731 0.92241 0.93948 0.90700 0.92080 0.84958 0.84344 0.94206 0.94400 0.76020 0.83464 0.86282 0.87236 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.77 71.98 0.63 -2.08 16 2 C 0.11 2.78 0.96 3.53 0.00 2.78 16 3 C -0.14 -3.58 8.56 71.98 0.62 -2.96 16 4 N -0.83 -20.80 8.86 -151.56 -1.34 -22.14 16 5 C 0.12 4.16 4.75 86.38 0.41 4.57 16 6 N -0.72 -29.28 5.10 -343.66 -1.75 -31.04 16 7 C 0.29 14.54 7.52 134.05 1.01 15.55 16 8 N -0.54 -26.58 9.54 -191.45 -1.83 -28.41 16 9 C 0.00 -0.17 11.17 84.78 0.95 0.77 16 10 C -0.20 -9.39 10.08 22.32 0.22 -9.17 16 11 C -0.15 -8.07 8.79 22.89 0.20 -7.86 16 12 C 0.00 0.05 5.59 -21.06 -0.12 -0.07 16 13 C -0.48 -24.47 8.51 23.37 0.20 -24.27 16 14 H 0.08 3.85 6.70 -2.91 -0.02 3.83 16 15 C 0.03 1.68 5.19 85.25 0.44 2.12 16 16 N -0.83 -43.00 10.95 21.83 0.24 -42.76 16 17 Si 0.98 37.07 29.59 68.60 2.03 39.10 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.04 1.25 6.86 -2.39 -0.02 1.23 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.34 9.07 7.74 -89.69 -0.69 8.38 16 28 H 0.34 8.10 9.00 -89.70 -0.81 7.29 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.40 15.72 4.51 -92.71 -0.42 15.30 16 32 H 0.15 5.76 8.06 -2.91 -0.02 5.74 16 33 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 34 H 0.11 6.04 6.26 -2.91 -0.02 6.02 16 35 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 Total: -1.00 -58.52 287.72 1.11 -57.41 By element: Atomic # 1 Polarization: 49.25 SS G_CDS: -0.80 Total: 48.45 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 4.57 Total: -20.62 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -4.68 Total: -124.35 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -58.52 1.11 -57.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171188302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.085 kcal (2) G-P(sol) polarization free energy of solvation -58.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds