Wall clock time and date at job start Sun Mar 29 2020 22:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 N 1.46901 * 109.46799 * 240.00459 * 2 1 3 5 5 C 1.52999 * 109.47181 * 120.00776 * 2 1 3 6 6 N 1.46496 * 109.46855 * 179.97438 * 5 2 1 7 7 C 1.38823 * 119.99790 * 179.97438 * 6 5 2 8 8 C 1.39803 * 119.58538 * 0.02562 * 7 6 5 9 9 C 1.38590 * 119.48949 * 180.02562 * 8 7 6 10 10 C 1.38384 * 118.68545 * 359.97438 * 9 8 7 11 11 C 1.40552 * 119.14736 * 0.02562 * 10 9 8 12 12 C 1.41323 * 119.78413 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99816 * 7.19465 * 12 11 10 14 14 C 1.40028 * 119.99880 * 187.18977 * 12 11 10 15 15 N 1.30747 * 120.00036 * 7.20797 * 14 12 11 16 16 Si 1.86800 * 119.99586 * 186.92785 * 14 12 11 17 17 H 1.48494 * 109.47153 * 265.29181 * 16 14 12 18 18 H 1.48497 * 109.47286 * 25.29783 * 16 14 12 19 19 H 1.48511 * 109.46585 * 145.29571 * 16 14 12 20 20 N 1.31951 * 119.58769 * 180.29685 * 7 6 5 21 21 H 1.09003 * 109.46767 * 299.99619 * 1 2 3 22 22 H 1.08996 * 109.46999 * 59.99413 * 1 2 3 23 23 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46785 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47668 * 300.00178 * 3 2 1 26 26 H 1.09003 * 109.46993 * 60.00520 * 3 2 1 27 27 H 1.00905 * 111.00242 * 299.99864 * 4 2 1 28 28 H 1.00897 * 111.00118 * 63.95331 * 4 2 1 29 29 H 1.08998 * 109.47497 * 59.99484 * 5 2 1 30 30 H 1.09003 * 109.46947 * 299.99495 * 5 2 1 31 31 H 0.96998 * 120.00236 * 0.02562 * 6 5 2 32 32 H 1.07997 * 120.25046 * 0.04363 * 8 7 6 33 33 H 1.08008 * 120.65600 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.42520 * 180.02562 * 10 9 8 35 35 H 0.96998 * 119.99668 * 179.72260 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0401 -0.7214 1.2491 6 7 3.5050 -0.7219 1.2487 7 6 4.1992 -1.3228 2.2900 8 6 3.4914 -1.9254 3.3343 9 6 4.1864 -2.5242 4.3731 10 6 5.5698 -2.5072 4.3436 11 6 6.2240 -1.8855 3.2660 12 6 7.6363 -1.8598 3.2225 13 1 8.2091 -2.4148 3.9507 14 6 8.2929 -1.1149 2.2352 15 7 7.6078 -0.3325 1.4428 16 14 10.1485 -1.2332 2.0555 17 1 10.7908 -0.1340 2.8199 18 1 10.6145 -2.5409 2.5826 19 1 10.5151 -1.1186 0.6210 20 7 5.5186 -1.3134 2.2845 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6768 1.9563 0.8901 27 1 1.6961 -1.6479 -1.2229 28 1 1.7502 -0.1988 -2.0373 29 1 1.6767 -1.7490 1.2491 30 1 1.6768 -0.2076 2.1392 31 1 3.9900 -0.3017 0.5213 32 1 2.4115 -1.9244 3.3313 33 1 3.6587 -2.9948 5.1896 34 1 6.1395 -2.9658 5.1383 35 1 8.0632 0.1866 0.7615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171196538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:00 Heat of formation + Delta-G solvation = 8.557313 kcal Electronic energy + Delta-G solvation = -16463.186055 eV Core-core repulsion = 13880.677489 eV Total energy + Delta-G solvation = -2582.508566 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20843 -38.85129 -35.85274 -34.66031 -32.25982 -30.91284 -30.19210 -28.25254 -27.27169 -26.51428 -23.34806 -22.22124 -20.42709 -19.21229 -17.99160 -16.96358 -16.54506 -16.43243 -16.22809 -15.67335 -15.07239 -14.80597 -14.62265 -14.30831 -13.70113 -13.52523 -13.49533 -13.01819 -12.86169 -12.72667 -12.68833 -12.58082 -12.22870 -12.14893 -11.74100 -11.68930 -11.22333 -10.60984 -9.81601 -9.55613 -9.38502 -8.29097 -8.15053 -6.44333 1.09106 1.37832 1.42277 1.56100 1.60489 2.26941 2.75895 2.94624 3.59668 3.77988 3.99337 4.10701 4.17657 4.40816 4.65304 4.66448 4.72829 4.81913 4.89541 4.96515 5.02783 5.03332 5.05862 5.15046 5.21126 5.35666 5.42955 5.75197 5.99137 6.10971 6.26772 6.30886 6.63253 6.66932 6.89047 7.03271 7.30033 8.38446 8.54511 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028485 B = 0.006738 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.749266 B = 4154.715437 C = 4934.475400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 C -0.137 4.137 4 N -0.847 5.847 5 C 0.152 3.848 6 N -0.718 5.718 7 C 0.394 3.606 8 C -0.371 4.371 9 C -0.029 4.029 10 C -0.348 4.348 11 C 0.262 3.738 12 C -0.476 4.476 13 H 0.086 0.914 14 C 0.028 3.972 15 N -0.755 5.755 16 Si 0.986 3.014 17 H -0.262 1.262 18 H -0.257 1.257 19 H -0.269 1.269 20 N -0.570 5.570 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.345 0.655 28 H 0.350 0.650 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.395 0.605 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.960 2.233 -5.006 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 C -0.195 4.195 4 N -0.379 5.379 5 C 0.026 3.974 6 N -0.353 5.353 7 C 0.153 3.847 8 C -0.396 4.396 9 C -0.053 4.053 10 C -0.371 4.371 11 C 0.134 3.866 12 C -0.508 4.508 13 H 0.104 0.896 14 C -0.194 4.194 15 N -0.377 5.377 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.181 1.181 19 H -0.194 1.194 20 N -0.293 5.293 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.231 0.769 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.998 2.892 -5.493 11.769 hybrid contribution -0.480 -0.448 0.257 0.705 sum -10.478 2.444 -5.236 11.966 Atomic orbital electron populations 1.22482 0.94079 1.02805 1.03502 1.20941 0.93598 0.94067 0.89736 1.21784 1.00814 0.94431 1.02455 1.58703 1.68357 1.06690 1.04168 1.21284 0.79615 0.99201 0.97250 1.44189 1.04818 1.62629 1.23656 1.19039 0.89708 0.88610 0.87373 1.20937 0.98853 1.18742 1.01116 1.20996 0.93479 0.94456 0.96415 1.21681 0.95157 1.16841 1.03459 1.18678 0.94101 0.86948 0.86842 1.19911 0.90735 1.26932 1.13201 0.89617 1.26953 1.05433 0.93078 0.93901 1.70202 1.38837 1.16044 1.12586 0.85154 0.75872 0.79883 0.78452 1.18664 1.18053 1.19359 1.68126 1.04205 1.27504 1.29441 0.91389 0.90766 0.91911 0.94138 0.90888 0.91891 0.84161 0.83540 0.93424 0.92810 0.76915 0.86625 0.85365 0.88047 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 8.76 71.98 0.63 -2.18 16 2 C 0.11 2.54 0.88 3.53 0.00 2.54 16 3 C -0.14 -3.30 8.56 71.98 0.62 -2.69 16 4 N -0.85 -19.40 8.56 -151.56 -1.30 -20.70 16 5 C 0.15 4.71 3.96 86.38 0.34 5.06 16 6 N -0.72 -30.13 5.29 -344.99 -1.83 -31.96 16 7 C 0.39 20.26 7.65 133.42 1.02 21.28 16 8 C -0.37 -17.47 9.34 22.73 0.21 -17.26 16 9 C -0.03 -1.38 10.15 22.39 0.23 -1.16 16 10 C -0.35 -18.59 9.83 22.87 0.22 -18.36 16 11 C 0.26 15.57 6.52 40.18 0.26 15.83 16 12 C -0.48 -27.44 9.13 23.46 0.21 -27.23 16 13 H 0.09 4.64 7.86 -2.91 -0.02 4.62 16 14 C 0.03 1.50 5.47 85.29 0.47 1.97 16 15 N -0.75 -42.51 11.56 21.84 0.25 -42.26 16 16 Si 0.99 39.99 29.57 68.60 2.03 42.01 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 20 N -0.57 -33.63 7.99 -186.58 -1.49 -35.12 16 21 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.04 1.23 6.86 -2.38 -0.02 1.21 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.34 7.42 9.00 -89.69 -0.81 6.62 16 28 H 0.35 6.35 8.98 -89.70 -0.81 5.54 16 29 H 0.05 1.47 7.92 -2.39 -0.02 1.45 16 30 H 0.05 1.66 7.92 -2.39 -0.02 1.64 16 31 H 0.40 17.52 7.28 -92.71 -0.67 16.85 16 32 H 0.12 4.69 6.68 -2.91 -0.02 4.67 16 33 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.10 5.05 8.06 -2.91 -0.02 5.02 16 35 H 0.28 14.09 8.29 -92.71 -0.77 13.32 16 Total: -1.00 -67.73 292.15 0.71 -67.02 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: -1.18 Total: 43.20 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.22 Total: -22.18 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -4.36 Total: -130.04 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -67.73 0.71 -67.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171196538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.574 kcal (2) G-P(sol) polarization free energy of solvation -67.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds