Wall clock time and date at job start Sun Mar 29 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46682 * 2 1 4 4 C 1.53003 * 109.47005 * 119.99853 * 2 1 3 5 5 C 1.52998 * 109.47034 * 185.00176 * 4 2 1 6 6 C 1.50701 * 109.47001 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99912 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99440 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00088 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47306 * 60.00109 * 10 8 6 12 12 H 1.48497 * 109.47214 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47431 * 299.99999 * 10 8 6 14 14 N 1.46897 * 109.47337 * 239.99885 * 2 1 3 15 15 C 1.46897 * 110.99772 * 84.99731 * 14 2 1 16 16 C 1.50706 * 109.46900 * 179.97438 * 15 14 2 17 17 N 1.31793 * 119.12498 * 269.73272 * 16 15 14 18 18 C 1.32328 * 120.81515 * 179.76153 * 17 16 15 19 19 C 1.38596 * 119.10597 * 0.50375 * 18 17 16 20 20 C 1.38592 * 118.39880 * 359.75054 * 19 18 17 21 21 N 1.31796 * 119.11883 * 90.00466 * 16 15 14 22 22 H 1.09002 * 109.47107 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47516 * 299.99972 * 1 2 3 24 24 H 1.08998 * 109.47143 * 60.00327 * 1 2 3 25 25 H 1.09007 * 109.47255 * 305.00324 * 4 2 1 26 26 H 1.08997 * 109.47313 * 64.99974 * 4 2 1 27 27 H 1.08996 * 109.47301 * 299.99649 * 5 4 2 28 28 H 1.09002 * 109.47016 * 60.00199 * 5 4 2 29 29 H 0.97001 * 119.99161 * 179.97438 * 9 8 6 30 30 H 1.00899 * 110.99868 * 321.04772 * 14 2 1 31 31 H 1.09000 * 109.46743 * 60.00757 * 15 14 2 32 32 H 1.09000 * 109.47313 * 299.99940 * 15 14 2 33 33 H 1.08005 * 120.44661 * 180.27513 * 18 17 16 34 34 H 1.08002 * 120.79705 * 179.77181 * 19 18 17 35 35 H 1.08005 * 120.44426 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3242 2.5439 7 1 3.3686 -1.8046 3.2131 8 6 5.4185 -1.3613 2.8152 9 7 6.2690 -0.7758 2.0006 10 14 6.0411 -2.2419 4.3404 11 1 5.6477 -3.6726 4.2812 12 1 7.5211 -2.1372 4.4029 13 1 5.4496 -1.6155 5.5499 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3468 16 6 2.5886 -0.5216 -3.5557 17 7 3.8847 -0.5553 -3.7919 18 6 4.3660 -1.2028 -4.8408 19 6 3.4863 -1.8411 -5.7009 20 6 2.1301 -1.7789 -5.4221 21 7 1.7228 -1.1167 -4.3514 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6053 -0.2617 2.1371 26 1 1.7516 -1.7715 1.2057 27 1 3.9995 -1.0728 0.4261 28 1 3.8531 0.4370 1.3574 29 1 7.2196 -0.8017 2.1917 30 1 1.4496 -1.4979 -1.4100 31 1 2.7589 1.0461 -2.1181 32 1 1.0870 0.6162 -2.5525 33 1 5.4296 -1.2303 -5.0263 34 1 3.8490 -2.3743 -6.5672 35 1 1.4154 -2.2648 -6.0700 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:16 Heat of formation + Delta-G solvation = 36.548236 kcal Electronic energy + Delta-G solvation = -15981.200556 eV Core-core repulsion = 13399.905768 eV Total energy + Delta-G solvation = -2581.294789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96435 -37.19277 -33.67741 -33.62233 -32.55058 -30.64729 -28.91099 -25.98172 -24.85646 -24.52795 -22.30175 -21.24207 -19.79541 -17.50394 -17.01559 -16.04134 -15.56710 -15.41259 -14.59783 -14.33152 -14.26387 -13.81985 -13.47264 -12.75794 -12.64263 -12.26174 -12.17369 -11.70674 -11.36016 -11.10575 -10.85739 -10.80278 -10.72433 -10.42070 -10.17825 -9.63671 -9.52324 -9.18006 -9.14436 -8.84545 -8.16746 -7.87822 -5.81295 -3.82600 0.86326 1.11029 3.42615 3.46521 3.49185 3.68936 3.95348 4.18510 4.55378 4.59391 4.75774 4.93656 5.06335 5.29462 5.41634 5.46665 5.53543 5.61609 5.72731 5.75434 5.92098 6.14959 6.32182 6.38290 6.45120 6.70840 6.93837 7.01215 7.35014 7.48196 7.77974 7.91720 8.15878 8.16434 8.32605 8.64590 9.26608 9.79358 11.29598 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.005645 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.174007 B = 4958.846431 C = 5833.242324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H 0.075 0.925 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.893 5.893 10 Si 0.887 3.113 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.279 1.279 14 N -0.662 5.662 15 C 0.127 3.873 16 C 0.330 3.670 17 N -0.492 5.492 18 C 0.150 3.850 19 C -0.238 4.238 20 C 0.143 3.857 21 N -0.521 5.521 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.008 0.992 29 H 0.258 0.742 30 H 0.337 0.663 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.168 0.832 34 H 0.145 0.855 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.802 -0.024 -15.403 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.023 4.023 3 H 0.094 0.906 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.293 5.293 15 C -0.004 4.004 16 C 0.062 3.938 17 N -0.205 5.205 18 C -0.017 4.017 19 C -0.260 4.260 20 C -0.023 4.023 21 N -0.235 5.235 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.185 0.815 34 H 0.163 0.837 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.274 0.608 -14.456 16.668 hybrid contribution -0.112 -1.033 -0.266 1.073 sum -8.386 -0.425 -14.722 16.948 Atomic orbital electron populations 1.22546 0.98380 1.01675 1.01394 1.21764 0.91047 0.98493 0.91013 0.90645 1.21631 1.00711 0.98345 0.92884 1.19000 0.88213 0.96565 0.97041 1.21317 0.91826 1.34097 1.08496 0.93215 1.24999 0.97149 0.95824 0.96452 1.69985 1.02147 1.44296 1.36878 0.86756 0.77559 0.80276 0.83926 1.20445 1.21428 1.20434 1.60494 1.57982 1.08705 1.02098 1.20662 0.99491 0.94593 0.85638 1.23210 0.85160 0.91292 0.94095 1.68366 1.15969 1.17921 1.18277 1.23344 1.01117 0.89115 0.88101 1.22894 0.96034 1.03868 1.03184 1.23164 0.94464 0.92075 0.92579 1.68260 1.40462 1.09657 1.05170 0.92748 0.92098 0.93554 0.93336 0.93534 0.94850 0.97388 0.93243 0.84487 0.88354 0.93089 0.81500 0.83731 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 9.16 37.16 0.34 -2.17 16 2 C 0.09 1.49 2.59 -67.71 -0.18 1.32 16 3 H 0.08 1.33 7.80 -51.93 -0.40 0.93 16 4 C -0.10 -2.08 4.83 -26.73 -0.13 -2.21 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 7 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -28.09 13.29 55.43 0.74 -27.36 16 10 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 N -0.66 -11.55 5.69 -107.99 -0.61 -12.17 16 15 C 0.13 1.97 5.92 -4.97 -0.03 1.94 16 16 C 0.33 5.19 7.16 -157.19 -1.12 4.07 16 17 N -0.49 -8.03 10.33 -10.72 -0.11 -8.14 16 18 C 0.15 1.84 11.30 -17.21 -0.19 1.64 16 19 C -0.24 -2.31 10.17 -39.32 -0.40 -2.71 16 20 C 0.14 1.53 11.30 -17.21 -0.19 1.34 16 21 N -0.52 -7.29 10.33 -10.72 -0.11 -7.40 16 22 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.58 7.45 -51.93 -0.39 0.19 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.99 7.75 -51.93 -0.40 0.58 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.34 5.60 8.46 -39.29 -0.33 5.27 16 31 H 0.10 1.59 8.06 -51.93 -0.42 1.17 16 32 H 0.05 0.70 7.44 -51.93 -0.39 0.31 16 33 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -34.15 300.25 -8.30 -42.45 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.25 Total: 0.85 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.45 Total: -10.23 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.10 Total: -55.07 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.15 -8.30 -42.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.998 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds