Wall clock time and date at job start Sun Mar 29 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46682 * 2 1 4 4 C 1.53003 * 109.47005 * 119.99853 * 2 1 3 5 5 C 1.52998 * 109.47034 * 185.00176 * 4 2 1 6 6 C 1.50701 * 109.47001 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99912 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99440 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00088 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47306 * 60.00109 * 10 8 6 12 12 H 1.48497 * 109.47214 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47431 * 299.99999 * 10 8 6 14 14 N 1.46897 * 109.47337 * 239.99885 * 2 1 3 15 15 C 1.46897 * 110.99772 * 84.99731 * 14 2 1 16 16 C 1.50706 * 109.46900 * 179.97438 * 15 14 2 17 17 N 1.31793 * 119.12498 * 269.73272 * 16 15 14 18 18 C 1.32328 * 120.81515 * 179.76153 * 17 16 15 19 19 C 1.38596 * 119.10597 * 0.50375 * 18 17 16 20 20 C 1.38592 * 118.39880 * 359.75054 * 19 18 17 21 21 N 1.31796 * 119.11883 * 90.00466 * 16 15 14 22 22 H 1.09002 * 109.47107 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47516 * 299.99972 * 1 2 3 24 24 H 1.08998 * 109.47143 * 60.00327 * 1 2 3 25 25 H 1.09007 * 109.47255 * 305.00324 * 4 2 1 26 26 H 1.08997 * 109.47313 * 64.99974 * 4 2 1 27 27 H 1.08996 * 109.47301 * 299.99649 * 5 4 2 28 28 H 1.09002 * 109.47016 * 60.00199 * 5 4 2 29 29 H 0.97001 * 119.99161 * 179.97438 * 9 8 6 30 30 H 1.00899 * 110.99868 * 321.04772 * 14 2 1 31 31 H 1.09000 * 109.46743 * 60.00757 * 15 14 2 32 32 H 1.09000 * 109.47313 * 299.99940 * 15 14 2 33 33 H 1.08005 * 120.44661 * 180.27513 * 18 17 16 34 34 H 1.08002 * 120.79705 * 179.77181 * 19 18 17 35 35 H 1.08005 * 120.44426 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3242 2.5439 7 1 3.3686 -1.8046 3.2131 8 6 5.4185 -1.3613 2.8152 9 7 6.2690 -0.7758 2.0006 10 14 6.0411 -2.2419 4.3404 11 1 5.6477 -3.6726 4.2812 12 1 7.5211 -2.1372 4.4029 13 1 5.4496 -1.6155 5.5499 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3468 16 6 2.5886 -0.5216 -3.5557 17 7 3.8847 -0.5553 -3.7919 18 6 4.3660 -1.2028 -4.8408 19 6 3.4863 -1.8411 -5.7009 20 6 2.1301 -1.7789 -5.4221 21 7 1.7228 -1.1167 -4.3514 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6053 -0.2617 2.1371 26 1 1.7516 -1.7715 1.2057 27 1 3.9995 -1.0728 0.4261 28 1 3.8531 0.4370 1.3574 29 1 7.2196 -0.8017 2.1917 30 1 1.4496 -1.4979 -1.4100 31 1 2.7589 1.0461 -2.1181 32 1 1.0870 0.6162 -2.5525 33 1 5.4296 -1.2303 -5.0263 34 1 3.8490 -2.3743 -6.5672 35 1 1.4154 -2.2648 -6.0700 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:16 Heat of formation + Delta-G solvation = 12.450266 kcal Electronic energy + Delta-G solvation = -15982.245523 eV Core-core repulsion = 13399.905768 eV Total energy + Delta-G solvation = -2582.339755 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.93266 -38.59733 -35.45486 -34.65524 -34.11478 -32.18842 -30.45617 -27.23530 -26.74548 -25.44651 -23.50191 -22.99146 -21.42275 -18.50285 -18.38226 -17.92555 -16.82481 -16.53972 -16.30133 -15.72563 -15.46643 -15.05156 -14.49031 -14.35190 -14.13087 -13.86812 -13.61569 -13.23060 -13.02066 -12.81138 -12.61979 -12.33395 -11.91461 -11.83661 -11.66922 -11.52557 -11.21465 -10.97048 -10.50942 -10.46189 -10.17463 -9.21443 -8.11687 -6.23009 -0.07748 0.20795 1.39645 1.43807 1.51432 2.44734 2.67196 2.96348 3.19908 3.28077 3.50245 3.78490 4.04003 4.13134 4.24045 4.29668 4.40442 4.44133 4.50633 4.69676 4.79742 4.92081 4.98337 5.05201 5.10639 5.29499 5.47437 5.47924 5.59918 5.87776 6.03869 6.09566 6.17716 6.35511 6.49193 6.97200 7.17626 7.44961 8.99543 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024170 B = 0.005645 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.174007 B = 4958.846431 C = 5833.242324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 H 0.066 0.934 4 C -0.087 4.087 5 C 0.039 3.961 6 C -0.544 4.544 7 H 0.057 0.943 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.266 1.266 14 N -0.683 5.683 15 C 0.134 3.866 16 C 0.306 3.694 17 N -0.541 5.541 18 C 0.127 3.873 19 C -0.214 4.214 20 C 0.136 3.864 21 N -0.534 5.534 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.045 0.955 27 H -0.002 1.002 28 H -0.023 1.023 29 H 0.261 0.739 30 H 0.341 0.659 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.189 0.811 34 H 0.190 0.810 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.916 -1.346 -16.082 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 H 0.084 0.916 4 C -0.125 4.125 5 C 0.001 3.999 6 C -0.582 4.582 7 H 0.075 0.925 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.190 1.190 14 N -0.315 5.315 15 C 0.003 3.997 16 C 0.038 3.962 17 N -0.256 5.256 18 C -0.038 4.038 19 C -0.236 4.236 20 C -0.030 4.030 21 N -0.249 5.249 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.017 0.983 28 H -0.004 1.004 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.206 0.794 34 H 0.207 0.793 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.404 -0.718 -15.147 17.843 hybrid contribution 0.286 -0.654 -0.181 0.737 sum -9.118 -1.372 -15.329 17.888 Atomic orbital electron populations 1.22381 0.94918 1.02544 1.02776 1.21566 0.93648 0.97134 0.89375 0.91564 1.21457 0.96478 0.99019 0.95558 1.18813 0.92267 0.93877 0.94899 1.21794 0.92566 1.34467 1.09400 0.92520 1.25998 0.97394 0.96533 1.00093 1.70147 1.02543 1.45630 1.39083 0.85539 0.76989 0.79182 0.79529 1.19336 1.20872 1.19040 1.60348 1.58692 1.09548 1.02910 1.20531 0.99977 0.93806 0.85340 1.23052 0.85451 0.92860 0.94814 1.68281 1.16704 1.19960 1.20624 1.23874 1.02813 0.89246 0.87859 1.23332 0.95197 1.01828 1.03207 1.23959 0.95998 0.91128 0.91889 1.68251 1.40285 1.10197 1.06141 0.92102 0.91125 0.91733 0.92575 0.93601 0.98325 1.00438 0.93072 0.84063 0.90294 0.91199 0.79443 0.79271 0.77729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 9.16 71.98 0.66 -3.70 16 2 C 0.09 3.22 2.59 44.92 0.12 3.34 16 3 H 0.07 2.42 7.80 -2.39 -0.02 2.40 16 4 C -0.09 -3.77 4.83 30.59 0.15 -3.62 16 5 C 0.04 2.19 4.86 29.85 0.15 2.34 16 6 C -0.54 -32.91 9.11 25.60 0.23 -32.68 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 9 N -0.93 -60.33 13.29 21.45 0.28 -60.05 16 10 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 N -0.68 -24.54 5.69 -495.58 -2.82 -27.36 16 15 C 0.13 4.31 5.92 85.56 0.51 4.81 16 16 C 0.31 9.82 7.16 138.75 0.99 10.81 16 17 N -0.54 -18.22 10.33 -187.84 -1.94 -20.16 16 18 C 0.13 3.03 11.30 84.70 0.96 3.99 16 19 C -0.21 -3.56 10.17 22.44 0.23 -3.34 16 20 C 0.14 2.54 11.30 84.70 0.96 3.50 16 21 N -0.53 -14.41 10.33 -187.84 -1.94 -16.35 16 22 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.06 1.47 7.45 -2.39 -0.02 1.45 16 25 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.00 -0.11 7.75 -2.39 -0.02 -0.13 16 28 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 29 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.34 11.45 8.46 -89.69 -0.76 10.69 16 31 H 0.08 2.76 8.06 -2.39 -0.02 2.74 16 32 H 0.07 1.91 7.44 -2.39 -0.02 1.89 16 33 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.87 300.25 1.32 -75.55 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.31 Total: 14.20 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 5.41 Total: -14.26 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -6.42 Total: -123.92 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -76.87 1.32 -75.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.996 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds