Wall clock time and date at job start Sun Mar 29 2020 22:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 C 1.50705 * 109.47268 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99831 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00545 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99757 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00228 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47480 * 89.99772 * 10 8 6 12 12 H 1.48505 * 109.46783 * 209.99582 * 10 8 6 13 13 H 1.48503 * 109.47091 * 329.99516 * 10 8 6 14 14 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 15 15 C 1.46892 * 111.00363 * 85.00189 * 14 2 1 16 16 C 1.50698 * 109.47411 * 179.97438 * 15 14 2 17 17 C 1.38594 * 120.79735 * 269.72073 * 16 15 14 18 18 N 1.32336 * 119.10435 * 179.72206 * 17 16 15 19 19 C 1.31802 * 120.81596 * 0.56159 * 18 17 16 20 20 N 1.31792 * 121.75310 * 359.70944 * 19 18 17 21 21 C 1.32341 * 120.82048 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 26 26 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 27 27 H 1.08998 * 109.47867 * 299.99927 * 5 4 2 28 28 H 1.08993 * 109.47122 * 60.00537 * 5 4 2 29 29 H 0.97001 * 119.99570 * 180.02562 * 9 8 6 30 30 H 1.00903 * 111.00184 * 321.04231 * 14 2 1 31 31 H 1.08999 * 109.46953 * 300.00101 * 15 14 2 32 32 H 1.09001 * 109.47256 * 59.99520 * 15 14 2 33 33 H 1.08004 * 120.45118 * 359.97438 * 17 16 15 34 34 H 1.07991 * 119.12388 * 179.73637 * 19 18 17 35 35 H 1.07998 * 120.44787 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 6 4.0674 -1.3243 2.5437 7 1 3.3689 -1.8054 3.2125 8 6 5.4185 -1.3606 2.8154 9 7 6.2691 -0.7752 2.0007 10 14 6.0414 -2.2424 4.3398 11 1 6.3220 -3.6629 4.0101 12 1 7.2874 -1.5891 4.8152 13 1 5.0099 -2.1763 5.4061 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2225 -2.3469 16 6 2.5884 -0.5216 -3.5558 17 6 3.9441 -0.5793 -3.8374 18 7 4.3520 -1.2467 -4.9049 19 6 3.4861 -1.8419 -5.7007 20 7 2.1896 -1.8035 -5.4673 21 6 1.7086 -1.1594 -4.4160 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6055 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2056 27 1 3.9995 -1.0728 0.4259 28 1 3.8532 0.4369 1.3572 29 1 7.2197 -0.8011 2.1918 30 1 1.4495 -1.4979 -1.4101 31 1 1.0871 0.6163 -2.5525 32 1 2.7588 1.0461 -2.1183 33 1 4.6586 -0.0896 -3.1922 34 1 3.8487 -2.3755 -6.5667 35 1 0.6450 -1.1322 -4.2303 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:10 Heat of formation + Delta-G solvation = 31.205311 kcal Electronic energy + Delta-G solvation = -15976.838359 eV Core-core repulsion = 13395.311883 eV Total energy + Delta-G solvation = -2581.526475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97816 -37.40681 -33.99420 -33.67182 -32.69735 -30.43513 -28.87329 -25.82498 -24.92836 -24.55897 -22.29196 -21.34208 -19.87736 -17.63720 -17.53593 -16.14490 -15.56888 -15.26414 -14.51306 -14.38958 -14.13132 -13.69597 -13.48071 -13.14220 -12.85325 -12.40059 -12.32898 -11.89796 -11.50272 -11.20742 -10.92124 -10.80476 -10.75471 -10.45383 -10.26150 -9.69542 -9.46624 -9.26667 -9.20040 -8.92794 -8.25063 -8.00283 -5.89831 -3.90864 0.86857 1.08824 3.36876 3.43042 3.45937 3.74816 4.11476 4.23864 4.47317 4.53395 4.62554 4.80356 4.86759 5.27497 5.36070 5.46002 5.49218 5.52459 5.60448 5.72859 5.92724 6.04922 6.21078 6.33456 6.39300 6.60971 6.83904 6.93468 7.24603 7.37550 7.65672 7.82821 8.05348 8.05966 8.20299 8.56055 9.17827 9.72022 11.21290 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.005607 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.374774 B = 4992.762677 C = 5877.116815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.667 5.667 15 C 0.106 3.894 16 C -0.179 4.179 17 C 0.173 3.827 18 N -0.520 5.520 19 C 0.284 3.716 20 N -0.525 5.525 21 C 0.146 3.854 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.007 0.993 29 H 0.258 0.742 30 H 0.336 0.664 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.193 0.807 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 2.120 -11.958 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.093 0.907 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.297 5.297 15 C -0.024 4.024 16 C -0.183 4.183 17 C 0.007 3.993 18 N -0.233 5.233 19 C -0.004 4.004 20 N -0.238 5.238 21 C -0.020 4.020 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.154 0.846 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.190 0.810 34 H 0.209 0.791 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.961 1.745 -12.611 15.569 hybrid contribution -0.816 -0.019 1.393 1.615 sum -9.776 1.727 -11.218 14.980 Atomic orbital electron populations 1.22545 0.98456 1.01634 1.01397 1.21773 0.91021 0.98451 0.91259 0.90740 1.21636 1.00681 0.98402 0.92959 1.18996 0.88227 0.96496 0.97049 1.21342 0.91867 1.34034 1.08519 0.93134 1.24989 0.97135 0.95739 0.96518 1.69971 1.02175 1.44323 1.36989 0.86686 0.78287 0.79865 0.83673 1.20795 1.21331 1.20035 1.60579 1.57992 1.08745 1.02388 1.20765 0.99378 0.94869 0.87388 1.21671 0.96204 1.01579 0.98862 1.23313 0.94011 0.90615 0.91396 1.68483 1.40257 1.09197 1.05337 1.24932 0.84925 0.93287 0.97296 1.68394 1.17047 1.18315 1.20086 1.23089 1.00523 0.89680 0.88680 0.92078 0.93688 0.92733 0.93367 0.93480 0.95006 0.97437 0.93224 0.84635 0.94358 0.89435 0.80970 0.79077 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.16 37.16 0.34 -1.87 16 2 C 0.08 1.30 2.59 -67.71 -0.18 1.12 16 3 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 4 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 5 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 6 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 7 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 N -0.67 -9.81 5.69 -108.00 -0.61 -10.42 16 15 C 0.11 1.27 5.66 -4.98 -0.03 1.24 16 16 C -0.18 -2.19 5.43 -104.36 -0.57 -2.76 16 17 C 0.17 2.37 11.01 -17.20 -0.19 2.18 16 18 N -0.52 -7.34 10.44 -14.58 -0.15 -7.49 16 19 C 0.28 3.51 12.29 -92.15 -1.13 2.38 16 20 N -0.53 -6.64 10.44 -14.58 -0.15 -6.80 16 21 C 0.15 1.68 11.01 -17.20 -0.19 1.49 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.47 7.45 -51.93 -0.39 0.09 16 24 H 0.05 0.65 8.13 -51.93 -0.42 0.22 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.88 7.75 -51.93 -0.40 0.47 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.34 4.58 8.46 -39.29 -0.33 4.25 16 31 H 0.04 0.38 7.40 -51.93 -0.38 0.00 16 32 H 0.09 1.09 8.01 -51.93 -0.42 0.67 16 33 H 0.17 2.29 8.06 -52.48 -0.42 1.87 16 34 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -32.08 299.91 -8.55 -40.63 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.25 Total: 0.40 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.62 Total: -11.33 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.18 Total: -51.21 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.08 -8.55 -40.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.835 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds