Wall clock time and date at job start Sun Mar 29 2020 22:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 C 1.50705 * 109.47268 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99831 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00545 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99757 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00228 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47480 * 89.99772 * 10 8 6 12 12 H 1.48505 * 109.46783 * 209.99582 * 10 8 6 13 13 H 1.48503 * 109.47091 * 329.99516 * 10 8 6 14 14 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 15 15 C 1.46892 * 111.00363 * 85.00189 * 14 2 1 16 16 C 1.50698 * 109.47411 * 179.97438 * 15 14 2 17 17 C 1.38594 * 120.79735 * 269.72073 * 16 15 14 18 18 N 1.32336 * 119.10435 * 179.72206 * 17 16 15 19 19 C 1.31802 * 120.81596 * 0.56159 * 18 17 16 20 20 N 1.31792 * 121.75310 * 359.70944 * 19 18 17 21 21 C 1.32341 * 120.82048 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 26 26 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 27 27 H 1.08998 * 109.47867 * 299.99927 * 5 4 2 28 28 H 1.08993 * 109.47122 * 60.00537 * 5 4 2 29 29 H 0.97001 * 119.99570 * 180.02562 * 9 8 6 30 30 H 1.00903 * 111.00184 * 321.04231 * 14 2 1 31 31 H 1.08999 * 109.46953 * 300.00101 * 15 14 2 32 32 H 1.09001 * 109.47256 * 59.99520 * 15 14 2 33 33 H 1.08004 * 120.45118 * 359.97438 * 17 16 15 34 34 H 1.07991 * 119.12388 * 179.73637 * 19 18 17 35 35 H 1.07998 * 120.44787 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 6 4.0674 -1.3243 2.5437 7 1 3.3689 -1.8054 3.2125 8 6 5.4185 -1.3606 2.8154 9 7 6.2691 -0.7752 2.0007 10 14 6.0414 -2.2424 4.3398 11 1 6.3220 -3.6629 4.0101 12 1 7.2874 -1.5891 4.8152 13 1 5.0099 -2.1763 5.4061 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2225 -2.3469 16 6 2.5884 -0.5216 -3.5558 17 6 3.9441 -0.5793 -3.8374 18 7 4.3520 -1.2467 -4.9049 19 6 3.4861 -1.8419 -5.7007 20 7 2.1896 -1.8035 -5.4673 21 6 1.7086 -1.1594 -4.4160 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6055 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2056 27 1 3.9995 -1.0728 0.4259 28 1 3.8532 0.4369 1.3572 29 1 7.2197 -0.8011 2.1918 30 1 1.4495 -1.4979 -1.4101 31 1 1.0871 0.6163 -2.5525 32 1 2.7588 1.0461 -2.1183 33 1 4.6586 -0.0896 -3.1922 34 1 3.8487 -2.3755 -6.5667 35 1 0.6450 -1.1322 -4.2303 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:10 Heat of formation + Delta-G solvation = 10.379041 kcal Electronic energy + Delta-G solvation = -15977.741453 eV Core-core repulsion = 13395.311883 eV Total energy + Delta-G solvation = -2582.429570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94390 -38.62581 -35.58080 -34.65349 -34.37076 -32.01187 -30.19254 -27.08586 -26.55550 -25.54010 -23.46631 -22.91469 -21.36160 -18.56195 -18.51319 -18.35256 -16.74602 -16.53142 -16.29598 -15.58918 -15.22937 -14.60019 -14.49647 -14.46099 -14.29487 -14.05265 -13.67977 -13.21824 -12.98514 -12.84418 -12.69209 -12.32086 -11.95116 -11.80617 -11.63707 -11.50666 -11.19786 -10.95058 -10.49374 -10.44169 -10.20908 -9.12521 -8.13101 -6.22843 -0.08671 0.10534 1.40079 1.41285 1.51938 2.44111 2.76596 3.19604 3.26355 3.28959 3.41904 3.69705 3.83459 3.91060 4.11246 4.36538 4.48516 4.53860 4.61104 4.75540 4.82413 4.97806 5.02765 5.11137 5.15488 5.33823 5.44697 5.49537 5.60842 5.90585 5.97005 6.04853 6.24921 6.36503 6.59965 6.97529 7.09457 7.45272 8.97953 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.005607 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.374774 B = 4992.762677 C = 5877.116815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 H 0.067 0.933 4 C -0.090 4.090 5 C 0.038 3.962 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.958 3.042 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.263 1.263 14 N -0.690 5.690 15 C 0.114 3.886 16 C -0.179 4.179 17 C 0.152 3.848 18 N -0.544 5.544 19 C 0.279 3.721 20 N -0.535 5.535 21 C 0.153 3.847 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.004 0.996 28 H -0.021 1.021 29 H 0.260 0.740 30 H 0.343 0.657 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.220 0.780 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.006 1.629 -11.956 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 H 0.085 0.915 4 C -0.128 4.128 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.783 3.217 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.322 5.322 15 C -0.016 4.016 16 C -0.183 4.183 17 C -0.014 4.014 18 N -0.258 5.258 19 C -0.008 4.008 20 N -0.248 5.248 21 C -0.013 4.013 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.022 0.978 28 H -0.002 1.002 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.180 0.820 34 H 0.236 0.764 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.826 1.256 -12.610 16.667 hybrid contribution -0.219 0.133 1.353 1.377 sum -11.045 1.389 -11.257 15.831 Atomic orbital electron populations 1.22398 0.95124 1.02513 1.02797 1.21519 0.93483 0.97113 0.89567 0.91494 1.21470 0.96457 0.99035 0.95818 1.18831 0.92286 0.93934 0.94866 1.21837 0.92437 1.34243 1.09560 0.92799 1.25915 0.97469 0.96513 0.99874 1.70111 1.02511 1.45652 1.38993 0.85563 0.77861 0.78576 0.79733 1.20112 1.20820 1.18763 1.60415 1.58839 1.09775 1.03162 1.20710 1.00751 0.93931 0.86173 1.21661 0.95573 1.01883 0.99200 1.23351 0.94959 0.91301 0.91745 1.68479 1.41247 1.10130 1.05954 1.25510 0.84920 0.92788 0.97625 1.68492 1.17028 1.18713 1.20584 1.23608 1.01867 0.88170 0.87641 0.91800 0.91173 0.92097 0.93176 0.93704 0.97792 1.00215 0.93099 0.83840 0.91183 0.90537 0.81979 0.76372 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 9.16 71.98 0.66 -2.95 16 2 C 0.09 2.75 2.59 44.92 0.12 2.87 16 3 H 0.07 2.09 7.80 -2.39 -0.02 2.07 16 4 C -0.09 -3.57 4.83 30.59 0.15 -3.42 16 5 C 0.04 2.01 4.86 29.85 0.15 2.16 16 6 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 7 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 10 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 14 N -0.69 -19.65 5.69 -495.59 -2.82 -22.47 16 15 C 0.11 2.57 5.66 85.56 0.48 3.05 16 16 C -0.18 -4.21 5.43 -19.69 -0.11 -4.32 16 17 C 0.15 4.26 11.01 84.70 0.93 5.19 16 18 N -0.54 -15.48 10.44 -200.05 -2.09 -17.57 16 19 C 0.28 6.63 12.29 180.88 2.22 8.85 16 20 N -0.53 -12.56 10.44 -200.05 -2.09 -14.65 16 21 C 0.15 3.17 11.01 84.70 0.93 4.10 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.17 7.45 -2.39 -0.02 1.16 16 24 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.00 0.21 7.75 -2.39 -0.02 0.19 16 28 H -0.02 -1.19 8.14 -2.39 -0.02 -1.20 16 29 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.34 8.74 8.46 -89.69 -0.76 7.98 16 31 H 0.07 1.16 7.40 -2.39 -0.02 1.14 16 32 H 0.08 1.89 8.01 -2.39 -0.02 1.87 16 33 H 0.16 4.68 8.06 -2.91 -0.02 4.65 16 34 H 0.22 3.62 8.06 -2.92 -0.02 3.60 16 35 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -70.02 299.91 1.85 -68.17 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.31 Total: 12.25 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 6.23 Total: -15.34 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -6.71 Total: -112.43 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.02 1.85 -68.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.551 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds