Wall clock time and date at job start Sun Mar 29 2020 22:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47018 * 2 1 4 4 C 1.53001 * 109.47126 * 119.99932 * 2 1 3 5 5 C 1.53003 * 109.46995 * 185.00246 * 4 2 1 6 6 C 1.50703 * 109.46897 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00179 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99771 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00326 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47178 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47423 * 119.99729 * 10 8 6 13 13 H 1.48500 * 109.46936 * 239.99626 * 10 8 6 14 14 N 1.46902 * 109.47333 * 239.99987 * 2 1 3 15 15 C 1.46899 * 110.99733 * 84.99789 * 14 2 1 16 16 C 1.50706 * 109.46789 * 179.97438 * 15 14 2 17 17 C 1.38622 * 120.44222 * 95.00380 * 16 15 14 18 18 C 1.38581 * 118.39650 * 180.02562 * 17 16 15 19 19 N 1.32353 * 119.10338 * 359.97438 * 18 17 16 20 20 C 1.31783 * 120.81962 * 0.02562 * 19 18 17 21 21 N 1.31813 * 121.75619 * 359.71735 * 20 19 18 22 22 H 1.08998 * 109.47018 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47124 * 300.00026 * 1 2 3 24 24 H 1.08996 * 109.47133 * 60.00491 * 1 2 3 25 25 H 1.09004 * 109.47147 * 305.00077 * 4 2 1 26 26 H 1.09000 * 109.47441 * 65.00267 * 4 2 1 27 27 H 1.09004 * 109.47035 * 299.99900 * 5 4 2 28 28 H 1.08996 * 109.47597 * 60.00189 * 5 4 2 29 29 H 0.96996 * 120.00137 * 180.02562 * 9 8 6 30 30 H 1.00902 * 110.99760 * 321.04718 * 14 2 1 31 31 H 1.08999 * 109.47030 * 60.00242 * 15 14 2 32 32 H 1.08998 * 109.47294 * 300.00222 * 15 14 2 33 33 H 1.07992 * 120.80448 * 0.02562 * 17 16 15 34 34 H 1.07996 * 120.44542 * 180.02562 * 18 17 16 35 35 H 1.07996 * 119.11931 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 6 4.0672 -1.3242 2.5439 7 1 3.3688 -1.8046 3.2130 8 6 5.4184 -1.3603 2.8156 9 7 6.2690 -0.7749 2.0011 10 14 6.0413 -2.2422 4.3400 11 1 4.8914 -2.8145 5.0853 12 1 6.9640 -3.3341 3.9381 13 1 6.7635 -1.2785 5.2089 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3469 16 6 2.5886 -0.5215 -3.5557 17 6 1.6988 -1.0692 -4.4667 18 6 2.2105 -1.7452 -5.5629 19 7 3.5229 -1.8443 -5.7030 20 6 4.3388 -1.3107 -4.8163 21 7 3.8882 -0.6565 -3.7644 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.6054 -0.2617 2.1370 26 1 1.7517 -1.7715 1.2056 27 1 3.9995 -1.0727 0.4259 28 1 3.8532 0.4370 1.3574 29 1 7.2196 -0.8007 2.1921 30 1 1.4496 -1.4979 -1.4100 31 1 2.7588 1.0462 -2.1182 32 1 1.0871 0.6163 -2.5525 33 1 0.6326 -0.9716 -4.3256 34 1 1.5474 -2.1845 -6.2934 35 1 5.4050 -1.4077 -4.9579 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:53 Heat of formation + Delta-G solvation = 11.429350 kcal Electronic energy + Delta-G solvation = -15970.109915 eV Core-core repulsion = 13387.725889 eV Total energy + Delta-G solvation = -2582.384025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91633 -38.65278 -35.69415 -34.80340 -33.61441 -32.25696 -30.46954 -27.25395 -26.78168 -25.30766 -23.52013 -22.99263 -21.41745 -18.51279 -18.39705 -17.90147 -16.71098 -16.51215 -16.33219 -15.79451 -15.53418 -15.12543 -14.56298 -14.42074 -14.11864 -13.85705 -13.59764 -13.19403 -13.00613 -12.86029 -12.57241 -12.29070 -11.88093 -11.78156 -11.60716 -11.52600 -11.21237 -10.96080 -10.57998 -10.48877 -10.15520 -9.16426 -8.12978 -6.24269 -0.05839 0.15107 1.39032 1.40106 1.53104 2.43646 2.74996 3.10583 3.18982 3.28632 3.41573 3.66992 4.01747 4.09814 4.19173 4.29160 4.43780 4.48514 4.61227 4.73115 4.79596 4.81171 4.99469 5.06088 5.13191 5.31933 5.47092 5.48130 5.59641 5.87995 6.03914 6.09968 6.20670 6.34679 6.57399 6.97000 7.18180 7.44175 8.98526 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.005613 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.130779 B = 4987.094078 C = 5881.494348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.062 0.938 4 C -0.088 4.088 5 C 0.038 3.962 6 C -0.542 4.542 7 H 0.057 0.943 8 C -0.004 4.004 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.278 1.278 14 N -0.687 5.687 15 C 0.112 3.888 16 C 0.163 3.837 17 C -0.211 4.211 18 C 0.143 3.857 19 N -0.540 5.540 20 C 0.280 3.720 21 N -0.540 5.540 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.046 0.954 27 H -0.001 1.001 28 H -0.025 1.025 29 H 0.260 0.740 30 H 0.344 0.656 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.183 0.817 34 H 0.207 0.793 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 0.322 -13.625 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.001 3.999 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.201 4.201 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.203 1.203 14 N -0.320 5.320 15 C -0.017 4.017 16 C 0.017 3.983 17 C -0.233 4.233 18 C -0.023 4.023 19 N -0.255 5.255 20 C -0.008 4.008 21 N -0.255 5.255 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.017 0.983 28 H -0.006 1.006 29 H 0.069 0.931 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.200 0.800 34 H 0.224 0.776 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.319 0.370 -13.603 18.356 hybrid contribution -0.634 -0.121 0.721 0.968 sum -12.953 0.248 -12.882 18.270 Atomic orbital electron populations 1.22390 0.94577 1.02726 1.02965 1.21538 0.93818 0.96912 0.89381 0.91921 1.21467 0.96271 0.99130 0.95787 1.18825 0.92500 0.93736 0.94874 1.21859 0.92523 1.34267 1.09369 0.92504 1.25997 0.97466 0.96552 1.00065 1.70154 1.02530 1.45754 1.39045 0.85445 0.78435 0.78262 0.79163 1.18448 1.20611 1.20341 1.60251 1.59061 1.09688 1.02968 1.20839 1.00318 0.94139 0.86432 1.21908 0.88974 0.92394 0.95015 1.23116 1.03740 1.00182 0.96225 1.23916 0.91460 0.91222 0.95673 1.68470 1.06232 1.20401 1.30407 1.25300 1.01798 0.88734 0.84922 1.68303 1.18032 1.17425 1.21758 0.91810 0.91568 0.91045 0.92836 0.93484 0.98289 1.00644 0.93100 0.83699 0.91408 0.89796 0.79978 0.77624 0.77811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 9.16 71.98 0.66 -3.03 16 2 C 0.09 2.97 2.59 44.92 0.12 3.08 16 3 H 0.06 2.14 7.80 -2.39 -0.02 2.12 16 4 C -0.09 -3.68 4.83 30.60 0.15 -3.53 16 5 C 0.04 2.11 4.86 29.85 0.15 2.26 16 6 C -0.54 -32.51 9.11 25.60 0.23 -32.28 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 8 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 9 N -0.93 -60.35 13.29 21.45 0.28 -60.06 16 10 Si 0.96 46.34 29.54 68.60 2.03 48.37 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 N -0.69 -21.80 5.69 -495.56 -2.82 -24.62 16 15 C 0.11 2.98 5.84 85.56 0.50 3.48 16 16 C 0.16 4.42 6.34 42.58 0.27 4.69 16 17 C -0.21 -3.88 9.84 22.44 0.22 -3.65 16 18 C 0.14 2.61 11.30 84.70 0.96 3.57 16 19 N -0.54 -13.48 10.44 -200.05 -2.09 -15.56 16 20 C 0.28 7.95 12.29 180.88 2.22 10.18 16 21 N -0.54 -17.97 10.38 -188.06 -1.95 -19.92 16 22 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 1.22 7.45 -2.39 -0.02 1.20 16 25 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.00 -0.08 7.75 -2.38 -0.02 -0.10 16 28 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 29 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.34 9.47 8.46 -89.69 -0.76 8.71 16 31 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 32 H 0.08 1.55 7.36 -2.39 -0.02 1.53 16 33 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.21 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -76.89 300.06 1.69 -75.19 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.31 Total: 11.61 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.93 Total: -15.00 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -6.57 Total: -120.17 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.89 1.69 -75.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.620 kcal (2) G-P(sol) polarization free energy of solvation -76.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds