Wall clock time and date at job start Sun Mar 29 2020 22:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47332 * 2 1 4 4 C 1.52994 * 109.47260 * 120.00346 * 2 1 3 5 5 C 1.53000 * 109.47366 * 184.99811 * 4 2 1 6 6 C 1.50697 * 109.47475 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99930 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00085 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99854 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47309 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46738 * 120.00231 * 10 8 6 13 13 H 1.48500 * 109.47228 * 239.99819 * 10 8 6 14 14 N 1.46903 * 109.47207 * 240.00710 * 2 1 3 15 15 C 1.46897 * 111.00492 * 84.99771 * 14 2 1 16 16 C 1.50698 * 109.47343 * 180.02562 * 15 14 2 17 17 C 1.38615 * 120.07348 * 95.30695 * 16 15 14 18 18 C 1.38880 * 117.96717 * 180.24292 * 17 16 15 19 19 C 1.38611 * 117.96736 * 359.45738 * 18 17 16 20 20 N 1.31938 * 119.84568 * 0.28403 * 19 18 17 21 21 N 1.28349 * 122.18457 * 359.97438 * 20 19 18 22 22 H 1.09008 * 109.47116 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47027 * 299.99201 * 1 2 3 24 24 H 1.08996 * 109.47252 * 59.99984 * 1 2 3 25 25 H 1.09001 * 109.47442 * 305.00132 * 4 2 1 26 26 H 1.09007 * 109.47328 * 65.00161 * 4 2 1 27 27 H 1.09001 * 109.47103 * 300.00529 * 5 4 2 28 28 H 1.09007 * 109.46612 * 59.99911 * 5 4 2 29 29 H 0.97001 * 120.00137 * 179.97438 * 9 8 6 30 30 H 1.00899 * 110.99830 * 208.95347 * 14 2 1 31 31 H 1.08996 * 109.47239 * 59.99948 * 15 14 2 32 32 H 1.09006 * 109.46623 * 300.00350 * 15 14 2 33 33 H 1.08005 * 121.02224 * 359.97438 * 17 16 15 34 34 H 1.08002 * 121.02028 * 179.74070 * 18 17 16 35 35 H 1.08000 * 120.08030 * 180.29881 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6134 1.3136 6 6 4.0673 -1.3244 2.5436 7 1 3.3688 -1.8048 3.2128 8 6 5.4185 -1.3607 2.8153 9 7 6.2690 -0.7752 2.0008 10 14 6.0412 -2.2414 4.3405 11 1 4.8913 -2.8139 5.0857 12 1 6.9637 -3.3338 3.9392 13 1 6.7637 -1.2772 5.2086 14 7 2.0197 -0.6924 -1.1995 15 6 2.0825 0.2227 -2.3469 16 6 2.5874 -0.5216 -3.5561 17 6 1.6900 -1.0600 -4.4650 18 6 2.2029 -1.7416 -5.5610 19 6 3.5807 -1.8314 -5.6840 20 7 4.3586 -1.2821 -4.7709 21 7 3.8844 -0.6566 -3.7554 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6054 -0.2619 2.1369 26 1 1.7517 -1.7716 1.2054 27 1 3.9994 -1.0728 0.4258 28 1 3.8531 0.4370 1.3573 29 1 7.2196 -0.8004 2.1921 30 1 2.9173 -1.1204 -1.0288 31 1 2.7588 1.0463 -2.1182 32 1 1.0870 0.6165 -2.5525 33 1 0.6243 -0.9566 -4.3231 34 1 1.5485 -2.1842 -6.2973 35 1 4.0164 -2.3494 -6.5256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:48 Heat of formation + Delta-G solvation = 40.643431 kcal Electronic energy + Delta-G solvation = -15985.874298 eV Core-core repulsion = 13404.757090 eV Total energy + Delta-G solvation = -2581.117208 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96203 -37.30333 -34.02923 -33.12451 -32.73426 -30.60776 -29.11109 -26.12858 -24.87051 -24.58518 -22.41216 -21.32345 -19.57058 -17.41768 -16.99525 -16.43479 -15.69563 -15.45733 -14.94478 -14.46316 -14.37266 -13.59682 -13.24792 -12.73920 -12.57341 -12.45190 -12.31686 -11.67997 -11.47072 -11.14080 -10.93259 -10.80161 -10.43975 -10.29611 -10.26770 -9.87193 -9.72664 -9.60132 -9.24508 -8.98761 -8.32117 -8.08679 -5.95020 -3.97885 0.79910 0.90131 3.34432 3.41811 3.45792 3.54046 4.00806 4.42478 4.49919 4.54751 4.63847 4.74630 4.91997 5.21164 5.35327 5.40737 5.52041 5.66578 5.69571 5.78790 5.87944 6.08853 6.13606 6.17972 6.32263 6.47805 6.51890 6.89542 7.09472 7.39053 7.64400 7.79754 7.85939 8.03626 8.46442 8.77568 9.09088 9.66258 11.16003 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.005638 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.528678 B = 4965.036047 C = 5860.582060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.042 0.958 4 C -0.114 4.114 5 C 0.019 3.981 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.682 5.682 15 C 0.110 3.890 16 C 0.081 3.919 17 C -0.102 4.102 18 C -0.124 4.124 19 C 0.029 3.971 20 N -0.241 5.241 21 N -0.232 5.232 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.260 0.740 30 H 0.359 0.641 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 0.436 -14.265 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.060 0.940 4 C -0.152 4.152 5 C -0.018 4.018 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.318 5.318 15 C -0.021 4.021 16 C -0.064 4.064 17 C -0.132 4.132 18 C -0.153 4.153 19 C -0.135 4.135 20 N -0.082 5.082 21 N -0.075 5.075 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.181 0.819 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.603 0.530 -13.915 17.502 hybrid contribution -0.240 -0.338 0.403 0.578 sum -10.843 0.191 -13.512 17.326 Atomic orbital electron populations 1.21801 0.95618 1.01748 1.00275 1.21644 0.94493 0.96353 0.90221 0.94006 1.21833 0.99842 0.99397 0.94144 1.19145 0.88633 0.96998 0.97063 1.21247 0.91960 1.34356 1.08312 0.92661 1.25033 0.97116 0.95623 0.96662 1.69978 1.02348 1.43954 1.36863 0.86564 0.78852 0.79505 0.83243 1.19767 1.21026 1.21059 1.60703 1.35379 1.31678 1.04035 1.20783 1.00222 0.93587 0.87533 1.22905 0.91330 0.95611 0.96570 1.22277 1.02016 0.95306 0.93552 1.22400 0.96733 0.97788 0.98390 1.24325 0.92057 0.97696 0.99438 1.73101 1.32439 1.04429 0.98195 1.73068 1.12864 1.09557 1.11967 0.92352 0.92820 0.93803 0.92543 0.92491 0.96540 0.96853 0.93041 0.81852 0.92720 0.89563 0.83304 0.83468 0.81372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.41 37.16 0.35 -1.52 16 2 C 0.08 1.39 2.65 -67.72 -0.18 1.21 16 3 H 0.04 0.73 7.80 -51.93 -0.40 0.33 16 4 C -0.11 -2.36 4.74 -26.73 -0.13 -2.48 16 5 C 0.02 0.49 4.80 -27.88 -0.13 0.35 16 6 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 14 N -0.68 -11.49 6.30 -108.00 -0.68 -12.17 16 15 C 0.11 1.57 5.82 -4.98 -0.03 1.54 16 16 C 0.08 1.17 6.38 -82.41 -0.53 0.64 16 17 C -0.10 -1.10 9.85 -39.20 -0.39 -1.49 16 18 C -0.12 -1.15 10.21 -39.21 -0.40 -1.55 16 19 C 0.03 0.33 11.31 -17.37 -0.20 0.13 16 20 N -0.24 -3.86 11.50 30.55 0.35 -3.51 16 21 N -0.23 -4.06 11.43 33.59 0.38 -3.67 16 22 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 28 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.36 7.18 6.46 -39.29 -0.25 6.92 16 31 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.09 0.99 7.35 -51.93 -0.38 0.61 16 33 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 297.61 15.07 4.48 4.48 Total: -1.00 -33.00 297.61 -6.89 -39.89 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.10 Total: 1.55 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.04 Total: -16.89 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.79 Total: -46.13 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.00 -6.89 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.534 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds