Wall clock time and date at job start Sun Mar 29 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 C 1.50705 * 109.46952 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99927 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99897 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46884 * 59.99974 * 10 8 6 12 12 H 1.48498 * 109.47318 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47168 * 300.00164 * 10 8 6 14 14 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 15 15 C 1.46899 * 111.00029 * 85.00270 * 14 2 1 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 2 17 17 C 1.38387 * 120.00456 * 94.99907 * 16 15 14 18 18 N 1.32119 * 120.00247 * 179.97438 * 17 16 15 19 19 C 1.32158 * 119.99837 * 0.02562 * 18 17 16 20 20 C 1.38340 * 119.99793 * 359.97438 * 19 18 17 21 21 N 1.32131 * 120.00119 * 274.72218 * 16 15 14 22 22 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 23 23 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 24 24 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 26 26 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 27 27 H 1.08995 * 109.47413 * 299.99524 * 5 4 2 28 28 H 1.09004 * 109.46999 * 59.99995 * 5 4 2 29 29 H 0.97007 * 119.99656 * 180.02562 * 9 8 6 30 30 H 1.00908 * 110.99583 * 208.95182 * 14 2 1 31 31 H 1.09002 * 109.47043 * 299.99792 * 15 14 2 32 32 H 1.09001 * 109.47354 * 59.99854 * 15 14 2 33 33 H 1.08010 * 119.99402 * 359.95597 * 17 16 15 34 34 H 1.07998 * 119.99853 * 180.02562 * 19 18 17 35 35 H 1.08007 * 119.99444 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3234 2.5443 7 1 3.3686 -1.8040 3.2134 8 6 5.4183 -1.3595 2.8162 9 7 6.2688 -0.7748 2.0012 10 14 6.0410 -2.2402 4.3413 11 1 5.6487 -3.6713 4.2814 12 1 7.5209 -2.1354 4.4040 13 1 5.4483 -1.6148 5.5508 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5884 -0.5214 -3.5558 17 6 1.6920 -1.0644 -4.4595 18 7 2.1356 -1.7163 -5.5195 19 6 3.4356 -1.8502 -5.7167 20 6 4.3317 -1.3073 -4.8134 21 7 3.8881 -0.6505 -3.7559 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6054 -0.2619 2.1369 26 1 1.7516 -1.7717 1.2054 27 1 3.9994 -1.0729 0.4259 28 1 3.8531 0.4369 1.3573 29 1 7.2196 -0.8005 2.1923 30 1 2.9173 -1.1205 -1.0288 31 1 1.0870 0.6165 -2.5525 32 1 2.7588 1.0463 -2.1182 33 1 0.6296 -0.9556 -4.2979 34 1 3.7982 -2.3827 -6.5835 35 1 5.3940 -1.4163 -4.9748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:05 Heat of formation + Delta-G solvation = 30.684153 kcal Electronic energy + Delta-G solvation = -15992.809107 eV Core-core repulsion = 13411.260033 eV Total energy + Delta-G solvation = -2581.549074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03227 -37.28549 -34.43838 -33.43672 -32.46342 -30.37208 -29.08607 -26.12631 -24.89855 -24.51045 -22.28610 -21.32400 -19.57520 -17.59230 -16.98038 -16.49057 -15.89792 -15.42793 -14.89220 -14.51502 -14.33362 -13.74735 -13.13685 -12.70974 -12.55032 -12.33127 -12.10854 -11.65128 -11.51863 -11.46902 -11.15701 -11.08763 -10.87700 -10.50000 -10.33556 -9.76591 -9.32914 -9.25136 -9.06039 -9.00702 -8.34494 -8.07294 -5.98550 -4.01169 0.76483 1.15186 3.34195 3.38474 3.41062 3.65990 4.04205 4.25633 4.46899 4.48448 4.69315 4.84222 5.13024 5.25975 5.36864 5.44819 5.46902 5.66354 5.70798 5.84030 5.89769 6.14806 6.32636 6.34819 6.49129 6.51235 6.88925 7.07697 7.26915 7.39932 7.61926 7.77728 7.80646 7.84646 8.00406 8.43405 9.05355 9.62879 11.12446 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.005614 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.863606 B = 4986.770976 C = 5870.410199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.041 0.959 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.681 5.681 15 C 0.109 3.891 16 C 0.093 3.907 17 C 0.064 3.936 18 N -0.442 5.442 19 C 0.038 3.962 20 C 0.054 3.946 21 N -0.430 5.430 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.261 0.739 30 H 0.358 0.642 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 1.167 -12.971 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.059 0.941 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.317 5.317 15 C -0.021 4.021 16 C -0.048 4.048 17 C -0.096 4.096 18 N -0.157 5.157 19 C -0.122 4.122 20 C -0.106 4.106 21 N -0.145 5.145 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.180 0.820 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.320 0.961 -13.160 15.599 hybrid contribution 1.381 -0.012 0.999 1.705 sum -6.939 0.949 -12.160 14.033 Atomic orbital electron populations 1.21805 0.95560 1.01808 1.00308 1.21642 0.94557 0.96278 0.90210 0.94084 1.21834 0.99774 0.99434 0.94203 1.19127 0.88693 0.96930 0.96950 1.21189 0.91956 1.34441 1.08319 0.92741 1.25024 0.97086 0.95603 0.96677 1.69961 1.02399 1.44001 1.36981 0.86669 0.77589 0.80266 0.83540 1.20252 1.21315 1.20260 1.60707 1.35233 1.31720 1.04030 1.20795 1.00221 0.93518 0.87609 1.22295 0.89690 0.96037 0.96794 1.23567 1.01734 0.93884 0.90419 1.68437 1.16101 1.11928 1.19192 1.23722 0.89733 0.98474 1.00273 1.23800 1.02073 0.94116 0.90612 1.68359 1.15658 1.12075 1.18423 0.92850 0.93717 0.92307 0.92546 0.92473 0.96630 0.96902 0.92979 0.82015 0.89480 0.92966 0.81436 0.81589 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.41 37.16 0.35 -1.54 16 2 C 0.08 1.39 2.65 -67.71 -0.18 1.21 16 3 H 0.04 0.71 7.80 -51.93 -0.40 0.31 16 4 C -0.11 -2.35 4.74 -26.73 -0.13 -2.47 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.68 -11.41 6.30 -107.99 -0.68 -12.09 16 15 C 0.11 1.55 5.81 -4.98 -0.03 1.52 16 16 C 0.09 1.33 6.30 -82.41 -0.52 0.81 16 17 C 0.06 0.82 10.86 -17.37 -0.19 0.63 16 18 N -0.44 -5.71 10.50 -13.06 -0.14 -5.85 16 19 C 0.04 0.42 11.22 -17.37 -0.20 0.22 16 20 C 0.05 0.66 11.22 -17.38 -0.20 0.46 16 21 N -0.43 -6.64 10.42 -9.29 -0.10 -6.74 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.54 7.45 -51.92 -0.39 0.15 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.02 0.42 6.43 -51.93 -0.33 0.09 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.36 7.04 6.46 -39.29 -0.25 6.78 16 31 H 0.09 1.01 7.35 -51.93 -0.38 0.63 16 32 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -31.91 297.44 -7.45 -39.36 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.10 Total: 2.73 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.63 Total: -12.37 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.18 Total: -51.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.91 -7.45 -39.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.045 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds