Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 C 1.50705 * 109.46952 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99927 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99897 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46884 * 59.99974 * 10 8 6 12 12 H 1.48498 * 109.47318 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47168 * 300.00164 * 10 8 6 14 14 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 15 15 C 1.46899 * 111.00029 * 85.00270 * 14 2 1 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 2 17 17 C 1.38387 * 120.00456 * 94.99907 * 16 15 14 18 18 N 1.32119 * 120.00247 * 179.97438 * 17 16 15 19 19 C 1.32158 * 119.99837 * 0.02562 * 18 17 16 20 20 C 1.38340 * 119.99793 * 359.97438 * 19 18 17 21 21 N 1.32131 * 120.00119 * 274.72218 * 16 15 14 22 22 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 23 23 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 24 24 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 26 26 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 27 27 H 1.08995 * 109.47413 * 299.99524 * 5 4 2 28 28 H 1.09004 * 109.46999 * 59.99995 * 5 4 2 29 29 H 0.97007 * 119.99656 * 180.02562 * 9 8 6 30 30 H 1.00908 * 110.99583 * 208.95182 * 14 2 1 31 31 H 1.09002 * 109.47043 * 299.99792 * 15 14 2 32 32 H 1.09001 * 109.47354 * 59.99854 * 15 14 2 33 33 H 1.08010 * 119.99402 * 359.95597 * 17 16 15 34 34 H 1.07998 * 119.99853 * 180.02562 * 19 18 17 35 35 H 1.08007 * 119.99444 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3234 2.5443 7 1 3.3686 -1.8040 3.2134 8 6 5.4183 -1.3595 2.8162 9 7 6.2688 -0.7748 2.0012 10 14 6.0410 -2.2402 4.3413 11 1 5.6487 -3.6713 4.2814 12 1 7.5209 -2.1354 4.4040 13 1 5.4483 -1.6148 5.5508 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5884 -0.5214 -3.5558 17 6 1.6920 -1.0644 -4.4595 18 7 2.1356 -1.7163 -5.5195 19 6 3.4356 -1.8502 -5.7167 20 6 4.3317 -1.3073 -4.8134 21 7 3.8881 -0.6505 -3.7559 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6054 -0.2619 2.1369 26 1 1.7516 -1.7717 1.2054 27 1 3.9994 -1.0729 0.4259 28 1 3.8531 0.4369 1.3573 29 1 7.2196 -0.8005 2.1923 30 1 2.9173 -1.1205 -1.0288 31 1 1.0870 0.6165 -2.5525 32 1 2.7588 1.0463 -2.1182 33 1 0.6296 -0.9556 -4.2979 34 1 3.7982 -2.3827 -6.5835 35 1 5.3940 -1.4163 -4.9748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = 8.002540 kcal Electronic energy + Delta-G solvation = -15993.792656 eV Core-core repulsion = 13411.260033 eV Total energy + Delta-G solvation = -2582.532623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.00413 -38.67149 -35.69449 -35.07900 -33.91470 -31.87523 -30.51744 -27.40421 -26.64725 -25.48349 -23.55873 -22.95724 -21.09138 -18.65670 -18.49947 -17.86287 -17.10913 -16.74036 -16.55948 -16.06356 -15.49871 -14.91098 -14.45673 -14.26843 -14.20665 -13.72649 -13.32148 -13.11242 -13.01214 -12.81636 -12.56297 -12.48922 -12.36601 -12.19174 -11.89216 -11.60549 -11.33541 -10.96717 -10.55565 -10.24831 -10.02960 -9.40183 -8.20466 -6.31948 -0.17912 0.16786 1.38479 1.41631 1.49516 2.40049 2.67225 3.09526 3.12247 3.37644 3.45026 3.56131 3.85858 4.07112 4.19638 4.30985 4.42452 4.48919 4.60045 4.62823 4.71876 4.79145 5.01531 5.06096 5.09959 5.21962 5.43408 5.47378 5.53971 5.67832 5.83517 6.13466 6.23492 6.25943 6.35767 6.84732 6.84978 7.37376 8.90712 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.005614 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.863606 B = 4986.770976 C = 5870.410199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.086 3.914 3 H 0.033 0.967 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.545 4.545 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.266 1.266 14 N -0.680 5.680 15 C 0.113 3.887 16 C 0.072 3.928 17 C 0.066 3.934 18 N -0.458 5.458 19 C 0.049 3.951 20 C 0.044 3.956 21 N -0.473 5.473 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.054 0.946 27 H -0.007 1.007 28 H -0.017 1.017 29 H 0.263 0.737 30 H 0.336 0.664 31 H 0.119 0.881 32 H 0.032 0.968 33 H 0.192 0.808 34 H 0.206 0.794 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 0.420 -13.337 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.051 0.949 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.582 4.582 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.191 1.191 14 N -0.313 5.313 15 C -0.017 4.017 16 C -0.068 4.068 17 C -0.093 4.093 18 N -0.173 5.173 19 C -0.111 4.111 20 C -0.116 4.116 21 N -0.189 5.189 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.002 0.998 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.051 0.949 33 H 0.209 0.791 34 H 0.223 0.777 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.515 0.226 -13.524 16.537 hybrid contribution 1.796 0.217 1.028 2.081 sum -7.719 0.443 -12.496 14.695 Atomic orbital electron populations 1.21722 0.92330 1.02376 1.02078 1.21606 0.96918 0.95066 0.88741 0.94930 1.21657 0.95937 0.99877 0.96563 1.18992 0.92369 0.94392 0.95231 1.21670 0.92596 1.34697 1.09280 0.92237 1.25980 0.97358 0.96322 1.00099 1.70106 1.02735 1.45358 1.39041 0.85521 0.77004 0.79221 0.79429 1.19255 1.20861 1.19057 1.60813 1.33624 1.32267 1.04619 1.20861 1.01493 0.92484 0.86890 1.22290 0.89818 0.97362 0.97366 1.23862 1.02578 0.93039 0.89825 1.68534 1.17035 1.12382 1.19319 1.24335 0.88972 0.97080 1.00667 1.24292 1.03658 0.93633 0.90015 1.68285 1.16749 1.13610 1.20275 0.91755 0.91330 0.92287 0.92003 0.92751 0.98896 0.99845 0.92862 0.84506 0.86349 0.94929 0.79094 0.77715 0.79034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.41 71.98 0.68 -2.55 16 2 C 0.09 2.89 2.65 44.91 0.12 3.01 16 3 H 0.03 1.15 7.80 -2.39 -0.02 1.13 16 4 C -0.10 -4.25 4.74 30.59 0.15 -4.10 16 5 C 0.03 1.46 4.80 29.85 0.14 1.61 16 6 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 7 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 8 C 0.00 0.01 5.46 84.65 0.46 0.48 16 9 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 10 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 14 N -0.68 -22.97 6.30 -495.57 -3.12 -26.10 16 15 C 0.11 3.20 5.81 85.56 0.50 3.70 16 16 C 0.07 2.04 6.30 42.55 0.27 2.31 16 17 C 0.07 1.60 10.86 84.69 0.92 2.52 16 18 N -0.46 -10.99 10.50 -195.22 -2.05 -13.04 16 19 C 0.05 0.99 11.22 84.67 0.95 1.94 16 20 C 0.04 1.03 11.22 84.67 0.95 1.98 16 21 N -0.47 -14.85 10.42 -183.29 -1.91 -16.76 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 1.43 7.45 -2.38 -0.02 1.41 16 24 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 27 H -0.01 -0.41 6.43 -2.39 -0.02 -0.43 16 28 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 29 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 30 H 0.34 13.83 6.46 -89.69 -0.58 13.25 16 31 H 0.12 2.53 7.35 -2.39 -0.02 2.51 16 32 H 0.03 1.04 8.06 -2.39 -0.02 1.02 16 33 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -70.33 297.44 1.09 -69.25 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.49 Total: 17.73 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 5.37 Total: -20.47 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -6.80 Total: -113.52 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.33 1.09 -69.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.248 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds