Wall clock time and date at job start Sun Mar 29 2020 22:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99961 * 84.99970 * 13 12 11 15 15 C 1.54638 * 111.03581 * 267.02040 * 14 13 12 16 16 C 1.51102 * 104.72330 * 217.33455 * 15 14 13 17 17 C 1.30526 * 111.10840 * 16.43627 * 16 15 14 18 18 C 1.51105 * 111.10183 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47164 * 59.99836 * 12 11 10 20 20 C 1.52996 * 109.46946 * 299.99459 * 9 7 2 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 26 26 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 28 28 H 1.00893 * 111.00338 * 321.04590 * 13 12 11 29 29 H 1.09003 * 110.91222 * 31.02854 * 14 13 12 30 30 H 1.08997 * 110.39027 * 336.14745 * 15 14 13 31 31 H 1.09003 * 110.38431 * 98.52254 * 15 14 13 32 32 H 1.08002 * 124.44490 * 196.46171 * 16 15 14 33 33 H 1.07996 * 124.44939 * 180.02562 * 17 16 15 34 34 H 1.08996 * 110.38262 * 224.75445 * 18 17 16 35 35 H 1.08997 * 110.38822 * 102.36857 * 18 17 16 36 36 H 1.09002 * 109.47045 * 180.02562 * 19 12 11 37 37 H 1.09001 * 109.47375 * 59.99966 * 19 12 11 38 38 H 1.08992 * 109.47554 * 299.99877 * 20 9 7 39 39 H 1.09004 * 109.47108 * 60.00127 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 0.6011 -5.0678 1.2507 13 7 -0.1338 -6.3397 1.2510 14 6 0.6793 -7.4173 1.8305 15 6 1.4574 -8.1778 0.7316 16 6 1.4357 -9.6221 1.1752 17 6 0.5234 -9.8199 2.0876 18 6 -0.2158 -8.5405 2.4041 19 6 -0.3932 -3.9049 1.2507 20 6 0.3711 -2.5800 1.2495 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8905 25 1 0.8534 -5.0452 -0.8885 26 1 2.1886 -5.8156 0.0016 27 1 1.2280 -5.0098 2.1405 28 1 -0.4419 -6.5795 0.3207 29 1 1.3556 -7.0282 2.5916 30 1 0.9587 -8.0688 -0.2314 31 1 2.4833 -7.8142 0.6721 32 1 2.0894 -10.3898 0.7885 33 1 0.3233 -10.7727 2.5549 34 1 -0.3273 -8.4233 3.4820 35 1 -1.1912 -8.5353 1.9177 36 1 -1.0193 -3.9621 2.1411 37 1 -1.0201 -3.9629 0.3609 38 1 0.9974 -2.5221 2.1396 39 1 -0.3373 -1.7515 1.2491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:33 Heat of formation + Delta-G solvation = -6.482042 kcal Electronic energy + Delta-G solvation = -16886.721914 eV Core-core repulsion = 14407.101536 eV Total energy + Delta-G solvation = -2479.620378 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.25971 -37.43836 -34.04627 -31.98504 -29.79694 -28.84273 -28.09662 -26.44782 -23.99661 -21.53339 -20.75512 -20.45594 -18.76993 -18.61152 -16.39403 -16.18828 -15.52344 -14.79863 -14.37613 -13.34163 -13.14137 -13.10512 -12.72669 -12.58688 -12.25506 -12.18169 -11.91280 -11.48084 -11.38860 -11.26962 -11.00414 -10.96461 -10.61961 -10.43943 -10.33887 -10.14901 -9.74812 -9.34029 -8.95932 -8.85525 -8.68819 -8.24917 -7.99090 -5.93277 -3.99446 2.18061 3.32740 3.39610 3.42793 4.32243 4.47836 4.67543 4.75615 5.11257 5.24626 5.35605 5.42075 5.59097 5.60185 5.68062 5.76138 5.87141 5.94509 5.96738 6.09200 6.14704 6.38819 6.42860 6.45466 6.54557 6.66440 6.77349 6.81366 6.81823 6.94171 7.17891 7.32292 7.44693 7.58041 7.70039 7.80868 8.07964 8.23056 8.52911 9.04788 9.64976 11.12163 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.063773 B = 0.004893 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.953751 B = 5720.748904 C = 5980.786626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.105 4.105 11 C -0.143 4.143 12 C 0.091 3.909 13 N -0.678 5.678 14 C 0.085 3.915 15 C -0.129 4.129 16 C -0.169 4.169 17 C -0.167 4.167 18 C -0.092 4.092 19 C -0.102 4.102 20 C -0.109 4.109 21 H 0.259 0.741 22 H 0.023 0.977 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.339 0.661 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -15.658 2.854 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.182 4.182 12 C -0.018 4.018 13 N -0.306 5.306 14 C -0.026 4.026 15 C -0.168 4.168 16 C -0.187 4.187 17 C -0.186 4.186 18 C -0.130 4.130 19 C -0.140 4.140 20 C -0.148 4.148 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.037 -15.370 3.457 15.754 hybrid contribution 1.205 0.626 -0.798 1.575 sum 1.168 -14.743 2.659 15.027 Atomic orbital electron populations 1.69877 1.05817 1.26232 1.50980 1.24960 0.94821 0.98927 0.95264 0.86664 0.79920 0.83807 0.78008 1.20812 1.21277 1.20021 1.21246 0.92828 0.90876 1.50200 0.92928 1.18651 0.92589 0.91365 0.94363 1.21571 0.98594 0.94245 0.99894 1.22308 0.98858 0.98758 0.98314 1.21729 0.94183 0.88594 0.97282 1.60701 1.39972 1.02386 1.27565 1.22490 0.93196 0.91036 0.95838 1.22222 1.01559 0.93393 0.99644 1.23224 0.99298 0.97468 0.98703 1.23330 0.97627 0.98777 0.98834 1.21390 0.99192 0.91300 1.01137 1.21573 0.97212 0.94789 1.00472 1.21604 0.99586 0.95057 0.98507 0.93120 0.95850 0.93730 0.93566 0.92692 0.93757 0.91251 0.84248 0.89719 0.90672 0.91248 0.86384 0.86193 0.91231 0.90057 0.93369 0.93102 0.94994 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.01 16 10 C -0.10 -2.18 5.14 -26.73 -0.14 -2.31 16 11 C -0.14 -2.46 5.03 -26.73 -0.13 -2.60 16 12 C 0.09 1.53 2.47 -67.71 -0.17 1.37 16 13 N -0.68 -9.70 6.13 -97.93 -0.60 -10.30 16 14 C 0.09 1.07 3.44 -65.98 -0.23 0.85 16 15 C -0.13 -1.49 5.33 -26.82 -0.14 -1.63 16 16 C -0.17 -1.75 10.77 -35.70 -0.38 -2.13 16 17 C -0.17 -1.69 10.78 -35.70 -0.38 -2.07 16 18 C -0.09 -1.03 6.55 -26.81 -0.18 -1.21 16 19 C -0.10 -2.00 5.53 -26.76 -0.15 -2.15 16 20 C -0.11 -2.56 4.98 -26.76 -0.13 -2.70 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 26 H 0.04 0.68 6.38 -51.93 -0.33 0.35 16 27 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 28 H 0.34 4.63 7.81 -39.30 -0.31 4.33 16 29 H 0.08 1.13 7.45 -51.93 -0.39 0.74 16 30 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 31 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -27.64 299.85 -9.79 -37.43 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.70 Total: 3.30 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -2.62 Total: -26.44 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.03 Total: -35.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.64 -9.79 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.950 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds