Wall clock time and date at job start Sun Mar 29 2020 22:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99961 * 84.99970 * 13 12 11 15 15 C 1.54638 * 111.03581 * 267.02040 * 14 13 12 16 16 C 1.51102 * 104.72330 * 217.33455 * 15 14 13 17 17 C 1.30526 * 111.10840 * 16.43627 * 16 15 14 18 18 C 1.51105 * 111.10183 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47164 * 59.99836 * 12 11 10 20 20 C 1.52996 * 109.46946 * 299.99459 * 9 7 2 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 26 26 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 28 28 H 1.00893 * 111.00338 * 321.04590 * 13 12 11 29 29 H 1.09003 * 110.91222 * 31.02854 * 14 13 12 30 30 H 1.08997 * 110.39027 * 336.14745 * 15 14 13 31 31 H 1.09003 * 110.38431 * 98.52254 * 15 14 13 32 32 H 1.08002 * 124.44490 * 196.46171 * 16 15 14 33 33 H 1.07996 * 124.44939 * 180.02562 * 17 16 15 34 34 H 1.08996 * 110.38262 * 224.75445 * 18 17 16 35 35 H 1.08997 * 110.38822 * 102.36857 * 18 17 16 36 36 H 1.09002 * 109.47045 * 180.02562 * 19 12 11 37 37 H 1.09001 * 109.47375 * 59.99966 * 19 12 11 38 38 H 1.08992 * 109.47554 * 299.99877 * 20 9 7 39 39 H 1.09004 * 109.47108 * 60.00127 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 0.6011 -5.0678 1.2507 13 7 -0.1338 -6.3397 1.2510 14 6 0.6793 -7.4173 1.8305 15 6 1.4574 -8.1778 0.7316 16 6 1.4357 -9.6221 1.1752 17 6 0.5234 -9.8199 2.0876 18 6 -0.2158 -8.5405 2.4041 19 6 -0.3932 -3.9049 1.2507 20 6 0.3711 -2.5800 1.2495 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8905 25 1 0.8534 -5.0452 -0.8885 26 1 2.1886 -5.8156 0.0016 27 1 1.2280 -5.0098 2.1405 28 1 -0.4419 -6.5795 0.3207 29 1 1.3556 -7.0282 2.5916 30 1 0.9587 -8.0688 -0.2314 31 1 2.4833 -7.8142 0.6721 32 1 2.0894 -10.3898 0.7885 33 1 0.3233 -10.7727 2.5549 34 1 -0.3273 -8.4233 3.4820 35 1 -1.1912 -8.5353 1.9177 36 1 -1.0193 -3.9621 2.1411 37 1 -1.0201 -3.9629 0.3609 38 1 0.9974 -2.5221 2.1396 39 1 -0.3373 -1.7515 1.2491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:33 Heat of formation + Delta-G solvation = -21.289096 kcal Electronic energy + Delta-G solvation = -16887.363996 eV Core-core repulsion = 14407.101536 eV Total energy + Delta-G solvation = -2480.262460 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39388 -38.83374 -35.63768 -33.76347 -31.44867 -30.35888 -28.99194 -27.77269 -25.79593 -23.20101 -22.18249 -21.72308 -20.25105 -19.55791 -18.38250 -17.30497 -16.70733 -16.50812 -15.82998 -14.94766 -14.78834 -14.43712 -14.25041 -13.94693 -13.58278 -13.53062 -13.03691 -12.88457 -12.84111 -12.57925 -12.46948 -12.36909 -12.15540 -12.02870 -11.97533 -11.82423 -11.53043 -11.18195 -10.69797 -10.58545 -10.33720 -9.75054 -9.21230 -8.05910 -6.20206 1.40773 1.41462 1.41677 1.51732 2.44285 3.17717 3.22097 3.81016 3.82384 3.93464 4.15062 4.24194 4.39167 4.43814 4.59134 4.64946 4.73463 4.83913 4.86678 4.87712 4.91293 4.94641 5.03247 5.09424 5.13566 5.17521 5.22448 5.34655 5.42278 5.49331 5.64462 5.66337 5.72281 6.05037 6.05636 6.16613 6.29833 6.43430 6.54481 6.92882 7.47812 8.97812 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.063773 B = 0.004893 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.953751 B = 5720.748904 C = 5980.786626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.099 4.099 11 C -0.132 4.132 12 C 0.104 3.896 13 N -0.676 5.676 14 C 0.081 3.919 15 C -0.129 4.129 16 C -0.174 4.174 17 C -0.166 4.166 18 C -0.091 4.091 19 C -0.093 4.093 20 C -0.101 4.101 21 H 0.259 0.741 22 H -0.009 1.009 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.344 0.656 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.025 0.975 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -17.276 3.187 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.137 4.137 11 C -0.171 4.171 12 C -0.006 4.006 13 N -0.305 5.305 14 C -0.030 4.030 15 C -0.167 4.167 16 C -0.193 4.193 17 C -0.184 4.184 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.140 4.140 21 H 0.069 0.931 22 H 0.009 0.991 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.682 -17.007 3.789 17.437 hybrid contribution 0.961 1.134 -0.903 1.739 sum 1.643 -15.872 2.886 16.216 Atomic orbital electron populations 1.70022 1.07121 1.26966 1.51469 1.25731 0.95655 1.02289 0.94936 0.85668 0.78801 0.79690 0.78170 1.20231 1.20876 1.19357 1.21649 0.92963 0.92535 1.50358 0.93259 1.18625 0.93052 0.92238 0.93380 1.21443 0.97868 0.94611 0.99799 1.22212 0.99008 0.97417 0.98491 1.21446 0.93238 0.88900 0.96989 1.60606 1.39932 1.01896 1.28064 1.22542 0.93487 0.90839 0.96103 1.22172 1.01144 0.94228 0.99183 1.23337 0.99902 0.97077 0.98942 1.23466 0.97156 0.99017 0.98739 1.21364 0.98928 0.91372 1.01242 1.21412 0.97364 0.93953 1.00388 1.21391 0.98776 0.96219 0.97566 0.93139 0.99065 0.93885 0.93551 0.92767 0.91133 0.91407 0.83637 0.90345 0.90662 0.91434 0.84702 0.84177 0.90896 0.90275 0.92722 0.93836 0.95627 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.87 11.32 21.45 0.24 -53.62 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -30.22 8.56 25.60 0.22 -30.01 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.05 2.31 2.10 -11.54 -0.02 2.28 16 10 C -0.10 -4.08 5.14 30.59 0.16 -3.92 16 11 C -0.13 -4.36 5.03 30.60 0.15 -4.21 16 12 C 0.10 3.37 2.47 44.92 0.11 3.48 16 13 N -0.68 -18.14 6.13 -463.73 -2.84 -20.98 16 14 C 0.08 1.85 3.44 46.04 0.16 2.01 16 15 C -0.13 -2.63 5.33 30.53 0.16 -2.47 16 16 C -0.17 -3.10 10.77 26.26 0.28 -2.82 16 17 C -0.17 -2.85 10.78 26.26 0.28 -2.57 16 18 C -0.09 -1.82 6.55 30.54 0.20 -1.62 16 19 C -0.09 -3.63 5.53 30.58 0.17 -3.46 16 20 C -0.10 -4.86 4.98 30.58 0.15 -4.71 16 21 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 22 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 23 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 26 H 0.07 1.99 6.38 -2.39 -0.02 1.97 16 27 H 0.07 2.26 7.44 -2.39 -0.02 2.24 16 28 H 0.34 8.74 7.81 -89.70 -0.70 8.04 16 29 H 0.08 1.93 7.45 -2.39 -0.02 1.91 16 30 H 0.08 1.55 7.56 -2.39 -0.02 1.53 16 31 H 0.07 1.41 7.50 -2.39 -0.02 1.39 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 3.16 6.07 -2.38 -0.01 3.14 16 Total: -1.00 -59.65 299.85 2.21 -57.44 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.30 Total: 17.72 kcal Atomic # 6 Polarization: -49.34 SS G_CDS: 2.47 Total: -46.86 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.60 Total: -74.60 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -59.65 2.21 -57.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.154 kcal (2) G-P(sol) polarization free energy of solvation -59.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds