Wall clock time and date at job start Sun Mar 29 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35314 * 126.12792 * 2 1 4 4 C 1.39874 * 107.91749 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.89736 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.58176 * 350.94411 * 5 4 3 7 7 C 1.53188 * 109.58852 * 230.65855 * 5 4 3 8 8 C 1.53033 * 109.31228 * 185.57826 * 7 5 4 9 9 C 1.53037 * 109.54138 * 61.36603 * 8 7 5 10 10 C 1.53190 * 109.31230 * 298.63530 * 9 8 7 11 11 N 1.46922 * 109.58495 * 111.36876 * 5 4 3 12 12 C 1.36939 * 120.63069 * 353.40018 * 11 5 4 13 13 H 1.07994 * 120.00490 * 47.34040 * 12 11 5 14 14 C 1.38816 * 119.99879 * 227.33910 * 12 11 5 15 15 N 1.31620 * 120.00494 * 206.90255 * 14 12 11 16 16 Si 1.86806 * 119.99733 * 26.90376 * 14 12 11 17 17 H 1.48497 * 109.47388 * 84.75622 * 16 14 12 18 18 H 1.48508 * 109.46804 * 204.75318 * 16 14 12 19 19 H 1.48500 * 109.47059 * 324.75451 * 16 14 12 20 20 N 1.30836 * 108.20199 * 359.74472 * 4 3 2 21 21 N 1.34948 * 126.12460 * 179.97438 * 2 1 3 22 22 H 0.96999 * 126.03738 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.47259 * 269.99908 * 1 2 3 24 24 H 1.09004 * 109.47125 * 29.99119 * 1 2 3 25 25 H 1.08997 * 109.47683 * 149.99506 * 1 2 3 26 26 H 1.08003 * 126.04377 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.49818 * 305.53364 * 7 5 4 28 28 H 1.09008 * 109.49628 * 65.59393 * 7 5 4 29 29 H 1.09006 * 109.45809 * 181.38509 * 8 7 5 30 30 H 1.09001 * 109.46181 * 301.35292 * 8 7 5 31 31 H 1.09007 * 109.49624 * 58.58102 * 9 8 7 32 32 H 1.08999 * 109.50356 * 178.68027 * 9 8 7 33 33 H 1.09002 * 109.58798 * 174.42033 * 10 9 8 34 34 H 1.08992 * 109.58521 * 294.70023 * 10 9 8 35 35 H 0.96990 * 120.00125 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0006 5 6 4.8543 1.5393 0.0003 6 1 4.5558 2.5750 -0.1622 7 6 5.8070 1.0985 -1.1154 8 6 7.1033 1.9066 -1.0227 9 6 7.7790 1.6376 0.3238 10 6 6.8487 2.0845 1.4558 11 7 5.5487 1.4203 1.2896 12 6 4.9949 0.7040 2.3168 13 1 4.5949 -0.2823 2.1333 14 6 4.9475 1.2455 3.5941 15 7 4.9312 0.4529 4.6448 16 14 4.9067 3.0992 3.8217 17 1 3.5060 3.5804 3.7143 18 1 5.4477 3.4454 5.1607 19 1 5.7340 3.7452 2.7713 20 7 3.6333 -0.6525 0.0065 21 7 2.3026 -1.0900 0.0005 22 1 2.0054 -2.0134 0.0013 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9741 2.1211 -0.0004 27 1 6.0310 0.0374 -1.0045 28 1 5.3380 1.2719 -2.0840 29 1 7.7733 1.6121 -1.8305 30 1 6.8758 2.9691 -1.1089 31 1 7.9844 0.5715 0.4212 32 1 8.7139 2.1952 0.3796 33 1 7.2816 1.8053 2.4163 34 1 6.7169 3.1657 1.4150 35 1 4.8977 0.8313 5.5372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176484074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:14 Heat of formation + Delta-G solvation = 87.824218 kcal Electronic energy + Delta-G solvation = -17254.008942 eV Core-core repulsion = 14674.937647 eV Total energy + Delta-G solvation = -2579.071295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59420 -37.55494 -32.93420 -32.53875 -31.07315 -30.55974 -29.06167 -26.47260 -25.20356 -22.84565 -22.00244 -20.18982 -19.42577 -18.65877 -16.75430 -16.32385 -15.08029 -14.53771 -13.97766 -13.73738 -13.46916 -13.34458 -13.02515 -12.87358 -12.68564 -12.32047 -12.23786 -12.12901 -11.48596 -11.23149 -10.74474 -10.58489 -10.40579 -10.05471 -9.93037 -9.67585 -9.61217 -9.37293 -8.51014 -8.25071 -7.93515 -6.46823 -5.90410 -3.35468 2.51736 3.46800 3.48717 3.50791 3.56990 3.61749 4.68546 5.03719 5.21887 5.30127 5.40006 5.43802 5.60337 5.63832 5.64504 5.73627 5.92774 6.00466 6.24426 6.25128 6.34817 6.39890 6.51006 6.61397 6.62310 6.67020 6.78464 6.95651 6.99908 7.20261 7.34568 7.91550 8.21236 8.47769 8.66774 9.16838 9.84851 10.33087 11.25207 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.012155 C = 0.008716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.206786 B = 2302.979092 C = 3211.885089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.068 3.932 3 C -0.259 4.259 4 C 0.121 3.879 5 C 0.243 3.757 6 H 0.044 0.956 7 C -0.125 4.125 8 C -0.109 4.109 9 C -0.138 4.138 10 C 0.143 3.857 11 N -0.593 5.593 12 C -0.261 4.261 13 H 0.081 0.919 14 C 0.046 3.954 15 N -0.896 5.896 16 Si 0.851 3.149 17 H -0.289 1.289 18 H -0.300 1.300 19 H -0.255 1.255 20 N -0.268 5.268 21 N -0.485 5.485 22 H 0.429 0.571 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 1.647 -11.185 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.289 4.289 4 C -0.047 4.047 5 C 0.136 3.864 6 H 0.061 0.939 7 C -0.164 4.164 8 C -0.147 4.147 9 C -0.177 4.177 10 C 0.018 3.982 11 N -0.318 5.318 12 C -0.390 4.390 13 H 0.098 0.902 14 C -0.155 4.155 15 N -0.537 5.537 16 Si 0.679 3.321 17 H -0.216 1.216 18 H -0.227 1.227 19 H -0.180 1.180 20 N -0.090 5.090 21 N -0.193 5.193 22 H 0.271 0.729 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.155 0.845 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.633 0.587 -10.980 11.580 hybrid contribution -0.857 1.283 0.524 1.630 sum -4.490 1.870 -10.456 11.531 Atomic orbital electron populations 1.20354 0.88190 1.02967 1.02981 1.20876 0.93969 0.88214 1.02962 1.21035 0.92163 0.98528 1.17203 1.21987 0.94873 0.91322 0.96496 1.19050 0.86258 0.93179 0.87951 0.93862 1.21957 0.95929 1.00929 0.97626 1.21390 0.96627 0.99459 0.97183 1.22061 0.97952 1.01487 0.96219 1.21374 0.85375 0.94810 0.96644 1.44234 1.16622 1.61312 1.09626 1.18788 1.36616 0.97578 0.85992 0.90164 1.25745 0.97113 0.96904 0.95707 1.69966 1.50762 1.34968 0.97977 0.87291 0.78560 0.89399 0.76856 1.21578 1.22708 1.17978 1.77357 0.94640 1.13018 1.24023 1.46280 1.04691 1.07525 1.60764 0.72881 0.90584 0.90166 0.91774 0.84520 0.91299 0.93110 0.93272 0.92804 0.92017 0.93215 0.91630 0.95563 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.43 36.00 0.38 -0.60 16 2 C 0.07 1.12 7.21 -82.27 -0.59 0.53 16 3 C -0.26 -4.97 10.64 -40.01 -0.43 -5.39 16 4 C 0.12 2.60 4.55 -82.40 -0.38 2.23 16 5 C 0.24 5.18 3.38 -68.75 -0.23 4.95 16 6 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 7 C -0.12 -2.29 5.32 -26.62 -0.14 -2.43 16 8 C -0.11 -1.80 5.88 -26.70 -0.16 -1.96 16 9 C -0.14 -2.53 6.08 -26.61 -0.16 -2.69 16 10 C 0.14 3.17 4.53 -3.71 -0.02 3.15 16 11 N -0.59 -14.51 2.34 -166.09 -0.39 -14.90 16 12 C -0.26 -7.49 8.55 -15.06 -0.13 -7.62 16 13 H 0.08 2.56 6.63 -52.49 -0.35 2.21 16 14 C 0.05 1.37 5.05 -17.43 -0.09 1.28 16 15 N -0.90 -28.05 13.97 55.49 0.78 -27.27 16 16 Si 0.85 22.09 27.37 -169.99 -4.65 17.44 16 17 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 18 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 19 H -0.25 -6.20 4.86 56.52 0.27 -5.93 16 20 N -0.27 -5.83 11.36 33.67 0.38 -5.44 16 21 N -0.48 -8.51 7.36 33.47 0.25 -8.26 16 22 H 0.43 5.96 8.96 -182.61 -1.64 4.32 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 27 H 0.07 1.38 8.02 -51.93 -0.42 0.97 16 28 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.56 7.23 -51.93 -0.38 1.19 16 34 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 280.03 15.07 4.22 4.22 Total: -1.00 -33.50 280.03 -7.96 -41.47 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.60 Total: 1.31 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.94 Total: -8.55 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 1.02 Total: -55.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.65 Total: 17.44 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.50 -7.96 -41.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176484074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.291 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds