Wall clock time and date at job start Sun Mar 29 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35314 * 126.12792 * 2 1 4 4 C 1.39874 * 107.91749 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.89736 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.58176 * 350.94411 * 5 4 3 7 7 C 1.53188 * 109.58852 * 230.65855 * 5 4 3 8 8 C 1.53033 * 109.31228 * 185.57826 * 7 5 4 9 9 C 1.53037 * 109.54138 * 61.36603 * 8 7 5 10 10 C 1.53190 * 109.31230 * 298.63530 * 9 8 7 11 11 N 1.46922 * 109.58495 * 111.36876 * 5 4 3 12 12 C 1.36939 * 120.63069 * 353.40018 * 11 5 4 13 13 H 1.07994 * 120.00490 * 47.34040 * 12 11 5 14 14 C 1.38816 * 119.99879 * 227.33910 * 12 11 5 15 15 N 1.31620 * 120.00494 * 206.90255 * 14 12 11 16 16 Si 1.86806 * 119.99733 * 26.90376 * 14 12 11 17 17 H 1.48497 * 109.47388 * 84.75622 * 16 14 12 18 18 H 1.48508 * 109.46804 * 204.75318 * 16 14 12 19 19 H 1.48500 * 109.47059 * 324.75451 * 16 14 12 20 20 N 1.30836 * 108.20199 * 359.74472 * 4 3 2 21 21 N 1.34948 * 126.12460 * 179.97438 * 2 1 3 22 22 H 0.96999 * 126.03738 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.47259 * 269.99908 * 1 2 3 24 24 H 1.09004 * 109.47125 * 29.99119 * 1 2 3 25 25 H 1.08997 * 109.47683 * 149.99506 * 1 2 3 26 26 H 1.08003 * 126.04377 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.49818 * 305.53364 * 7 5 4 28 28 H 1.09008 * 109.49628 * 65.59393 * 7 5 4 29 29 H 1.09006 * 109.45809 * 181.38509 * 8 7 5 30 30 H 1.09001 * 109.46181 * 301.35292 * 8 7 5 31 31 H 1.09007 * 109.49624 * 58.58102 * 9 8 7 32 32 H 1.08999 * 109.50356 * 178.68027 * 9 8 7 33 33 H 1.09002 * 109.58798 * 174.42033 * 10 9 8 34 34 H 1.08992 * 109.58521 * 294.70023 * 10 9 8 35 35 H 0.96990 * 120.00125 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0006 5 6 4.8543 1.5393 0.0003 6 1 4.5558 2.5750 -0.1622 7 6 5.8070 1.0985 -1.1154 8 6 7.1033 1.9066 -1.0227 9 6 7.7790 1.6376 0.3238 10 6 6.8487 2.0845 1.4558 11 7 5.5487 1.4203 1.2896 12 6 4.9949 0.7040 2.3168 13 1 4.5949 -0.2823 2.1333 14 6 4.9475 1.2455 3.5941 15 7 4.9312 0.4529 4.6448 16 14 4.9067 3.0992 3.8217 17 1 3.5060 3.5804 3.7143 18 1 5.4477 3.4454 5.1607 19 1 5.7340 3.7452 2.7713 20 7 3.6333 -0.6525 0.0065 21 7 2.3026 -1.0900 0.0005 22 1 2.0054 -2.0134 0.0013 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.9741 2.1211 -0.0004 27 1 6.0310 0.0374 -1.0045 28 1 5.3380 1.2719 -2.0840 29 1 7.7733 1.6121 -1.8305 30 1 6.8758 2.9691 -1.1089 31 1 7.9844 0.5715 0.4212 32 1 8.7139 2.1952 0.3796 33 1 7.2816 1.8053 2.4163 34 1 6.7169 3.1657 1.4150 35 1 4.8977 0.8313 5.5372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176484074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:14 Heat of formation + Delta-G solvation = 64.970035 kcal Electronic energy + Delta-G solvation = -17254.999974 eV Core-core repulsion = 14674.937647 eV Total energy + Delta-G solvation = -2580.062327 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.04038 -39.19947 -34.87338 -34.00530 -32.61652 -32.29424 -30.57894 -27.70163 -27.11305 -24.42917 -23.84466 -21.60395 -20.89355 -20.39802 -18.34234 -18.08089 -16.99349 -16.17922 -15.55224 -15.31322 -15.05700 -14.80318 -14.54937 -14.43035 -14.23586 -14.03074 -13.42115 -13.35667 -13.18674 -12.71153 -12.68249 -12.37467 -12.16471 -11.67222 -11.50463 -11.43150 -11.21094 -11.04572 -10.49801 -9.99657 -9.35617 -8.44690 -8.15706 -5.57660 1.12433 1.39818 1.44761 1.55065 1.96036 2.18644 2.52078 3.11579 3.57489 3.82604 4.01081 4.13161 4.22557 4.25918 4.42592 4.49329 4.65837 4.77872 4.78695 4.86251 4.98487 5.06648 5.09586 5.12667 5.19589 5.27642 5.33943 5.36479 5.44824 5.68510 5.85841 6.04302 6.42625 6.65765 6.98865 7.11875 7.70087 8.21145 9.04431 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.012155 C = 0.008716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.206786 B = 2302.979092 C = 3211.885089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.085 3.915 3 C -0.295 4.295 4 C 0.098 3.902 5 C 0.234 3.766 6 H 0.057 0.943 7 C -0.116 4.116 8 C -0.103 4.103 9 C -0.131 4.131 10 C 0.137 3.863 11 N -0.605 5.605 12 C -0.241 4.241 13 H 0.037 0.963 14 C -0.011 4.011 15 N -0.949 5.949 16 Si 0.916 3.084 17 H -0.292 1.292 18 H -0.305 1.305 19 H -0.228 1.228 20 N -0.315 5.315 21 N -0.481 5.481 22 H 0.442 0.558 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 3.436 -13.234 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.324 4.324 4 C -0.069 4.069 5 C 0.128 3.872 6 H 0.074 0.926 7 C -0.156 4.156 8 C -0.141 4.141 9 C -0.170 4.170 10 C 0.012 3.988 11 N -0.331 5.331 12 C -0.371 4.371 13 H 0.055 0.945 14 C -0.208 4.208 15 N -0.593 5.593 16 Si 0.743 3.257 17 H -0.220 1.220 18 H -0.233 1.233 19 H -0.151 1.151 20 N -0.138 5.138 21 N -0.190 5.190 22 H 0.287 0.713 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.168 0.832 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.099 2.386 -13.078 13.911 hybrid contribution -0.763 0.594 1.093 1.459 sum -4.861 2.980 -11.985 13.272 Atomic orbital electron populations 1.20544 0.84070 1.05491 1.04011 1.21648 0.96262 0.86933 0.99567 1.21375 0.91755 1.00091 1.19198 1.22230 0.96019 0.91514 0.97114 1.19288 0.86934 0.93987 0.86990 0.92566 1.21855 0.96548 0.99608 0.97540 1.21394 0.95778 1.00164 0.96733 1.21960 0.98561 1.00603 0.95828 1.21443 0.85064 0.95141 0.97123 1.44343 1.17810 1.61105 1.09840 1.18526 1.35136 0.96284 0.87182 0.94542 1.26321 0.97914 1.01180 0.95361 1.70090 1.53887 1.36907 0.98398 0.86255 0.78495 0.83883 0.77110 1.21961 1.23275 1.15123 1.77240 0.97111 1.13659 1.25824 1.46323 1.03856 1.08765 1.60082 0.71290 0.90047 0.88025 0.88946 0.83158 0.93885 0.90761 0.90345 0.90998 0.93983 0.89998 0.94292 0.94331 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.43 71.24 0.74 -0.87 16 2 C 0.09 2.70 7.21 41.40 0.30 3.00 16 3 C -0.29 -11.04 10.64 21.99 0.23 -10.81 16 4 C 0.10 4.23 4.55 43.10 0.20 4.43 16 5 C 0.23 9.79 3.38 44.23 0.15 9.94 16 6 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 7 C -0.12 -4.06 5.32 30.67 0.16 -3.90 16 8 C -0.10 -3.05 5.88 30.62 0.18 -2.87 16 9 C -0.13 -4.49 6.08 30.67 0.19 -4.30 16 10 C 0.14 5.88 4.53 86.36 0.39 6.28 16 11 N -0.60 -29.56 2.34 -679.40 -1.59 -31.15 16 12 C -0.24 -14.23 8.55 84.03 0.72 -13.51 16 13 H 0.04 2.47 6.63 -2.91 -0.02 2.45 16 14 C -0.01 -0.67 5.05 84.86 0.43 -0.25 16 15 N -0.95 -61.63 13.97 21.65 0.30 -61.33 16 16 Si 0.92 46.23 27.37 68.60 1.88 48.11 16 17 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 18 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 19 H -0.23 -10.33 4.86 99.48 0.48 -9.85 16 20 N -0.32 -13.99 11.36 -47.38 -0.54 -14.53 16 21 N -0.48 -16.78 7.36 -48.01 -0.35 -17.13 16 22 H 0.44 12.12 8.96 -213.33 -1.91 10.21 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.15 5.00 8.06 -2.91 -0.02 4.97 16 27 H 0.04 1.71 8.02 -2.38 -0.02 1.70 16 28 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.85 7.23 -2.39 -0.02 1.83 16 34 H 0.04 1.57 6.46 -2.39 -0.02 1.56 16 35 H 0.26 15.98 8.31 -92.72 -0.77 15.20 16 Total: -1.00 -75.67 280.03 2.33 -73.33 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -1.05 Total: 15.57 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 3.69 Total: -12.87 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -2.18 Total: -124.14 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.11 kcal Total: -75.67 2.33 -73.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176484074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.304 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds