Wall clock time and date at job start Sun Mar 29 2020 22:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47202 * 2 1 4 4 C 1.46905 * 110.99773 * 61.16981 * 3 2 1 5 5 C 1.50699 * 109.46963 * 66.05097 * 4 3 2 6 6 H 1.08004 * 120.00247 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00167 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00161 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47435 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46863 * 120.00297 * 9 7 5 12 12 H 1.48503 * 109.46901 * 240.00029 * 9 7 5 13 13 C 1.46897 * 110.99972 * 297.22078 * 3 2 1 14 14 C 1.50696 * 109.47014 * 288.27830 * 13 3 2 15 15 C 1.38394 * 120.00307 * 95.43953 * 14 13 3 16 16 N 1.32127 * 119.99724 * 179.97438 * 15 14 13 17 17 C 1.32151 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.38342 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99591 * 179.97438 * 18 17 16 20 20 N 1.32124 * 120.00397 * 275.15711 * 14 13 3 21 21 H 1.08996 * 109.46981 * 179.79630 * 1 2 3 22 22 H 1.08999 * 109.47179 * 299.80278 * 1 2 3 23 23 H 1.09002 * 109.46993 * 59.80178 * 1 2 3 24 24 H 1.09004 * 109.47058 * 240.00210 * 2 1 3 25 25 H 1.09004 * 109.46776 * 119.99800 * 2 1 3 26 26 H 1.08991 * 109.47417 * 306.05030 * 4 3 2 27 27 H 1.09000 * 109.46663 * 186.04246 * 4 3 2 28 28 H 0.96990 * 120.00192 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.47212 * 48.27847 * 13 3 2 30 30 H 1.09004 * 109.47091 * 168.27692 * 13 3 2 31 31 H 1.08001 * 119.99659 * 359.94781 * 15 14 13 32 32 H 1.07997 * 119.99756 * 179.97438 * 17 16 15 33 33 H 1.09006 * 109.46671 * 90.00576 * 19 18 17 34 34 H 1.09004 * 109.47174 * 209.99698 * 19 18 17 35 35 H 1.08991 * 109.47616 * 330.00737 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5717 2.1017 1.2015 5 6 2.2175 1.4932 2.4195 6 1 2.8929 0.6573 2.3119 7 6 1.9462 2.0035 3.6713 8 7 1.1242 3.0217 3.8024 9 14 2.7463 1.2487 5.1811 10 1 3.6230 0.1241 4.7669 11 1 3.5585 2.2783 5.8779 12 1 1.6936 0.7441 6.0990 13 6 1.6038 2.0904 -1.2195 14 6 2.3851 1.5638 -2.3956 15 6 1.8476 0.5696 -3.1943 16 7 2.5325 0.1084 -4.2257 17 6 3.7305 0.5968 -4.4950 18 6 4.2679 1.5906 -3.6967 19 6 5.6343 2.1471 -4.0036 20 7 3.5810 2.0552 -2.6677 21 1 -0.3633 -1.0276 -0.0037 22 1 -0.3633 0.5108 0.8917 23 1 -0.3633 0.5169 -0.8882 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 0.4880 2.0242 1.2879 27 1 1.8561 3.1512 1.1256 28 1 0.9336 3.3809 4.6829 29 1 0.5392 1.9277 -1.3883 30 1 1.7945 3.1575 -1.1050 31 1 0.8685 0.1705 -2.9741 32 1 4.2905 0.2194 -5.3379 33 1 5.5372 2.9961 -4.6803 34 1 6.1103 2.4725 -3.0785 35 1 6.2437 1.3755 -4.4739 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203171539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:58 Heat of formation + Delta-G solvation = 47.294249 kcal Electronic energy + Delta-G solvation = -16462.134789 eV Core-core repulsion = 13881.305982 eV Total energy + Delta-G solvation = -2580.828806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.99145 -37.36519 -34.34516 -33.24251 -32.36304 -29.59848 -28.58887 -27.25256 -25.29193 -23.57252 -22.93039 -21.95186 -19.38254 -17.51682 -16.74810 -16.26313 -15.39520 -14.96538 -14.86867 -14.55923 -14.00881 -13.47665 -13.04824 -12.80524 -12.74305 -12.48448 -11.98129 -11.82195 -11.55963 -11.33534 -11.17288 -11.07934 -10.73586 -10.67300 -10.58284 -10.08979 -9.84735 -9.25691 -8.92180 -8.80855 -8.43532 -7.24750 -6.02992 -4.03553 0.91470 1.32829 3.31101 3.38721 3.43682 3.78641 4.12279 4.38916 4.43510 4.59618 4.86344 5.01768 5.24504 5.33665 5.40122 5.43253 5.50523 5.59532 5.71591 5.83047 5.92029 5.98883 6.10356 6.16468 6.36206 6.54553 6.64822 6.84634 7.27302 7.37171 7.46847 7.78444 7.99984 8.07627 8.16311 8.51452 9.03612 9.60330 11.07892 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.006003 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.866923 B = 4663.310622 C = 5055.968464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.525 5.525 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.095 3.905 14 C 0.118 3.882 15 C 0.040 3.960 16 N -0.438 5.438 17 C 0.030 3.970 18 C 0.080 3.920 19 C -0.100 4.100 20 N -0.422 5.422 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.002 0.998 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 -3.452 -14.536 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.249 5.249 4 C 0.066 3.934 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.034 4.034 14 C -0.023 4.023 15 C -0.120 4.120 16 N -0.151 5.151 17 C -0.130 4.130 18 C -0.061 4.061 19 C -0.158 4.158 20 N -0.139 5.139 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.314 -3.344 -14.387 15.138 hybrid contribution -0.539 -0.354 0.896 1.104 sum 2.775 -3.698 -13.491 14.261 Atomic orbital electron populations 1.22409 0.99126 1.01217 1.02157 1.22031 0.92295 0.91431 1.01382 1.62303 1.59331 1.01807 1.01424 1.19830 0.94426 0.93953 0.85191 1.21157 1.26563 1.16223 0.90247 0.91935 1.24962 0.95391 0.95145 0.99054 1.69959 1.35848 1.24562 1.23485 0.86463 0.79153 0.79191 0.82751 1.19724 1.21020 1.21133 1.20987 0.94729 0.99647 0.88035 1.22423 0.91323 0.92770 0.95791 1.23563 1.01020 0.95376 0.92078 1.68370 1.06480 1.24382 1.15896 1.23462 0.93225 0.95865 1.00473 1.22352 0.97750 0.94346 0.91664 1.20666 0.90637 1.01178 1.03273 1.68211 1.05767 1.25612 1.14277 0.93168 0.90920 0.93660 0.93442 0.89813 0.98025 0.95120 0.92994 0.92970 0.89298 0.81920 0.81999 0.90283 0.89961 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 9.28 37.16 0.34 -2.90 16 2 C 0.06 1.09 5.68 -3.82 -0.02 1.07 16 3 N -0.52 -11.22 4.65 -237.51 -1.10 -12.33 16 4 C 0.19 4.84 4.49 -4.97 -0.02 4.81 16 5 C -0.50 -13.99 8.50 -34.44 -0.29 -14.28 16 6 H 0.06 1.75 7.11 -52.48 -0.37 1.38 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.10 1.72 5.18 -4.98 -0.03 1.70 16 14 C 0.12 1.99 5.81 -82.41 -0.48 1.51 16 15 C 0.04 0.60 9.60 -17.37 -0.17 0.43 16 16 N -0.44 -6.44 10.50 -13.06 -0.14 -6.57 16 17 C 0.03 0.38 10.88 -17.38 -0.19 0.19 16 18 C 0.08 1.09 6.78 -82.42 -0.56 0.53 16 19 C -0.10 -0.97 10.19 36.00 0.37 -0.61 16 20 N -0.42 -7.24 10.35 -5.56 -0.06 -7.30 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.07 1.44 6.31 -51.93 -0.33 1.11 16 23 H 0.04 0.68 6.23 -51.93 -0.32 0.36 16 24 H 0.05 0.83 6.47 -51.93 -0.34 0.50 16 25 H 0.08 1.76 6.83 -51.93 -0.35 1.41 16 26 H 0.00 0.05 6.04 -51.93 -0.31 -0.26 16 27 H 0.03 0.84 7.86 -51.93 -0.41 0.44 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.05 0.85 5.78 -51.93 -0.30 0.55 16 30 H 0.09 1.67 7.81 -51.93 -0.41 1.27 16 31 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 288.87 15.07 4.35 4.35 Total: -1.00 -31.17 288.87 -7.18 -38.35 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.81 Total: -1.39 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.14 Total: -6.06 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.56 Total: -51.87 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.17 -7.18 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203171539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.645 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds