Wall clock time and date at job start Sun Mar 29 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47202 * 2 1 4 4 C 1.46905 * 110.99773 * 61.16981 * 3 2 1 5 5 C 1.50699 * 109.46963 * 66.05097 * 4 3 2 6 6 H 1.08004 * 120.00247 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00167 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00161 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47435 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46863 * 120.00297 * 9 7 5 12 12 H 1.48503 * 109.46901 * 240.00029 * 9 7 5 13 13 C 1.46897 * 110.99972 * 297.22078 * 3 2 1 14 14 C 1.50696 * 109.47014 * 288.27830 * 13 3 2 15 15 C 1.38394 * 120.00307 * 95.43953 * 14 13 3 16 16 N 1.32127 * 119.99724 * 179.97438 * 15 14 13 17 17 C 1.32151 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.38342 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99591 * 179.97438 * 18 17 16 20 20 N 1.32124 * 120.00397 * 275.15711 * 14 13 3 21 21 H 1.08996 * 109.46981 * 179.79630 * 1 2 3 22 22 H 1.08999 * 109.47179 * 299.80278 * 1 2 3 23 23 H 1.09002 * 109.46993 * 59.80178 * 1 2 3 24 24 H 1.09004 * 109.47058 * 240.00210 * 2 1 3 25 25 H 1.09004 * 109.46776 * 119.99800 * 2 1 3 26 26 H 1.08991 * 109.47417 * 306.05030 * 4 3 2 27 27 H 1.09000 * 109.46663 * 186.04246 * 4 3 2 28 28 H 0.96990 * 120.00192 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.47212 * 48.27847 * 13 3 2 30 30 H 1.09004 * 109.47091 * 168.27692 * 13 3 2 31 31 H 1.08001 * 119.99659 * 359.94781 * 15 14 13 32 32 H 1.07997 * 119.99756 * 179.97438 * 17 16 15 33 33 H 1.09006 * 109.46671 * 90.00576 * 19 18 17 34 34 H 1.09004 * 109.47174 * 209.99698 * 19 18 17 35 35 H 1.08991 * 109.47616 * 330.00737 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5717 2.1017 1.2015 5 6 2.2175 1.4932 2.4195 6 1 2.8929 0.6573 2.3119 7 6 1.9462 2.0035 3.6713 8 7 1.1242 3.0217 3.8024 9 14 2.7463 1.2487 5.1811 10 1 3.6230 0.1241 4.7669 11 1 3.5585 2.2783 5.8779 12 1 1.6936 0.7441 6.0990 13 6 1.6038 2.0904 -1.2195 14 6 2.3851 1.5638 -2.3956 15 6 1.8476 0.5696 -3.1943 16 7 2.5325 0.1084 -4.2257 17 6 3.7305 0.5968 -4.4950 18 6 4.2679 1.5906 -3.6967 19 6 5.6343 2.1471 -4.0036 20 7 3.5810 2.0552 -2.6677 21 1 -0.3633 -1.0276 -0.0037 22 1 -0.3633 0.5108 0.8917 23 1 -0.3633 0.5169 -0.8882 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 0.4880 2.0242 1.2879 27 1 1.8561 3.1512 1.1256 28 1 0.9336 3.3809 4.6829 29 1 0.5392 1.9277 -1.3883 30 1 1.7945 3.1575 -1.1050 31 1 0.8685 0.1705 -2.9741 32 1 4.2905 0.2194 -5.3379 33 1 5.5372 2.9961 -4.6803 34 1 6.1103 2.4725 -3.0785 35 1 6.2437 1.3755 -4.4739 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203171539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:57 Heat of formation + Delta-G solvation = 24.947875 kcal Electronic energy + Delta-G solvation = -16463.103800 eV Core-core repulsion = 13881.305982 eV Total energy + Delta-G solvation = -2581.797818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.12033 -38.97746 -35.45103 -34.94078 -33.93806 -31.14086 -29.99705 -28.62268 -26.87513 -25.12691 -24.31647 -23.27488 -21.00566 -18.66894 -18.38811 -17.78150 -16.96878 -16.64434 -16.14863 -16.05769 -15.55120 -14.75049 -14.48958 -14.24124 -13.71157 -13.65701 -13.29363 -13.26208 -13.14404 -12.84364 -12.73404 -12.58643 -12.46218 -12.44587 -11.96207 -11.88475 -11.55670 -11.27811 -10.60220 -10.01544 -9.96297 -8.94968 -8.19176 -6.27865 -0.18103 0.19732 1.39754 1.40999 1.53868 2.39981 2.65884 3.04724 3.13592 3.35660 3.41175 3.59383 3.84140 4.07326 4.21834 4.32153 4.35706 4.45242 4.50884 4.65333 4.72603 4.79679 4.90287 4.95474 5.00144 5.15598 5.21574 5.35570 5.49005 5.50857 5.66527 6.06068 6.33935 6.37329 6.60419 6.87040 6.90950 7.40920 8.91744 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.006003 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.866923 B = 4663.310622 C = 5055.968464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 N -0.539 5.539 4 C 0.207 3.793 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.276 1.276 13 C 0.101 3.899 14 C 0.097 3.903 15 C 0.040 3.960 16 N -0.449 5.449 17 C 0.042 3.958 18 C 0.072 3.928 19 C -0.097 4.097 20 N -0.461 5.461 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.059 0.941 26 H -0.012 1.012 27 H -0.002 1.002 28 H 0.264 0.736 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.180 0.820 32 H 0.206 0.794 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -4.981 -16.093 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 N -0.263 5.263 4 C 0.082 3.918 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.202 1.202 13 C -0.028 4.028 14 C -0.044 4.044 15 C -0.119 4.119 16 N -0.163 5.163 17 C -0.118 4.118 18 C -0.069 4.069 19 C -0.154 4.154 20 N -0.178 5.178 21 H 0.095 0.905 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.005 0.995 27 H 0.016 0.984 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.197 0.803 32 H 0.222 0.778 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.176 -4.884 -15.951 17.197 hybrid contribution -0.734 0.132 1.236 1.444 sum 3.442 -4.752 -14.715 15.841 Atomic orbital electron populations 1.22289 0.97384 1.02734 1.01474 1.21985 0.93732 0.89889 1.01109 1.62133 1.60123 1.02793 1.01253 1.19431 0.93237 0.92443 0.86719 1.21427 1.26550 1.16130 0.91528 0.92561 1.25819 0.95863 0.95514 1.02165 1.70073 1.37061 1.25796 1.24387 0.85402 0.78342 0.78424 0.78851 1.19150 1.20544 1.20193 1.20892 0.96153 0.98341 0.87388 1.22127 0.91835 0.94337 0.96063 1.23693 1.01678 0.94694 0.91852 1.68470 1.07368 1.24717 1.15718 1.24163 0.92535 0.94435 1.00704 1.23012 0.98851 0.94381 0.90688 1.20799 0.88702 1.02773 1.03164 1.68137 1.06428 1.26960 1.16243 0.90534 0.94229 0.91581 0.91370 0.92250 0.99460 0.98383 0.92722 0.91206 0.91210 0.80258 0.77760 0.88549 0.91484 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.01 9.28 71.98 0.67 -5.34 16 2 C 0.06 2.32 5.68 86.30 0.49 2.81 16 3 N -0.54 -23.66 4.65 -905.35 -4.21 -27.87 16 4 C 0.21 11.02 4.49 85.56 0.38 11.41 16 5 C -0.52 -29.63 8.50 25.60 0.22 -29.41 16 6 H 0.06 3.22 7.11 -2.91 -0.02 3.20 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 C 0.10 3.74 5.18 85.56 0.44 4.18 16 14 C 0.10 3.21 5.81 42.55 0.25 3.46 16 15 C 0.04 1.12 9.60 84.69 0.81 1.93 16 16 N -0.45 -11.98 10.50 -195.22 -2.05 -14.03 16 17 C 0.04 0.94 10.88 84.67 0.92 1.86 16 18 C 0.07 1.83 6.78 42.54 0.29 2.11 16 19 C -0.10 -1.63 10.19 71.24 0.73 -0.91 16 20 N -0.46 -15.61 10.35 -171.52 -1.77 -17.38 16 21 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.04 1.58 6.31 -2.39 -0.02 1.57 16 23 H 0.07 1.90 6.23 -2.39 -0.01 1.89 16 24 H 0.07 2.32 6.47 -2.39 -0.02 2.30 16 25 H 0.06 2.53 6.83 -2.38 -0.02 2.51 16 26 H -0.01 -0.67 6.04 -2.39 -0.01 -0.69 16 27 H 0.00 -0.11 7.86 -2.39 -0.02 -0.13 16 28 H 0.26 14.91 8.31 -92.72 -0.77 14.14 16 29 H 0.07 2.27 5.78 -2.38 -0.01 2.26 16 30 H 0.07 2.78 7.81 -2.38 -0.02 2.76 16 31 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.11 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -69.02 288.87 1.02 -68.01 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.08 Total: 7.40 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 5.66 Total: -7.18 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -7.75 Total: -115.09 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.02 1.02 -68.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203171539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.955 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds