Wall clock time and date at job start Sun Mar 29 2020 22:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47189 * 2 1 4 4 N 1.46895 * 109.46990 * 181.49456 * 3 2 1 5 5 C 1.46903 * 111.00324 * 60.90171 * 4 3 2 6 6 C 1.50699 * 109.47251 * 66.03720 * 5 4 3 7 7 H 1.08003 * 120.00081 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00164 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00051 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00076 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47207 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46999 * 120.00146 * 10 8 6 13 13 H 1.48506 * 109.46918 * 239.99655 * 10 8 6 14 14 C 1.46894 * 111.00501 * 296.94478 * 4 3 2 15 15 C 1.50703 * 109.46922 * 288.84754 * 14 4 3 16 16 N 1.31798 * 119.12230 * 275.15806 * 15 14 4 17 17 C 1.32330 * 120.82084 * 179.76129 * 16 15 14 18 18 C 1.38601 * 119.10072 * 0.50049 * 17 16 15 19 19 C 1.38595 * 118.40098 * 359.75639 * 18 17 16 20 20 N 1.31791 * 119.12787 * 95.42550 * 15 14 4 21 21 H 1.08997 * 109.46618 * 60.00358 * 1 2 3 22 22 H 1.08996 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47074 * 300.00210 * 1 2 3 24 24 H 1.09004 * 109.47489 * 240.00106 * 2 1 3 25 25 H 1.09005 * 109.47247 * 119.99623 * 2 1 3 26 26 H 1.09001 * 109.47245 * 61.49182 * 3 2 1 27 27 H 1.09004 * 109.46572 * 301.49430 * 3 2 1 28 28 H 1.08998 * 109.47501 * 186.04338 * 5 4 3 29 29 H 1.09002 * 109.46507 * 306.04754 * 5 4 3 30 30 H 0.96996 * 120.00246 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.47227 * 48.84198 * 14 4 3 32 32 H 1.08999 * 109.47551 * 168.84406 * 14 4 3 33 33 H 1.07994 * 120.45015 * 180.22954 * 17 16 15 34 34 H 1.08008 * 120.79848 * 179.77023 * 18 17 16 35 35 H 1.08000 * 120.44472 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5086 1.4427 -0.0361 5 6 4.0054 0.7862 -1.2528 6 6 3.6169 1.6026 -2.4585 7 1 3.0573 2.5178 -2.3334 8 6 3.9758 1.1812 -3.7212 9 7 4.6569 0.0664 -3.8736 10 14 3.4949 2.1935 -5.2156 11 1 2.7390 3.3943 -4.7777 12 1 4.7193 2.6174 -5.9413 13 1 2.6447 1.3738 -6.1160 14 6 4.0649 0.8107 1.1676 15 6 3.8455 1.7121 2.3552 16 7 4.7137 2.6730 2.6002 17 6 4.5514 3.4868 3.6310 18 6 3.4568 3.3110 4.4628 19 6 2.5686 2.2864 4.1759 20 7 2.7935 1.5153 3.1243 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6987 1.9486 0.9031 27 1 1.6549 1.9640 -0.8763 28 1 5.0912 0.7042 -1.2040 29 1 3.5690 -0.2095 -1.3324 30 1 4.9097 -0.2299 -4.7619 31 1 3.5679 -0.1440 1.3394 32 1 5.1333 0.6445 1.0300 33 1 5.2645 4.2745 3.8240 34 1 3.2996 3.9570 5.3140 35 1 1.7044 2.1200 4.8019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207015416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:06 Heat of formation + Delta-G solvation = 50.522049 kcal Electronic energy + Delta-G solvation = -16569.780876 eV Core-core repulsion = 13989.092037 eV Total energy + Delta-G solvation = -2580.688839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82301 -37.36083 -33.51377 -32.82644 -32.70656 -31.31368 -27.77913 -26.37332 -24.47216 -24.22546 -22.23512 -22.05317 -19.34321 -17.33462 -16.75791 -16.12693 -15.37656 -15.16172 -14.74308 -14.23531 -14.21285 -13.49819 -13.38113 -13.26449 -12.72258 -12.14897 -11.60172 -11.25150 -11.11122 -10.97932 -10.80773 -10.70859 -10.68385 -10.56515 -10.40725 -9.86772 -9.68381 -9.41813 -9.13461 -9.01320 -8.39378 -7.16001 -5.99013 -3.99185 1.04377 1.26262 3.33736 3.41111 3.46233 3.89656 4.18995 4.34791 4.47844 4.67367 5.05529 5.17621 5.19575 5.37374 5.55331 5.62435 5.63096 5.74813 5.94300 6.06266 6.11489 6.19706 6.44487 6.48325 6.55338 6.61129 6.80038 7.01889 7.18712 7.33337 7.44283 7.83003 8.10384 8.21304 8.36920 8.56247 9.07797 9.64278 11.11923 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.006648 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.095256 B = 4210.959951 C = 4702.615153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.161 4.161 3 C 0.068 3.932 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.111 3.889 15 C 0.345 3.655 16 N -0.500 5.500 17 C 0.145 3.855 18 C -0.245 4.245 19 C 0.143 3.857 20 N -0.515 5.515 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.003 0.997 30 H 0.260 0.740 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 3.329 15.106 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.199 4.199 3 C -0.060 4.060 4 N -0.250 5.250 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.212 1.212 14 C -0.019 4.019 15 C 0.078 3.922 16 N -0.213 5.213 17 C -0.021 4.021 18 C -0.267 4.267 19 C -0.024 4.024 20 N -0.230 5.230 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.181 0.819 34 H 0.159 0.841 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.873 3.105 14.150 14.996 hybrid contribution -0.640 0.354 0.014 0.731 sum -4.512 3.459 14.165 15.263 Atomic orbital electron populations 1.21614 0.96534 1.00575 1.01041 1.22123 0.95616 1.00079 1.02129 1.22037 0.88083 0.94901 1.00987 1.62290 1.06669 1.54639 1.01401 1.19828 0.95642 0.93084 0.84798 1.21149 1.34692 1.08078 0.90056 0.91962 1.24955 0.95394 0.95219 0.98983 1.69965 1.39124 1.22020 1.22760 0.86471 0.78196 0.80224 0.82712 1.19747 1.21046 1.21155 1.20858 1.01586 0.92600 0.86849 1.23422 0.84656 0.90595 0.93523 1.68347 1.30714 1.04583 1.17696 1.23262 0.94844 0.95442 0.88586 1.22825 0.98496 1.01997 1.03432 1.23175 0.97222 0.89515 0.92459 1.68346 1.20601 1.28665 1.05345 0.92944 0.93657 0.93549 0.90667 0.92596 0.93197 0.90308 0.95106 0.97956 0.93032 0.92363 0.88957 0.81920 0.84079 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.16 -3.00 5.30 -26.73 -0.14 -3.15 16 3 C 0.07 1.40 5.01 -3.82 -0.02 1.38 16 4 N -0.53 -11.76 4.65 -237.52 -1.11 -12.86 16 5 C 0.19 4.96 4.49 -4.97 -0.02 4.94 16 6 C -0.50 -14.13 8.50 -34.44 -0.29 -14.42 16 7 H 0.06 1.77 7.11 -52.48 -0.37 1.40 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.11 2.16 5.27 -4.98 -0.03 2.13 16 15 C 0.35 6.16 6.45 -157.19 -1.01 5.14 16 16 N -0.50 -8.59 10.33 -10.73 -0.11 -8.70 16 17 C 0.15 1.85 11.31 -17.20 -0.19 1.66 16 18 C -0.25 -2.59 10.17 -39.32 -0.40 -2.99 16 19 C 0.14 1.73 11.30 -17.21 -0.19 1.53 16 20 N -0.52 -8.23 9.63 -10.73 -0.10 -8.33 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.61 6.22 -51.93 -0.32 1.28 16 25 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 26 H 0.05 0.98 6.83 -51.93 -0.35 0.62 16 27 H 0.08 1.75 6.83 -51.93 -0.35 1.39 16 28 H 0.03 0.86 7.87 -51.93 -0.41 0.45 16 29 H 0.00 0.07 6.00 -51.93 -0.31 -0.24 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.06 1.09 5.94 -51.93 -0.31 0.78 16 32 H 0.09 1.80 7.83 -51.93 -0.41 1.39 16 33 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -31.63 289.80 -8.11 -39.74 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.84 Total: -0.99 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.03 Total: -4.14 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.58 Total: -55.83 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.63 -8.11 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207015416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.264 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds