Wall clock time and date at job start Sun Mar 29 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47189 * 2 1 4 4 N 1.46895 * 109.46990 * 181.49456 * 3 2 1 5 5 C 1.46903 * 111.00324 * 60.90171 * 4 3 2 6 6 C 1.50699 * 109.47251 * 66.03720 * 5 4 3 7 7 H 1.08003 * 120.00081 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00164 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00051 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00076 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47207 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46999 * 120.00146 * 10 8 6 13 13 H 1.48506 * 109.46918 * 239.99655 * 10 8 6 14 14 C 1.46894 * 111.00501 * 296.94478 * 4 3 2 15 15 C 1.50703 * 109.46922 * 288.84754 * 14 4 3 16 16 N 1.31798 * 119.12230 * 275.15806 * 15 14 4 17 17 C 1.32330 * 120.82084 * 179.76129 * 16 15 14 18 18 C 1.38601 * 119.10072 * 0.50049 * 17 16 15 19 19 C 1.38595 * 118.40098 * 359.75639 * 18 17 16 20 20 N 1.31791 * 119.12787 * 95.42550 * 15 14 4 21 21 H 1.08997 * 109.46618 * 60.00358 * 1 2 3 22 22 H 1.08996 * 109.46998 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47074 * 300.00210 * 1 2 3 24 24 H 1.09004 * 109.47489 * 240.00106 * 2 1 3 25 25 H 1.09005 * 109.47247 * 119.99623 * 2 1 3 26 26 H 1.09001 * 109.47245 * 61.49182 * 3 2 1 27 27 H 1.09004 * 109.46572 * 301.49430 * 3 2 1 28 28 H 1.08998 * 109.47501 * 186.04338 * 5 4 3 29 29 H 1.09002 * 109.46507 * 306.04754 * 5 4 3 30 30 H 0.96996 * 120.00246 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.47227 * 48.84198 * 14 4 3 32 32 H 1.08999 * 109.47551 * 168.84406 * 14 4 3 33 33 H 1.07994 * 120.45015 * 180.22954 * 17 16 15 34 34 H 1.08008 * 120.79848 * 179.77023 * 18 17 16 35 35 H 1.08000 * 120.44472 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5086 1.4427 -0.0361 5 6 4.0054 0.7862 -1.2528 6 6 3.6169 1.6026 -2.4585 7 1 3.0573 2.5178 -2.3334 8 6 3.9758 1.1812 -3.7212 9 7 4.6569 0.0664 -3.8736 10 14 3.4949 2.1935 -5.2156 11 1 2.7390 3.3943 -4.7777 12 1 4.7193 2.6174 -5.9413 13 1 2.6447 1.3738 -6.1160 14 6 4.0649 0.8107 1.1676 15 6 3.8455 1.7121 2.3552 16 7 4.7137 2.6730 2.6002 17 6 4.5514 3.4868 3.6310 18 6 3.4568 3.3110 4.4628 19 6 2.5686 2.2864 4.1759 20 7 2.7935 1.5153 3.1243 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6987 1.9486 0.9031 27 1 1.6549 1.9640 -0.8763 28 1 5.0912 0.7042 -1.2040 29 1 3.5690 -0.2095 -1.3324 30 1 4.9097 -0.2299 -4.7619 31 1 3.5679 -0.1440 1.3394 32 1 5.1333 0.6445 1.0300 33 1 5.2645 4.2745 3.8240 34 1 3.2996 3.9570 5.3140 35 1 1.7044 2.1200 4.8019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207015416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:05 Heat of formation + Delta-G solvation = 28.640108 kcal Electronic energy + Delta-G solvation = -16570.729748 eV Core-core repulsion = 13989.092037 eV Total energy + Delta-G solvation = -2581.637711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.92555 -39.04763 -34.88248 -34.59650 -34.04551 -32.77109 -29.57345 -27.98376 -26.09908 -25.33609 -23.86295 -23.49906 -21.02411 -18.46017 -18.42733 -17.64942 -17.03728 -16.54243 -16.10761 -15.99410 -15.59736 -14.96586 -14.84999 -14.33445 -14.22426 -13.96059 -13.31807 -12.96329 -12.73115 -12.64689 -12.60392 -12.38211 -12.26688 -11.94264 -11.77758 -11.61711 -11.33516 -11.24077 -10.59587 -10.40368 -10.10798 -8.95327 -8.18384 -6.27176 -0.00972 0.28194 1.40329 1.41239 1.54516 2.40529 2.74679 3.02698 3.14194 3.31109 3.57592 3.83950 4.10862 4.15785 4.18516 4.31096 4.43582 4.44373 4.51996 4.64614 4.71559 4.88254 4.95274 5.04577 5.11902 5.17059 5.30828 5.41900 5.49178 5.53710 5.67259 6.05353 6.17937 6.32842 6.57724 6.87000 7.25388 7.41261 8.92810 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.006648 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.095256 B = 4210.959951 C = 4702.615153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C 0.077 3.923 4 N -0.537 5.537 5 C 0.208 3.792 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.278 1.278 13 H -0.276 1.276 14 C 0.116 3.884 15 C 0.321 3.679 16 N -0.539 5.539 17 C 0.129 3.871 18 C -0.216 4.216 19 C 0.133 3.867 20 N -0.534 5.534 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.001 0.999 29 H -0.015 1.015 30 H 0.264 0.736 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.195 0.805 34 H 0.191 0.809 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 4.926 16.901 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.190 4.190 3 C -0.051 4.051 4 N -0.261 5.261 5 C 0.083 3.917 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.202 1.202 14 C -0.013 4.013 15 C 0.053 3.947 16 N -0.253 5.253 17 C -0.035 4.035 18 C -0.238 4.238 19 C -0.032 4.032 20 N -0.249 5.249 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.019 0.981 29 H 0.002 0.998 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.212 0.788 34 H 0.208 0.792 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.399 4.716 15.980 17.515 hybrid contribution -0.155 -0.088 -0.359 0.400 sum -5.554 4.628 15.622 17.213 Atomic orbital electron populations 1.21564 0.93809 1.01943 1.01745 1.21988 0.97945 0.98406 1.00671 1.21935 0.86855 0.95878 1.00396 1.62140 1.08008 1.54707 1.01229 1.19437 0.93602 0.92303 0.86391 1.21392 1.34803 1.08074 0.91255 0.92559 1.25832 0.95150 0.96309 1.02071 1.70083 1.39984 1.23535 1.23709 0.85384 0.78078 0.78721 0.78729 1.19111 1.20399 1.20198 1.20694 1.00443 0.93396 0.86787 1.22761 0.86428 0.91595 0.93937 1.68230 1.31459 1.05540 1.20104 1.23920 0.96498 0.95335 0.87791 1.23317 0.96160 1.00956 1.03325 1.23945 0.98636 0.89102 0.91553 1.68259 1.20043 1.29995 1.06610 0.93282 0.91994 0.91742 0.94030 0.92034 0.91862 0.92510 0.98110 0.99777 0.92700 0.92259 0.90456 0.78776 0.79218 0.78103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.91 71.98 0.71 -3.32 16 2 C -0.15 -5.75 5.30 30.60 0.16 -5.59 16 3 C 0.08 3.24 5.01 86.31 0.43 3.67 16 4 N -0.54 -25.08 4.65 -905.37 -4.21 -29.29 16 5 C 0.21 11.47 4.49 85.56 0.38 11.86 16 6 C -0.52 -30.19 8.50 25.60 0.22 -29.98 16 7 H 0.06 3.29 7.11 -2.91 -0.02 3.27 16 8 C 0.00 0.25 5.46 84.65 0.46 0.71 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 10 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.12 4.75 5.27 85.56 0.45 5.20 16 15 C 0.32 11.47 6.45 138.75 0.90 12.36 16 16 N -0.54 -18.34 10.33 -187.85 -1.94 -20.28 16 17 C 0.13 2.97 11.31 84.70 0.96 3.93 16 18 C -0.22 -3.63 10.17 22.44 0.23 -3.40 16 19 C 0.13 2.73 11.30 84.70 0.96 3.69 16 20 N -0.53 -16.28 9.63 -187.85 -1.81 -18.09 16 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.04 1.85 6.22 -2.39 -0.01 1.84 16 25 H 0.06 2.25 6.33 -2.38 -0.02 2.24 16 26 H 0.06 2.47 6.83 -2.39 -0.02 2.45 16 27 H 0.06 2.59 6.83 -2.38 -0.02 2.57 16 28 H 0.00 0.05 7.87 -2.39 -0.02 0.03 16 29 H -0.02 -0.89 6.00 -2.39 -0.01 -0.90 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.06 2.33 5.94 -2.39 -0.01 2.32 16 32 H 0.08 3.27 7.83 -2.39 -0.02 3.25 16 33 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -71.48 289.80 1.28 -70.20 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.07 Total: 7.50 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.86 Total: -0.87 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -7.68 Total: -124.25 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.48 1.28 -70.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207015416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.843 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds