Wall clock time and date at job start Sun Mar 29 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46794 * 2 1 4 4 C 1.53004 * 109.47255 * 176.76948 * 3 2 1 5 5 N 1.46496 * 109.47211 * 177.51439 * 4 3 2 6 6 C 1.36932 * 120.00245 * 95.50123 * 5 4 3 7 7 H 1.08007 * 119.99847 * 39.08923 * 6 5 4 8 8 C 1.38806 * 120.00645 * 218.82276 * 6 5 4 9 9 N 1.31617 * 120.00416 * 210.55156 * 8 6 5 10 10 Si 1.86803 * 119.99797 * 30.54528 * 8 6 5 11 11 H 1.48500 * 109.46866 * 94.58152 * 10 8 6 12 12 H 1.48501 * 109.47446 * 214.57932 * 10 8 6 13 13 H 1.48499 * 109.47197 * 334.58463 * 10 8 6 14 14 C 1.46500 * 120.00394 * 275.49916 * 5 4 3 15 15 C 1.50699 * 109.47166 * 275.92075 * 14 5 4 16 16 N 1.31796 * 119.12532 * 269.72409 * 15 14 5 17 17 C 1.32329 * 120.81829 * 179.75892 * 16 15 14 18 18 C 1.38597 * 119.10521 * 0.50968 * 17 16 15 19 19 C 1.38601 * 118.40080 * 359.74629 * 18 17 16 20 20 N 1.31801 * 119.12393 * 89.99666 * 15 14 5 21 21 H 1.09000 * 109.46946 * 299.99792 * 1 2 3 22 22 H 1.08996 * 109.47689 * 60.00071 * 1 2 3 23 23 H 1.09007 * 109.47092 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46946 * 240.00208 * 2 1 3 25 25 H 1.08998 * 109.47237 * 119.99660 * 2 1 3 26 26 H 1.08998 * 109.47454 * 56.76669 * 3 2 1 27 27 H 1.09004 * 109.47221 * 296.76953 * 3 2 1 28 28 H 1.09002 * 109.46885 * 57.51595 * 4 3 2 29 29 H 1.08999 * 109.46871 * 297.51935 * 4 3 2 30 30 H 0.97005 * 119.99994 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47085 * 35.91857 * 14 5 4 32 32 H 1.08995 * 109.47620 * 155.91618 * 14 5 4 33 33 H 1.08000 * 120.44631 * 180.24032 * 17 16 15 34 34 H 1.07999 * 120.79861 * 179.77559 * 18 17 16 35 35 H 1.07995 * 120.44888 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5678 1.4434 0.0813 5 7 4.0592 2.8222 0.0215 6 6 4.3332 3.5022 1.1780 7 1 4.7991 2.9910 2.0076 8 6 4.0173 4.8498 1.2824 9 7 4.7469 5.6400 2.0410 10 14 2.5566 5.5419 0.3460 11 1 1.3615 5.5481 1.2274 12 1 2.8590 6.9296 -0.0877 13 1 2.2880 4.6982 -0.8462 14 6 4.2576 3.4736 -1.2756 15 6 5.6106 3.0997 -1.8238 16 7 6.6514 3.8542 -1.5331 17 6 7.8556 3.5543 -1.9926 18 6 8.0111 2.4366 -2.7973 19 6 6.8923 1.6708 -3.0852 20 7 5.7207 2.0298 -2.5857 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6300 1.9728 0.8595 27 1 1.7246 1.9394 -0.9176 28 1 3.9764 0.8755 -0.7546 29 1 3.8819 0.9860 1.0195 30 1 4.5263 6.5818 2.1137 31 1 3.4820 3.1473 -1.9685 32 1 4.2021 4.5550 -1.1514 33 1 8.7050 4.1746 -1.7475 34 1 8.9807 2.1686 -3.1901 35 1 6.9757 0.7928 -3.7085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207016062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:27 Heat of formation + Delta-G solvation = 61.686746 kcal Electronic energy + Delta-G solvation = -16682.742163 eV Core-core repulsion = 14102.537462 eV Total energy + Delta-G solvation = -2580.204701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36837 -36.53917 -34.15188 -33.09841 -32.05193 -31.24654 -28.46518 -26.51913 -24.14219 -23.83690 -22.45938 -21.02238 -19.93607 -17.25417 -16.91849 -16.15459 -15.20600 -14.88369 -14.59891 -14.53548 -13.70529 -13.60550 -13.14481 -12.91903 -12.79445 -12.28874 -12.03753 -11.92146 -11.11496 -10.80104 -10.67070 -10.56759 -10.40686 -10.35510 -10.26964 -10.04935 -9.81761 -9.54862 -8.98658 -8.59791 -8.46315 -6.87009 -6.04880 -3.37674 1.41376 1.64605 3.38449 3.50586 3.53805 4.26587 4.55589 4.62384 4.75264 5.00034 5.11824 5.25719 5.37324 5.39414 5.55543 5.58405 5.59752 5.95098 5.99992 6.04490 6.15904 6.27541 6.34241 6.36082 6.43221 6.55511 6.58590 6.69367 6.93926 6.96945 7.10892 7.59105 8.01933 8.40349 8.79800 8.95849 9.70560 10.12118 11.10203 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.010861 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.050348 B = 2577.435713 C = 3825.867150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.148 3.852 5 N -0.583 5.583 6 C -0.278 4.278 7 H 0.073 0.927 8 C 0.055 3.945 9 N -0.873 5.873 10 Si 0.853 3.147 11 H -0.288 1.288 12 H -0.293 1.293 13 H -0.260 1.260 14 C 0.208 3.792 15 C 0.315 3.685 16 N -0.491 5.491 17 C 0.144 3.856 18 C -0.256 4.256 19 C 0.137 3.863 20 N -0.522 5.522 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -8.007 -9.079 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.023 3.977 5 N -0.303 5.303 6 C -0.406 4.406 7 H 0.091 0.909 8 C -0.149 4.149 9 N -0.511 5.511 10 Si 0.680 3.320 11 H -0.216 1.216 12 H -0.219 1.219 13 H -0.184 1.184 14 C 0.079 3.921 15 C 0.046 3.954 16 N -0.205 5.205 17 C -0.024 4.024 18 C -0.279 4.279 19 C -0.030 4.030 20 N -0.238 5.238 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.175 0.825 34 H 0.153 0.847 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.313 -7.566 -8.583 11.446 hybrid contribution 0.336 0.240 -0.742 0.849 sum 0.023 -7.326 -9.325 11.859 Atomic orbital electron populations 1.21770 0.96706 1.00617 1.01628 1.21485 0.95100 0.98075 1.01294 1.22177 0.99018 0.94909 1.01773 1.20997 0.91241 0.85997 0.99506 1.44024 1.73274 1.12039 1.00943 1.18606 1.36150 0.92981 0.92883 0.90938 1.25436 0.97079 0.96193 0.96147 1.70025 1.35513 1.04690 1.40884 0.87280 0.85785 0.78022 0.80942 1.21576 1.21940 1.18420 1.20311 0.86150 0.98077 0.87550 1.25155 0.98056 0.85657 0.86543 1.68496 0.99324 1.32151 1.20485 1.23257 0.95597 0.93397 0.90139 1.22710 1.01080 0.99648 1.04475 1.23088 0.88235 0.97300 0.94422 1.68377 1.26929 1.17189 1.11260 0.92913 0.93120 0.93520 0.92602 0.92423 0.91903 0.92954 0.93841 0.92997 0.92642 0.91952 0.90238 0.82457 0.84671 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.14 -2.55 5.54 -26.73 -0.15 -2.69 16 4 C 0.15 3.05 5.69 -4.04 -0.02 3.03 16 5 N -0.58 -14.10 2.01 -174.61 -0.35 -14.45 16 6 C -0.28 -7.78 9.78 -15.06 -0.15 -7.93 16 7 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 8 C 0.05 1.57 5.06 -17.43 -0.09 1.48 16 9 N -0.87 -26.44 13.97 55.49 0.78 -25.66 16 10 Si 0.85 21.49 26.30 -169.99 -4.47 17.02 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.26 -6.16 5.69 56.52 0.32 -5.83 16 14 C 0.21 4.79 4.25 -5.19 -0.02 4.76 16 15 C 0.31 6.85 7.22 -157.19 -1.13 5.71 16 16 N -0.49 -10.74 10.33 -10.72 -0.11 -10.85 16 17 C 0.14 2.43 11.30 -17.20 -0.19 2.23 16 18 C -0.26 -3.59 10.17 -39.31 -0.40 -3.99 16 19 C 0.14 2.07 11.31 -17.20 -0.19 1.87 16 20 N -0.52 -10.00 10.33 -10.73 -0.11 -10.11 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 28 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.05 1.08 8.00 -51.93 -0.42 0.67 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 32 H 0.08 1.97 4.61 -51.93 -0.24 1.73 16 33 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 295.16 15.07 4.45 4.45 Total: -1.00 -31.71 295.16 -7.31 -39.02 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.35 Total: -0.36 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.14 Total: 0.95 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.20 Total: -61.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.47 Total: 17.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.71 -7.31 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207016062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.710 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds