Wall clock time and date at job start Sun Mar 29 2020 22:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46794 * 2 1 4 4 C 1.53004 * 109.47255 * 176.76948 * 3 2 1 5 5 N 1.46496 * 109.47211 * 177.51439 * 4 3 2 6 6 C 1.36932 * 120.00245 * 95.50123 * 5 4 3 7 7 H 1.08007 * 119.99847 * 39.08923 * 6 5 4 8 8 C 1.38806 * 120.00645 * 218.82276 * 6 5 4 9 9 N 1.31617 * 120.00416 * 210.55156 * 8 6 5 10 10 Si 1.86803 * 119.99797 * 30.54528 * 8 6 5 11 11 H 1.48500 * 109.46866 * 94.58152 * 10 8 6 12 12 H 1.48501 * 109.47446 * 214.57932 * 10 8 6 13 13 H 1.48499 * 109.47197 * 334.58463 * 10 8 6 14 14 C 1.46500 * 120.00394 * 275.49916 * 5 4 3 15 15 C 1.50699 * 109.47166 * 275.92075 * 14 5 4 16 16 N 1.31796 * 119.12532 * 269.72409 * 15 14 5 17 17 C 1.32329 * 120.81829 * 179.75892 * 16 15 14 18 18 C 1.38597 * 119.10521 * 0.50968 * 17 16 15 19 19 C 1.38601 * 118.40080 * 359.74629 * 18 17 16 20 20 N 1.31801 * 119.12393 * 89.99666 * 15 14 5 21 21 H 1.09000 * 109.46946 * 299.99792 * 1 2 3 22 22 H 1.08996 * 109.47689 * 60.00071 * 1 2 3 23 23 H 1.09007 * 109.47092 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46946 * 240.00208 * 2 1 3 25 25 H 1.08998 * 109.47237 * 119.99660 * 2 1 3 26 26 H 1.08998 * 109.47454 * 56.76669 * 3 2 1 27 27 H 1.09004 * 109.47221 * 296.76953 * 3 2 1 28 28 H 1.09002 * 109.46885 * 57.51595 * 4 3 2 29 29 H 1.08999 * 109.46871 * 297.51935 * 4 3 2 30 30 H 0.97005 * 119.99994 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47085 * 35.91857 * 14 5 4 32 32 H 1.08995 * 109.47620 * 155.91618 * 14 5 4 33 33 H 1.08000 * 120.44631 * 180.24032 * 17 16 15 34 34 H 1.07999 * 120.79861 * 179.77559 * 18 17 16 35 35 H 1.07995 * 120.44888 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5678 1.4434 0.0813 5 7 4.0592 2.8222 0.0215 6 6 4.3332 3.5022 1.1780 7 1 4.7991 2.9910 2.0076 8 6 4.0173 4.8498 1.2824 9 7 4.7469 5.6400 2.0410 10 14 2.5566 5.5419 0.3460 11 1 1.3615 5.5481 1.2274 12 1 2.8590 6.9296 -0.0877 13 1 2.2880 4.6982 -0.8462 14 6 4.2576 3.4736 -1.2756 15 6 5.6106 3.0997 -1.8238 16 7 6.6514 3.8542 -1.5331 17 6 7.8556 3.5543 -1.9926 18 6 8.0111 2.4366 -2.7973 19 6 6.8923 1.6708 -3.0852 20 7 5.7207 2.0298 -2.5857 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6300 1.9728 0.8595 27 1 1.7246 1.9394 -0.9176 28 1 3.9764 0.8755 -0.7546 29 1 3.8819 0.9860 1.0195 30 1 4.5263 6.5818 2.1137 31 1 3.4820 3.1473 -1.9685 32 1 4.2021 4.5550 -1.1514 33 1 8.7050 4.1746 -1.7475 34 1 8.9807 2.1686 -3.1901 35 1 6.9757 0.7928 -3.7085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207016062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:26 Heat of formation + Delta-G solvation = 41.328472 kcal Electronic energy + Delta-G solvation = -16683.624964 eV Core-core repulsion = 14102.537462 eV Total energy + Delta-G solvation = -2581.087502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76569 -38.26127 -35.59398 -34.50329 -33.92080 -32.83605 -29.93587 -28.28990 -25.76471 -25.24769 -23.93528 -22.47525 -21.54745 -19.14009 -18.35933 -17.64563 -16.98783 -16.27336 -16.19168 -15.97511 -15.40000 -15.04392 -14.64810 -14.35023 -14.23270 -14.20019 -13.51380 -13.34233 -12.78615 -12.71341 -12.31781 -12.10957 -11.92263 -11.73157 -11.71254 -11.65033 -11.44500 -11.27640 -10.61471 -10.33395 -10.00741 -8.82819 -8.24492 -5.55719 0.07280 0.35514 1.35307 1.42820 1.51783 2.45007 2.75286 3.11465 3.25211 3.43294 3.50687 3.86400 4.16049 4.22700 4.31620 4.36049 4.41285 4.51271 4.56535 4.64620 4.79325 4.86016 4.98989 5.01990 5.06175 5.09014 5.19188 5.40844 5.49640 5.60435 5.61517 5.92204 6.17802 6.27637 6.94693 7.37708 7.60188 8.05683 8.95290 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.010861 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.050348 B = 2577.435713 C = 3825.867150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.131 4.131 4 C 0.150 3.850 5 N -0.595 5.595 6 C -0.268 4.268 7 H 0.030 0.970 8 C 0.006 3.994 9 N -0.924 5.924 10 Si 0.915 3.085 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.238 1.238 14 C 0.210 3.790 15 C 0.291 3.709 16 N -0.543 5.543 17 C 0.122 3.878 18 C -0.224 4.224 19 C 0.131 3.869 20 N -0.534 5.534 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.263 0.737 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.184 0.816 34 H 0.188 0.812 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 -10.004 -11.787 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.170 4.170 4 C 0.026 3.974 5 N -0.316 5.316 6 C -0.397 4.397 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.224 1.224 13 H -0.162 1.162 14 C 0.082 3.918 15 C 0.022 3.978 16 N -0.258 5.258 17 C -0.043 4.043 18 C -0.246 4.246 19 C -0.035 4.035 20 N -0.249 5.249 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.201 0.799 34 H 0.205 0.795 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.071 -9.600 -11.335 14.854 hybrid contribution 0.501 0.731 -0.016 0.886 sum 0.430 -8.869 -11.350 14.411 Atomic orbital electron populations 1.21748 0.95161 1.02081 1.01512 1.21435 0.96410 0.95359 1.02130 1.22050 0.96974 0.97359 1.00639 1.21049 0.92882 0.84217 0.99278 1.44044 1.74454 1.12832 1.00271 1.18356 1.34866 0.93000 0.93488 0.95274 1.25951 0.99095 0.96561 0.97713 1.70123 1.37450 1.04980 1.43982 0.86293 0.81993 0.77246 0.80410 1.21674 1.22356 1.16155 1.20080 0.88081 0.96534 0.87093 1.24520 0.97277 0.87233 0.88811 1.68364 1.01192 1.33829 1.22391 1.23838 0.94726 0.95192 0.90588 1.23225 1.03000 0.97015 1.01321 1.23958 0.87209 0.98493 0.93842 1.68313 1.29230 1.16172 1.11227 0.93504 0.92830 0.91272 0.91237 0.92115 0.94043 0.93097 0.92706 0.94198 0.92765 0.90541 0.92743 0.79940 0.79480 0.77924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.15 5.93 30.59 0.18 -2.97 16 3 C -0.13 -4.68 5.54 30.60 0.17 -4.52 16 4 C 0.15 6.20 5.69 86.38 0.49 6.69 16 5 N -0.59 -29.31 2.01 -706.36 -1.42 -30.73 16 6 C -0.27 -15.67 9.78 84.03 0.82 -14.85 16 7 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 8 C 0.01 0.37 5.06 84.86 0.43 0.80 16 9 N -0.92 -58.62 13.97 21.65 0.30 -58.32 16 10 Si 0.91 45.93 26.30 68.60 1.80 47.74 16 11 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 13 H -0.24 -10.97 5.69 99.48 0.57 -10.41 16 14 C 0.21 9.72 4.25 85.63 0.36 10.09 16 15 C 0.29 12.54 7.22 138.75 1.00 13.54 16 16 N -0.54 -23.73 10.33 -187.84 -1.94 -25.67 16 17 C 0.12 3.87 11.30 84.70 0.96 4.82 16 18 C -0.22 -5.27 10.17 22.44 0.23 -5.04 16 19 C 0.13 3.41 11.31 84.71 0.96 4.37 16 20 N -0.53 -19.25 10.33 -187.85 -1.94 -21.19 16 21 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.83 8.06 -2.38 -0.02 1.81 16 28 H 0.05 2.12 8.11 -2.39 -0.02 2.10 16 29 H 0.04 1.70 8.00 -2.39 -0.02 1.68 16 30 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 31 H 0.08 3.22 7.98 -2.39 -0.02 3.20 16 32 H 0.05 2.75 4.61 -2.39 -0.01 2.74 16 33 H 0.18 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -73.13 295.16 4.03 -69.10 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.91 Total: 8.91 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 6.32 Total: 10.15 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -5.00 Total: -135.90 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.80 Total: 47.74 kcal Total: -73.13 4.03 -69.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207016062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.429 kcal (2) G-P(sol) polarization free energy of solvation -73.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds