Wall clock time and date at job start Sun Mar 29 2020 21:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47186 * 2 1 4 4 N 1.31809 * 119.12396 * 269.97476 * 3 2 1 5 5 C 1.32313 * 120.81954 * 179.72922 * 4 3 2 6 6 C 1.38624 * 119.10338 * 0.57390 * 5 4 3 7 7 C 1.38574 * 118.39673 * 359.43958 * 6 5 4 8 8 C 1.50703 * 120.44930 * 180.30273 * 7 6 5 9 9 N 1.46900 * 109.47503 * 94.99855 * 8 7 6 10 10 C 1.46896 * 110.99916 * 293.95789 * 9 8 7 11 11 C 1.46899 * 111.00239 * 170.00057 * 9 8 7 12 12 C 1.50690 * 109.47130 * 190.00041 * 11 9 8 13 13 H 1.08001 * 120.00485 * 0.02562 * 12 11 9 14 14 C 1.37883 * 120.00074 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99635 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00233 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47283 * 89.99751 * 16 14 12 18 18 H 1.48492 * 109.47585 * 210.00043 * 16 14 12 19 19 H 1.48509 * 109.47145 * 330.00009 * 16 14 12 20 20 N 1.31789 * 119.12383 * 90.00339 * 3 2 1 21 21 H 1.09007 * 109.46861 * 59.99747 * 1 2 3 22 22 H 1.08992 * 109.47378 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46859 * 300.00271 * 1 2 3 24 24 H 1.08996 * 109.47018 * 239.99455 * 2 1 3 25 25 H 1.09003 * 109.46423 * 120.00087 * 2 1 3 26 26 H 1.07999 * 120.44989 * 180.31173 * 5 4 3 27 27 H 1.08002 * 120.80485 * 179.72100 * 6 5 4 28 28 H 1.08998 * 109.47459 * 215.00290 * 8 7 6 29 29 H 1.09007 * 109.46698 * 334.99716 * 8 7 6 30 30 H 1.09004 * 109.47746 * 59.99635 * 10 9 8 31 31 H 1.09003 * 109.47079 * 179.97438 * 10 9 8 32 32 H 1.09004 * 109.47565 * 299.99601 * 10 9 8 33 33 H 1.09001 * 109.47231 * 310.00649 * 11 9 8 34 34 H 1.09004 * 109.46626 * 70.00123 * 11 9 8 35 35 H 0.96993 * 119.99629 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2467 2.0254 -1.1514 5 6 2.6825 3.2741 -1.1906 6 6 2.9247 3.9414 0.0001 7 6 2.6876 3.2725 1.1904 8 6 2.9287 3.9561 2.5116 9 7 1.6710 4.5385 2.9985 10 6 1.2194 5.6256 2.1198 11 6 1.8085 5.0046 4.3847 12 6 0.4510 5.3660 4.9301 13 1 -0.4262 5.2596 4.3093 14 6 0.3289 5.8325 6.2219 15 7 1.3972 5.9626 6.9778 16 14 -1.3539 6.2798 6.8982 17 1 -1.9645 5.0857 7.5359 18 1 -1.2110 7.3607 7.9063 19 1 -2.2242 6.7486 5.7899 20 7 2.2462 2.0255 1.1513 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 2.8513 3.7655 -2.1374 27 1 3.2851 4.9595 0.0002 28 1 3.2964 3.2287 3.2353 29 1 3.6688 4.7459 2.3823 30 1 1.0585 5.2370 1.1141 31 1 0.2863 6.0386 2.5030 32 1 1.9781 6.4077 2.0899 33 1 2.2454 4.2125 4.9928 34 1 2.4557 5.8814 4.4106 35 1 1.3113 6.2904 7.8866 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207083274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:17 Heat of formation + Delta-G solvation = 22.111700 kcal Electronic energy + Delta-G solvation = -16207.317622 eV Core-core repulsion = 13625.396818 eV Total energy + Delta-G solvation = -2581.920804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.08885 -38.49804 -35.45226 -34.95686 -34.30850 -31.77999 -29.58312 -28.69345 -26.30363 -25.88901 -24.05855 -22.70230 -21.84843 -18.64101 -18.57480 -17.30932 -16.82641 -16.38853 -16.28172 -15.85403 -15.49276 -15.16668 -14.90826 -14.56819 -14.04574 -13.70592 -13.34206 -13.24956 -12.96510 -12.71727 -12.64392 -12.57462 -12.37276 -11.99399 -11.94823 -11.68865 -11.63434 -11.34097 -10.63252 -10.37145 -10.16712 -9.09044 -8.22026 -6.31899 -0.08103 0.13752 1.40632 1.42350 1.53047 2.38994 2.69086 2.94650 3.10828 3.13956 3.37537 3.65310 3.95453 4.15256 4.26071 4.28994 4.38041 4.40087 4.46510 4.59212 4.68685 4.75600 4.84872 4.99256 5.00009 5.13104 5.14319 5.25335 5.28904 5.50438 5.61586 6.00148 6.10940 6.24854 6.52430 6.82537 7.18535 7.37407 8.89070 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.005528 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.487530 B = 5064.326748 C = 5482.770476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.303 3.697 4 N -0.535 5.535 5 C 0.151 3.849 6 C -0.225 4.225 7 C 0.181 3.819 8 C 0.100 3.900 9 N -0.544 5.544 10 C 0.041 3.959 11 C 0.210 3.790 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.265 1.265 20 N -0.532 5.532 21 H 0.054 0.946 22 H 0.090 0.910 23 H 0.037 0.963 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.209 0.791 27 H 0.169 0.831 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.004 0.996 34 H -0.026 1.026 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -6.012 -16.444 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C 0.036 3.964 4 N -0.250 5.250 5 C -0.014 4.014 6 C -0.247 4.247 7 C 0.035 3.965 8 C -0.028 4.028 9 N -0.269 5.269 10 C -0.107 4.107 11 C 0.084 3.916 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.189 1.189 20 N -0.247 5.247 21 H 0.073 0.927 22 H 0.109 0.891 23 H 0.056 0.944 24 H 0.124 0.876 25 H 0.107 0.893 26 H 0.225 0.775 27 H 0.187 0.813 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.023 0.977 34 H -0.009 1.009 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.613 -7.249 -16.261 17.877 hybrid contribution 0.367 1.881 0.956 2.142 sum 1.980 -5.368 -15.305 16.339 Atomic orbital electron populations 1.21636 0.93154 1.03496 1.01222 1.20435 0.97090 0.86906 1.04762 1.23754 0.91144 0.98302 0.83203 1.68291 1.14905 1.11689 1.30104 1.23853 0.88772 0.89115 0.99686 1.23020 1.04411 1.03838 0.93448 1.21643 0.89420 0.89609 0.95875 1.20963 0.91980 0.97725 0.92159 1.61930 1.28128 1.33247 1.03619 1.22231 1.00344 0.92168 0.95949 1.19396 0.96056 0.92401 0.83700 1.21413 0.93797 1.42872 0.98245 0.92254 1.25874 1.00952 0.95481 0.97092 1.70072 1.30649 1.47463 1.09080 0.85391 0.79152 0.77963 0.78156 1.20057 1.20471 1.18944 1.68077 1.13797 1.11369 1.31496 0.92731 0.89077 0.94412 0.87582 0.89260 0.77462 0.81328 0.90765 0.91800 0.91633 0.92404 0.95464 0.97747 1.00858 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.89 71.98 0.71 -2.25 16 2 C -0.05 -1.22 6.37 29.85 0.19 -1.03 16 3 C 0.30 8.97 6.90 138.75 0.96 9.93 16 4 N -0.54 -14.28 10.33 -187.84 -1.94 -16.22 16 5 C 0.15 3.30 11.31 84.71 0.96 4.26 16 6 C -0.23 -5.53 8.53 22.44 0.19 -5.34 16 7 C 0.18 5.92 5.66 42.56 0.24 6.16 16 8 C 0.10 3.70 5.33 85.56 0.46 4.16 16 9 N -0.54 -24.17 4.74 -931.65 -4.42 -28.59 16 10 C 0.04 1.58 9.04 127.69 1.15 2.73 16 11 C 0.21 11.30 4.72 85.55 0.40 11.70 16 12 C -0.53 -30.12 8.46 25.60 0.22 -29.91 16 13 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 14 C 0.00 0.25 5.46 84.66 0.46 0.71 16 15 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 16 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 N -0.53 -18.61 10.27 -176.03 -1.81 -20.42 16 21 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.21 2.56 8.06 -2.91 -0.02 2.54 16 27 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 28 H 0.07 2.94 7.93 -2.39 -0.02 2.92 16 29 H 0.06 2.09 8.04 -2.38 -0.02 2.07 16 30 H 0.07 2.17 6.42 -2.38 -0.02 2.16 16 31 H 0.06 2.43 6.76 -2.39 -0.02 2.41 16 32 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.00 0.26 7.93 -2.39 -0.02 0.24 16 34 H -0.03 -1.48 8.12 -2.38 -0.02 -1.50 16 35 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -68.83 296.77 1.14 -67.69 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.06 Total: 5.60 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.94 Total: 1.12 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -7.88 Total: -121.00 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.83 1.14 -67.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207083274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.802 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds