Wall clock time and date at job start Sun Mar 29 2020 22:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46886 * 2 1 4 4 C 1.53003 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46920 * 180.02562 * 4 3 2 6 6 C 1.36934 * 119.99989 * 90.00032 * 5 4 3 7 7 H 1.07999 * 120.00287 * 40.96260 * 6 5 4 8 8 C 1.38813 * 119.99880 * 221.23522 * 6 5 4 9 9 N 1.31614 * 120.00352 * 211.72114 * 8 6 5 10 10 Si 1.86805 * 119.99769 * 31.71633 * 8 6 5 11 11 H 1.48501 * 109.46913 * 93.84950 * 10 8 6 12 12 H 1.48499 * 109.46959 * 213.84450 * 10 8 6 13 13 H 1.48494 * 109.47327 * 333.84540 * 10 8 6 14 14 C 1.46502 * 119.99632 * 269.99945 * 5 4 3 15 15 C 1.50703 * 109.47101 * 271.42272 * 14 5 4 16 16 C 1.38383 * 120.00343 * 93.50594 * 15 14 5 17 17 N 1.32126 * 120.00279 * 179.97438 * 16 15 14 18 18 C 1.32157 * 119.99485 * 359.97438 * 17 16 15 19 19 C 1.38338 * 120.00512 * 0.02562 * 18 17 16 20 20 N 1.32125 * 119.99969 * 273.23484 * 15 14 5 21 21 H 1.08995 * 109.46854 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47035 * 300.00288 * 1 2 3 23 23 H 1.09003 * 109.46707 * 59.99886 * 1 2 3 24 24 H 1.08996 * 109.47047 * 240.00267 * 2 1 3 25 25 H 1.09000 * 109.47168 * 119.99515 * 2 1 3 26 26 H 1.08996 * 109.47059 * 60.00274 * 3 2 1 27 27 H 1.08994 * 109.47254 * 299.99655 * 3 2 1 28 28 H 1.08995 * 109.47035 * 59.99712 * 4 3 2 29 29 H 1.09000 * 109.47168 * 299.99515 * 4 3 2 30 30 H 0.97001 * 119.99991 * 359.97438 * 9 8 6 31 31 H 1.08996 * 109.47626 * 31.42105 * 14 5 4 32 32 H 1.09003 * 109.46982 * 151.42319 * 14 5 4 33 33 H 1.08002 * 119.99865 * 359.95608 * 16 15 14 34 34 H 1.08004 * 119.99632 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.99977 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2870 3.4687 1.1861 7 1 4.7516 2.9417 2.0065 8 6 3.9166 4.7980 1.3361 9 7 4.6161 5.5919 2.1189 10 14 2.4252 5.4603 0.4269 11 1 1.2307 5.3718 1.3047 12 1 2.6619 6.8782 0.0546 13 1 2.1975 4.6574 -0.8014 14 6 4.3019 3.5151 -1.2685 15 6 5.7144 3.2500 -1.7219 16 6 5.9783 2.2033 -2.5879 17 7 7.2166 1.9711 -2.9858 18 6 8.2032 2.7389 -2.5572 19 6 7.9395 3.7852 -1.6915 20 7 6.7003 4.0201 -1.2969 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9330 0.9289 -0.8908 29 1 3.9337 0.9287 0.8891 30 1 5.3904 5.2479 2.5913 31 1 3.6040 3.1494 -2.0216 32 1 4.1595 4.5871 -1.1313 33 1 5.1719 1.5760 -2.9382 34 1 9.2154 2.5494 -2.8828 35 1 8.7459 4.4123 -1.3410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209787346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:21 Heat of formation + Delta-G solvation = 53.392621 kcal Electronic energy + Delta-G solvation = -16680.331103 eV Core-core repulsion = 14099.766742 eV Total energy + Delta-G solvation = -2580.564361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45936 -36.63385 -34.34602 -33.50283 -32.00209 -31.02331 -28.36911 -26.27000 -24.11987 -23.70479 -22.48921 -20.98829 -19.87827 -17.58126 -16.98874 -16.46237 -15.43887 -15.17347 -14.58087 -14.24060 -13.84607 -13.77248 -13.35678 -13.04010 -12.51584 -12.24379 -12.10173 -11.72069 -11.14475 -10.94314 -10.77752 -10.75411 -10.60108 -10.52576 -10.35148 -9.95425 -9.78272 -9.41840 -8.72650 -8.52711 -8.30801 -7.04112 -6.28358 -3.42677 1.28315 1.69937 3.46718 3.51318 3.67102 4.19525 4.57879 4.60076 4.80727 4.99863 5.09143 5.24613 5.30426 5.33123 5.52824 5.56219 5.70159 5.82706 5.86792 5.93439 6.09904 6.17836 6.22959 6.27125 6.30696 6.46901 6.51949 6.67896 6.87303 6.89288 7.03607 7.80544 8.17671 8.41496 8.49662 8.98906 9.59137 10.19195 10.99455 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.010346 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.357762 B = 2705.818588 C = 3865.993734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.147 3.853 5 N -0.583 5.583 6 C -0.364 4.364 7 H 0.053 0.947 8 C 0.019 3.981 9 N -0.884 5.884 10 Si 1.037 2.963 11 H -0.294 1.294 12 H -0.292 1.292 13 H -0.277 1.277 14 C 0.190 3.810 15 C 0.087 3.913 16 C 0.037 3.963 17 N -0.446 5.446 18 C 0.013 3.987 19 C 0.050 3.950 20 N -0.413 5.413 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.269 0.731 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 -7.178 -8.321 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.179 4.179 4 C 0.021 3.979 5 N -0.303 5.303 6 C -0.492 4.492 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.519 5.519 10 Si 0.866 3.134 11 H -0.222 1.222 12 H -0.219 1.219 13 H -0.203 1.203 14 C 0.063 3.937 15 C -0.057 4.057 16 C -0.125 4.125 17 N -0.161 5.161 18 C -0.146 4.146 19 C -0.110 4.110 20 N -0.129 5.129 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.829 -5.806 -8.505 10.459 hybrid contribution 1.119 -1.428 0.394 1.856 sum -0.710 -7.233 -8.111 10.891 Atomic orbital electron populations 1.21769 0.96610 1.00665 1.01705 1.21503 0.95220 0.98119 1.01209 1.22198 0.98850 0.94816 1.02065 1.20998 0.91490 0.86707 0.98707 1.44046 1.73370 1.11395 1.01467 1.19757 1.40587 0.97081 0.91781 0.92922 1.26278 1.00732 0.93114 0.98706 1.70873 1.16553 1.35171 1.29255 0.84160 0.77277 0.75461 0.76515 1.22207 1.21896 1.20264 1.20343 0.85966 0.98797 0.88641 1.23876 0.99756 0.91579 0.90456 1.23492 0.94511 0.97650 0.96818 1.68292 1.00353 1.25794 1.21627 1.23479 0.99129 0.94129 0.97901 1.23793 0.95584 0.96661 0.94987 1.68539 0.99302 1.26699 1.18321 0.93513 0.92852 0.93053 0.92724 0.92476 0.91626 0.92901 0.94765 0.93523 0.92093 0.92250 0.90899 0.82451 0.82504 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.42 5.54 -26.73 -0.15 -2.57 16 4 C 0.15 2.85 5.68 -4.04 -0.02 2.83 16 5 N -0.58 -13.46 1.96 -174.61 -0.34 -13.80 16 6 C -0.36 -9.94 9.62 -15.06 -0.14 -10.09 16 7 H 0.05 1.60 8.06 -52.49 -0.42 1.18 16 8 C 0.02 0.53 5.05 -17.43 -0.09 0.44 16 9 N -0.88 -26.75 13.71 55.49 0.76 -25.99 16 10 Si 1.04 25.14 26.76 -169.99 -4.55 20.59 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.07 5.93 56.52 0.33 -5.73 16 14 C 0.19 4.06 4.36 -5.19 -0.02 4.03 16 15 C 0.09 1.77 6.37 -82.41 -0.52 1.25 16 16 C 0.04 0.65 10.87 -17.37 -0.19 0.46 16 17 N -0.45 -7.72 10.50 -13.06 -0.14 -7.85 16 18 C 0.01 0.21 11.22 -17.37 -0.20 0.01 16 19 C 0.05 0.86 11.22 -17.37 -0.20 0.67 16 20 N -0.41 -8.89 10.42 -9.29 -0.10 -8.98 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.59 8.07 -51.93 -0.42 0.18 16 29 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 30 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 31 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16 32 H 0.07 1.71 4.77 -51.93 -0.25 1.47 16 33 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 296.09 15.07 4.46 4.46 Total: -1.00 -31.10 296.09 -6.59 -37.69 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.37 Total: 0.21 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.32 Total: -6.31 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.19 Total: -56.63 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.55 Total: 20.59 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.10 -6.59 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209787346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.080 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds