Wall clock time and date at job start Sun Mar 29 2020 22:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46886 * 2 1 4 4 C 1.53003 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46920 * 180.02562 * 4 3 2 6 6 C 1.36934 * 119.99989 * 90.00032 * 5 4 3 7 7 H 1.07999 * 120.00287 * 40.96260 * 6 5 4 8 8 C 1.38813 * 119.99880 * 221.23522 * 6 5 4 9 9 N 1.31614 * 120.00352 * 211.72114 * 8 6 5 10 10 Si 1.86805 * 119.99769 * 31.71633 * 8 6 5 11 11 H 1.48501 * 109.46913 * 93.84950 * 10 8 6 12 12 H 1.48499 * 109.46959 * 213.84450 * 10 8 6 13 13 H 1.48494 * 109.47327 * 333.84540 * 10 8 6 14 14 C 1.46502 * 119.99632 * 269.99945 * 5 4 3 15 15 C 1.50703 * 109.47101 * 271.42272 * 14 5 4 16 16 C 1.38383 * 120.00343 * 93.50594 * 15 14 5 17 17 N 1.32126 * 120.00279 * 179.97438 * 16 15 14 18 18 C 1.32157 * 119.99485 * 359.97438 * 17 16 15 19 19 C 1.38338 * 120.00512 * 0.02562 * 18 17 16 20 20 N 1.32125 * 119.99969 * 273.23484 * 15 14 5 21 21 H 1.08995 * 109.46854 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47035 * 300.00288 * 1 2 3 23 23 H 1.09003 * 109.46707 * 59.99886 * 1 2 3 24 24 H 1.08996 * 109.47047 * 240.00267 * 2 1 3 25 25 H 1.09000 * 109.47168 * 119.99515 * 2 1 3 26 26 H 1.08996 * 109.47059 * 60.00274 * 3 2 1 27 27 H 1.08994 * 109.47254 * 299.99655 * 3 2 1 28 28 H 1.08995 * 109.47035 * 59.99712 * 4 3 2 29 29 H 1.09000 * 109.47168 * 299.99515 * 4 3 2 30 30 H 0.97001 * 119.99991 * 359.97438 * 9 8 6 31 31 H 1.08996 * 109.47626 * 31.42105 * 14 5 4 32 32 H 1.09003 * 109.46982 * 151.42319 * 14 5 4 33 33 H 1.08002 * 119.99865 * 359.95608 * 16 15 14 34 34 H 1.08004 * 119.99632 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.99977 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2870 3.4687 1.1861 7 1 4.7516 2.9417 2.0065 8 6 3.9166 4.7980 1.3361 9 7 4.6161 5.5919 2.1189 10 14 2.4252 5.4603 0.4269 11 1 1.2307 5.3718 1.3047 12 1 2.6619 6.8782 0.0546 13 1 2.1975 4.6574 -0.8014 14 6 4.3019 3.5151 -1.2685 15 6 5.7144 3.2500 -1.7219 16 6 5.9783 2.2033 -2.5879 17 7 7.2166 1.9711 -2.9858 18 6 8.2032 2.7389 -2.5572 19 6 7.9395 3.7852 -1.6915 20 7 6.7003 4.0201 -1.2969 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9330 0.9289 -0.8908 29 1 3.9337 0.9287 0.8891 30 1 5.3904 5.2479 2.5913 31 1 3.6040 3.1494 -2.0216 32 1 4.1595 4.5871 -1.1313 33 1 5.1719 1.5760 -2.9382 34 1 9.2154 2.5494 -2.8828 35 1 8.7459 4.4123 -1.3410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209787346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:20 Heat of formation + Delta-G solvation = 32.876934 kcal Electronic energy + Delta-G solvation = -16681.220730 eV Core-core repulsion = 14099.766742 eV Total energy + Delta-G solvation = -2581.453988 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.86037 -38.28095 -35.69693 -34.97910 -33.89445 -32.53368 -29.77160 -27.93227 -25.57662 -25.29263 -23.95856 -22.35805 -21.47298 -19.58695 -18.42354 -17.75513 -16.93277 -16.71272 -16.06819 -15.85587 -15.40631 -15.38780 -14.87173 -14.35414 -14.10995 -13.65986 -13.36675 -13.31271 -12.73646 -12.45128 -12.29202 -12.12062 -12.09974 -11.92151 -11.74631 -11.63197 -11.40985 -11.27271 -10.48206 -10.11849 -9.89537 -9.04748 -8.39115 -5.58433 -0.06583 0.30214 1.50266 1.55857 1.75339 2.58816 2.76173 3.12103 3.33742 3.47766 3.52519 3.70270 4.03217 4.17380 4.26773 4.28982 4.43580 4.53278 4.55418 4.63149 4.72297 4.84196 4.91639 5.03309 5.08363 5.09886 5.20811 5.42540 5.52849 5.54051 5.63087 5.92776 6.35988 6.46561 6.94664 7.03336 7.62618 8.13762 8.78547 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.010346 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.357762 B = 2705.818588 C = 3865.993734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.132 4.132 4 C 0.146 3.854 5 N -0.596 5.596 6 C -0.346 4.346 7 H 0.004 0.996 8 C -0.031 4.031 9 N -0.926 5.926 10 Si 1.079 2.921 11 H -0.291 1.291 12 H -0.301 1.301 13 H -0.239 1.239 14 C 0.189 3.811 15 C 0.061 3.939 16 C 0.046 3.954 17 N -0.455 5.455 18 C 0.036 3.964 19 C 0.038 3.962 20 N -0.465 5.465 21 H 0.066 0.934 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.250 0.750 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.188 0.812 34 H 0.204 0.796 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -8.996 -11.311 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.171 4.171 4 C 0.021 3.979 5 N -0.317 5.317 6 C -0.475 4.475 7 H 0.022 0.978 8 C -0.230 4.230 9 N -0.564 5.564 10 Si 0.903 3.097 11 H -0.218 1.218 12 H -0.228 1.228 13 H -0.162 1.162 14 C 0.062 3.938 15 C -0.081 4.081 16 C -0.114 4.114 17 N -0.170 5.170 18 C -0.124 4.124 19 C -0.122 4.122 20 N -0.181 5.181 21 H 0.085 0.915 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.205 0.795 34 H 0.221 0.779 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.244 -7.677 -11.531 14.033 hybrid contribution 1.463 -0.964 1.252 2.153 sum -0.781 -8.640 -10.279 13.451 Atomic orbital electron populations 1.21753 0.95249 1.01971 1.01625 1.21456 0.96377 0.95634 1.02026 1.22075 0.96953 0.97094 1.01022 1.21088 0.93006 0.84721 0.99071 1.44067 1.74588 1.12389 1.00692 1.19414 1.38596 0.96848 0.92665 0.97824 1.27366 1.02460 0.93903 0.99312 1.71012 1.17409 1.35867 1.32071 0.83645 0.74031 0.74923 0.77093 1.21798 1.22816 1.16203 1.20322 0.87891 0.97225 0.88390 1.23677 0.98923 0.92994 0.92522 1.23792 0.95614 0.96532 0.95464 1.68447 1.00493 1.26164 1.21865 1.24190 1.00699 0.92072 0.95468 1.24298 0.94806 0.97838 0.95259 1.68409 1.01296 1.28504 1.19896 0.91540 0.93775 0.92353 0.90746 0.92840 0.94507 0.92041 0.91866 0.95597 0.94139 0.88562 0.93538 0.79541 0.77930 0.79858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.12 -2.93 5.93 30.60 0.18 -2.75 16 3 C -0.13 -4.32 5.54 30.60 0.17 -4.15 16 4 C 0.15 5.49 5.68 86.38 0.49 5.98 16 5 N -0.60 -27.39 1.96 -706.33 -1.38 -28.77 16 6 C -0.35 -19.66 9.62 84.03 0.81 -18.86 16 7 H 0.00 0.26 8.06 -2.91 -0.02 0.24 16 8 C -0.03 -1.79 5.05 84.86 0.43 -1.36 16 9 N -0.93 -59.04 13.71 21.65 0.30 -58.75 16 10 Si 1.08 51.60 26.76 68.60 1.84 53.43 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 13 H -0.24 -9.76 5.93 99.48 0.59 -9.17 16 14 C 0.19 7.77 4.36 85.63 0.37 8.14 16 15 C 0.06 2.41 6.37 42.55 0.27 2.68 16 16 C 0.05 1.48 10.87 84.68 0.92 2.40 16 17 N -0.45 -14.06 10.50 -195.23 -2.05 -16.11 16 18 C 0.04 0.97 11.22 84.67 0.95 1.93 16 19 C 0.04 1.24 11.22 84.67 0.95 2.19 16 20 N -0.46 -19.80 10.42 -183.30 -1.91 -21.71 16 21 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 29 H 0.03 1.06 8.04 -2.39 -0.02 1.04 16 30 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 31 H 0.10 3.17 8.00 -2.39 -0.02 3.15 16 32 H 0.05 2.16 4.77 -2.39 -0.01 2.15 16 33 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 34 H 0.20 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.18 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -71.65 296.09 3.94 -67.70 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.90 Total: 10.53 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 6.26 Total: -6.33 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -5.05 Total: -125.34 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 1.84 Total: 53.43 kcal Total: -71.65 3.94 -67.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209787346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.581 kcal (2) G-P(sol) polarization free energy of solvation -71.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds