Wall clock time and date at job start Sun Mar 29 2020 22:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47069 * 2 1 4 4 O 1.42901 * 109.47207 * 119.99683 * 2 1 3 5 5 C 1.42895 * 113.99948 * 270.00124 * 4 2 1 6 6 C 1.53006 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47188 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00218 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31505 * 119.99945 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47309 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47178 * 119.99393 * 13 11 9 16 16 H 1.48498 * 109.47163 * 239.99655 * 13 11 9 17 17 C 1.50696 * 109.46718 * 239.99543 * 2 1 3 18 18 C 1.38314 * 125.74384 * 114.69432 * 17 2 1 19 19 C 1.47157 * 108.14503 * 179.84769 * 18 17 2 20 20 C 1.35503 * 107.60000 * 0.41678 * 19 18 17 21 21 C 1.38308 * 125.75156 * 295.00214 * 17 2 1 22 22 H 1.08002 * 125.92908 * 0.02562 * 21 17 2 23 23 H 1.09004 * 109.46875 * 300.00243 * 1 2 3 24 24 H 1.09000 * 109.47032 * 60.00021 * 1 2 3 25 25 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47626 * 60.00343 * 5 4 2 27 27 H 1.09001 * 109.47255 * 300.00084 * 5 4 2 28 28 H 1.09001 * 109.47002 * 299.99477 * 6 5 4 29 29 H 1.08993 * 109.46955 * 59.99914 * 6 5 4 30 30 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 31 31 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 32 32 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 33 33 H 1.08992 * 109.47534 * 59.99520 * 8 7 6 34 34 H 0.97007 * 119.99787 * 180.02562 * 12 11 9 35 35 H 1.08008 * 125.93178 * 359.97438 * 18 17 2 36 36 H 1.07993 * 126.20138 * 180.16801 * 19 18 17 37 37 H 1.07999 * 126.19754 * 179.75667 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2940 6 6 2.7092 -0.6405 3.4789 7 6 2.9172 0.2768 4.6856 8 6 3.4268 -0.5465 5.8702 9 6 3.6311 0.3568 7.0589 10 1 3.4191 1.4127 6.9776 11 6 4.0898 -0.1645 8.2502 12 7 4.3484 -1.4500 8.3491 13 14 4.3437 0.9554 9.7235 14 1 3.9837 2.3482 9.3546 15 1 3.4821 0.5015 10.8446 16 1 5.7675 0.9071 10.1425 17 6 2.0323 -0.7105 -1.2304 18 6 2.7437 -0.1300 -2.2648 19 6 3.0391 -1.1732 -3.2598 20 6 2.4992 -2.3321 -2.8110 21 6 1.8543 -2.0515 -1.5184 22 1 1.3323 -2.7683 -0.9018 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.2538 0.6548 2.5589 27 1 2.9320 0.9515 2.0449 28 1 1.9776 -1.4091 3.7281 29 1 3.6555 -1.1118 3.2138 30 1 3.6489 1.0452 4.4361 31 1 1.9710 0.7486 4.9508 32 1 2.6954 -1.3151 6.1199 33 1 4.3730 -1.0180 5.6047 34 1 4.6707 -1.8168 9.1873 35 1 3.0341 0.9083 -2.3299 36 1 3.5837 -1.0386 -4.1826 37 1 2.5356 -3.2886 -3.3114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:21 Heat of formation + Delta-G solvation = -123.082073 kcal Electronic energy + Delta-G solvation = -15519.309352 eV Core-core repulsion = 12950.569894 eV Total energy + Delta-G solvation = -2568.739458 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50805 -37.84260 -36.34320 -34.37048 -32.35600 -30.17600 -27.88248 -26.90661 -26.50928 -23.54038 -22.98227 -21.74989 -19.33436 -18.56385 -18.30266 -17.14495 -16.81000 -16.64163 -16.40080 -15.31490 -14.74086 -14.32166 -14.05677 -13.61583 -13.43592 -13.17208 -12.81840 -12.57092 -12.39434 -12.30803 -12.19409 -12.06491 -11.95771 -11.79110 -11.69342 -11.41272 -11.29053 -11.22288 -11.01461 -10.52371 -10.27137 -8.14246 -7.89691 -7.21060 -6.27498 1.40891 1.45504 1.59660 2.45633 2.53490 2.79181 3.16794 3.25962 4.08059 4.12631 4.36034 4.47647 4.51840 4.54867 4.63628 4.68146 4.88027 4.92007 5.00994 5.07650 5.15742 5.21225 5.26041 5.27561 5.31114 5.37465 5.44918 5.55800 5.77337 5.88434 6.17064 6.28570 6.40431 6.57419 6.88550 6.89601 7.40827 7.47562 7.52910 8.99291 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053438 B = 0.003352 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.844086 B = 8351.918405 C = 8518.561320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 H 0.047 0.953 4 O -0.406 6.406 5 C 0.065 3.935 6 C -0.107 4.107 7 C -0.090 4.090 8 C 0.022 3.978 9 C -0.545 4.545 10 H 0.064 0.936 11 C -0.010 4.010 12 N -0.938 5.938 13 Si 0.981 3.019 14 H -0.260 1.260 15 H -0.272 1.272 16 H -0.274 1.274 17 C -0.171 4.171 18 C -0.337 4.337 19 C -0.261 4.261 20 C -0.271 4.271 21 C -0.315 4.315 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.062 0.938 32 H -0.009 1.009 33 H -0.014 1.014 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 8.056 3.832 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.100 3.900 3 H 0.065 0.935 4 O -0.326 6.326 5 C -0.011 4.011 6 C -0.145 4.145 7 C -0.128 4.128 8 C -0.015 4.015 9 C -0.583 4.583 10 H 0.082 0.918 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.804 3.196 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.200 1.200 17 C -0.171 4.171 18 C -0.355 4.355 19 C -0.279 4.279 20 C -0.289 4.289 21 C -0.334 4.334 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.009 0.991 33 H 0.005 0.995 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.394 7.738 3.937 9.731 hybrid contribution 0.369 0.027 0.403 0.547 sum -4.025 7.765 4.340 9.764 Atomic orbital electron populations 1.22050 0.94829 1.01627 1.01789 1.20369 0.93710 0.93240 0.82700 0.93479 1.88003 1.87130 1.36815 1.20675 1.22570 0.99497 0.92973 0.86064 1.21472 1.00480 0.98804 0.93731 1.21354 1.00605 0.97552 0.93255 1.19026 0.94287 0.95024 0.93150 1.21736 1.44249 0.95289 0.96991 0.91794 1.26216 0.94844 0.96943 1.02711 1.70174 1.46408 1.14055 1.27235 0.85167 0.77963 0.78737 0.77703 1.18404 1.19766 1.19996 1.19136 1.07283 0.95169 0.95536 1.22047 1.17196 0.95507 1.00785 1.21696 1.11235 0.95030 0.99966 1.21752 1.11640 0.96047 0.99458 1.21923 1.16578 0.95237 0.99631 0.91720 0.91216 0.91395 0.93716 0.92125 0.93771 0.92558 0.93584 0.92674 0.91963 0.99098 0.99536 0.92672 0.90173 0.88912 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.74 9.45 71.98 0.68 -8.06 16 2 C 0.16 10.78 3.14 29.85 0.09 10.87 16 3 H 0.05 3.10 7.76 -2.39 -0.02 3.08 16 4 O -0.41 -28.72 9.93 -148.98 -1.48 -30.20 16 5 C 0.07 4.07 5.75 71.98 0.41 4.48 16 6 C -0.11 -6.91 5.58 30.60 0.17 -6.74 16 7 C -0.09 -5.84 5.15 30.59 0.16 -5.68 16 8 C 0.02 1.66 4.97 29.85 0.15 1.80 16 9 C -0.54 -40.94 9.11 25.60 0.23 -40.70 16 10 H 0.06 4.60 7.74 -2.91 -0.02 4.57 16 11 C -0.01 -0.77 5.46 84.66 0.46 -0.30 16 12 N -0.94 -72.49 13.29 21.45 0.28 -72.21 16 13 Si 0.98 57.57 29.54 68.60 2.03 59.59 16 14 H -0.26 -14.64 7.11 99.48 0.71 -13.93 16 15 H -0.27 -15.30 7.11 99.48 0.71 -14.59 16 16 H -0.27 -15.53 7.11 99.48 0.71 -14.82 16 17 C -0.17 -13.43 5.09 -19.83 -0.10 -13.53 16 18 C -0.34 -26.60 11.08 24.63 0.27 -26.33 16 19 C -0.26 -20.41 11.11 23.98 0.27 -20.15 16 20 C -0.27 -21.47 11.11 23.98 0.27 -21.20 16 21 C -0.32 -25.64 10.92 24.63 0.27 -25.37 16 22 H 0.06 5.18 8.06 -2.91 -0.02 5.16 16 23 H 0.07 3.69 7.87 -2.38 -0.02 3.67 16 24 H 0.07 3.85 8.14 -2.39 -0.02 3.83 16 25 H 0.04 2.75 8.10 -2.39 -0.02 2.73 16 26 H 0.06 3.45 7.87 -2.39 -0.02 3.43 16 27 H 0.04 2.67 8.08 -2.39 -0.02 2.66 16 28 H 0.06 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.05 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.05 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.06 3.81 8.14 -2.38 -0.02 3.79 16 32 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H -0.01 -1.10 8.14 -2.39 -0.02 -1.12 16 34 H 0.26 19.00 8.31 -92.70 -0.77 18.23 16 35 H 0.08 5.95 8.06 -2.91 -0.02 5.92 16 36 H 0.09 6.62 8.06 -2.91 -0.02 6.60 16 37 H 0.09 6.44 8.06 -2.91 -0.02 6.42 16 Total: -2.00 -163.91 316.97 5.17 -158.74 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 1.00 Total: 34.99 kcal Atomic # 6 Polarization: -154.24 SS G_CDS: 3.33 Total: -150.91 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: 0.28 Total: -72.21 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.48 Total: -30.20 kcal Atomic # 14 Polarization: 57.57 SS G_CDS: 2.03 Total: 59.59 kcal Total: -163.91 5.17 -158.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.656 kcal (2) G-P(sol) polarization free energy of solvation -163.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -158.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds