Wall clock time and date at job start Sun Mar 29 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99575 * 2 1 4 4 H 1.08009 * 119.99842 * 202.03818 * 3 2 1 5 5 C 1.38814 * 120.00279 * 22.03224 * 3 2 1 6 6 N 1.31612 * 120.00032 * 16.17915 * 5 3 2 7 7 Si 1.86797 * 119.99951 * 196.17428 * 5 3 2 8 8 H 1.48500 * 109.46892 * 90.00489 * 7 5 3 9 9 H 1.48497 * 109.47243 * 209.99960 * 7 5 3 10 10 H 1.48497 * 109.47363 * 330.00366 * 7 5 3 11 11 C 1.46502 * 120.00188 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.46973 * 93.49184 * 11 2 1 13 13 C 1.35311 * 126.04096 * 100.48173 * 12 11 2 14 14 N 1.34951 * 107.74604 * 179.97438 * 13 12 11 15 15 C 1.46495 * 126.03814 * 179.97438 * 14 13 12 16 16 N 1.40082 * 107.92493 * 359.97438 * 14 13 12 17 17 C 1.30844 * 108.20832 * 359.97438 * 16 14 13 18 18 C 1.50694 * 125.90074 * 180.02562 * 17 16 14 19 19 C 1.53004 * 117.49940 * 8.19818 * 18 17 16 20 20 C 1.53005 * 117.49692 * 299.57459 * 18 17 16 21 21 H 1.08996 * 109.47101 * 275.22133 * 1 2 3 22 22 H 1.08992 * 109.47350 * 35.22725 * 1 2 3 23 23 H 1.09005 * 109.46368 * 155.22729 * 1 2 3 24 24 H 0.96995 * 120.00316 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46960 * 333.48875 * 11 2 1 26 26 H 1.08998 * 109.47032 * 213.49182 * 11 2 1 27 27 H 1.07996 * 126.12565 * 0.02562 * 13 12 11 28 28 H 1.08998 * 109.47405 * 270.02776 * 15 14 13 29 29 H 1.09001 * 109.46764 * 30.02922 * 15 14 13 30 30 H 1.09001 * 109.46991 * 150.02511 * 15 14 13 31 31 H 1.09000 * 115.55326 * 153.91476 * 18 17 16 32 32 H 1.08994 * 117.49597 * 0.02562 * 19 18 17 33 33 H 1.09002 * 117.49625 * 145.02144 * 19 18 17 34 34 H 1.09000 * 117.50181 * 214.97544 * 20 18 17 35 35 H 1.08994 * 117.49978 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1705 1.2201 -0.3510 5 6 1.5315 2.3442 0.4510 6 7 0.4284 2.2664 1.1645 7 14 2.2657 4.0132 0.0452 8 1 1.6978 4.5056 -1.2356 9 1 1.9429 4.9732 1.1312 10 1 3.7398 3.8878 -0.0826 11 6 2.1976 -1.2687 0.0006 12 6 2.5237 -1.6611 -1.4175 13 6 3.7163 -1.4959 -2.0350 14 7 3.5987 -1.9742 -3.2914 15 6 4.6527 -1.9930 -4.3086 16 7 2.2907 -2.4496 -3.4510 17 6 1.6475 -2.2623 -2.3271 18 6 0.2109 -2.6298 -2.0592 19 6 -0.5185 -3.4516 -3.1240 20 6 -0.8609 -1.9728 -2.9314 21 1 -0.3633 0.0935 1.0234 22 1 -0.3633 0.8394 -0.5927 23 1 -0.3632 -0.9332 -0.4306 24 1 -0.0033 3.0757 1.4799 25 1 1.5829 -2.0430 0.4596 26 1 3.1214 -1.1546 0.5676 27 1 4.6035 -1.0601 -1.6000 28 1 4.6168 -1.0693 -4.8862 29 1 5.6246 -2.0804 -3.8231 30 1 4.5008 -2.8433 -4.9735 31 1 -0.0383 -2.8230 -1.0158 32 1 0.0410 -3.7266 -4.0181 33 1 -1.2475 -4.1858 -2.7812 34 1 -1.8152 -1.7342 -2.4620 35 1 -0.5268 -1.2744 -3.6986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232169048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:02 Heat of formation + Delta-G solvation = 130.525324 kcal Electronic energy + Delta-G solvation = -16861.788972 eV Core-core repulsion = 14284.569336 eV Total energy + Delta-G solvation = -2577.219636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72194 -36.76316 -35.39082 -32.66605 -31.30971 -29.52142 -27.16463 -25.84022 -24.88205 -22.55965 -22.05358 -21.24819 -19.69634 -18.61419 -16.68875 -16.07848 -15.18977 -15.02642 -14.65473 -14.24999 -13.45743 -13.34684 -13.17131 -12.70245 -12.45123 -12.24916 -11.66595 -11.49200 -11.20516 -10.83676 -10.81089 -10.67309 -10.46966 -10.30620 -10.17499 -9.87078 -9.74543 -9.67417 -8.55774 -8.44778 -7.69609 -6.60687 -5.60969 -3.04564 2.37426 2.94521 3.27758 3.43378 3.49991 3.50532 4.34869 4.61233 4.78909 5.00641 5.21764 5.28033 5.38929 5.43199 5.49581 5.52331 5.56316 5.92421 5.93638 6.08096 6.15806 6.23748 6.37868 6.46579 6.61117 6.82258 6.94021 6.96119 7.25097 7.51483 7.56644 7.84029 7.91446 8.26848 8.51439 9.35826 10.01178 10.50591 11.43338 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.008749 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.381497 B = 3199.708438 C = 3948.749202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.244 4.244 4 H 0.064 0.936 5 C 0.000 4.000 6 N -0.906 5.906 7 Si 0.898 3.102 8 H -0.291 1.291 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.220 3.780 12 C -0.216 4.216 13 C 0.049 3.951 14 N -0.388 5.388 15 C 0.110 3.890 16 N -0.310 5.310 17 C 0.115 3.885 18 C -0.067 4.067 19 C -0.176 4.176 20 C -0.157 4.157 21 H 0.027 0.973 22 H 0.034 0.966 23 H 0.008 0.992 24 H 0.250 0.750 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.166 0.834 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -10.074 -7.663 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.314 5.314 3 C -0.374 4.374 4 H 0.081 0.919 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.729 3.271 8 H -0.218 1.218 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.091 3.909 12 C -0.229 4.229 13 C -0.096 4.096 14 N -0.172 5.172 15 C -0.032 4.032 16 N -0.133 5.133 17 C -0.051 4.051 18 C -0.087 4.087 19 C -0.213 4.213 20 C -0.195 4.195 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.026 0.974 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.183 0.817 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.581 -10.356 -8.857 14.090 hybrid contribution 0.609 1.575 0.438 1.745 sum 4.190 -8.781 -8.419 12.866 Atomic orbital electron populations 1.20838 0.82728 0.95849 0.98968 1.43857 1.01727 1.00353 1.85449 1.19115 0.97552 0.85537 1.35174 0.91866 1.24908 0.98250 0.98088 0.98581 1.70083 1.20947 1.26735 1.37413 0.86347 0.78514 0.84742 0.77513 1.21807 1.21871 1.20673 1.19026 0.95825 0.88178 0.87858 1.21272 0.92258 1.07419 1.01978 1.22256 1.00521 1.01304 0.85532 1.48198 1.09374 1.49075 1.10514 1.21661 0.87730 1.03086 0.90730 1.77053 0.89863 1.23854 1.22537 1.21122 0.94626 0.98143 0.91197 1.20218 0.86559 1.04831 0.97046 1.22977 1.03063 0.94274 1.00992 1.22910 0.98970 0.95258 1.02387 0.95498 0.94769 0.97399 0.93963 0.93708 0.93259 0.81680 0.91532 0.90054 0.90073 0.86074 0.88569 0.88889 0.88368 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.98 59.85 0.54 4.55 16 2 N -0.59 -15.12 2.91 -182.50 -0.53 -15.65 16 3 C -0.24 -6.82 9.64 -15.06 -0.15 -6.96 16 4 H 0.06 1.74 7.88 -52.48 -0.41 1.32 16 5 C 0.00 -0.01 5.03 -17.43 -0.09 -0.10 16 6 N -0.91 -26.95 10.84 55.49 0.60 -26.35 16 7 Si 0.90 22.40 29.58 -169.99 -5.03 17.38 16 8 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.22 4.67 5.90 -5.19 -0.03 4.64 16 12 C -0.22 -4.28 5.67 -105.05 -0.60 -4.88 16 13 C 0.05 0.86 11.40 -17.22 -0.20 0.66 16 14 N -0.39 -6.48 4.01 -68.17 -0.27 -6.76 16 15 C 0.11 1.23 11.47 59.84 0.69 1.92 16 16 N -0.31 -5.84 12.15 33.67 0.41 -5.43 16 17 C 0.11 2.20 6.75 -82.40 -0.56 1.65 16 18 C -0.07 -1.12 4.57 -91.77 -0.42 -1.54 16 19 C -0.18 -2.47 10.14 -26.72 -0.27 -2.74 16 20 C -0.16 -2.45 9.96 -26.72 -0.27 -2.72 16 21 H 0.03 0.72 7.35 -51.93 -0.38 0.34 16 22 H 0.03 0.93 7.37 -51.93 -0.38 0.55 16 23 H 0.01 0.16 5.15 -51.93 -0.27 -0.10 16 24 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.04 0.89 7.77 -51.93 -0.40 0.48 16 26 H 0.05 1.02 8.06 -51.93 -0.42 0.61 16 27 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.12 1.97 7.05 -51.93 -0.37 1.61 16 32 H 0.10 1.41 7.89 -51.93 -0.41 1.00 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -32.80 294.07 -6.87 -39.67 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.14 Total: -1.78 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.34 Total: -5.51 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.21 Total: -54.19 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.80 -6.87 -39.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232169048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.195 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds