Wall clock time and date at job start Sun Mar 29 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99575 * 2 1 4 4 H 1.08009 * 119.99842 * 202.03818 * 3 2 1 5 5 C 1.38814 * 120.00279 * 22.03224 * 3 2 1 6 6 N 1.31612 * 120.00032 * 16.17915 * 5 3 2 7 7 Si 1.86797 * 119.99951 * 196.17428 * 5 3 2 8 8 H 1.48500 * 109.46892 * 90.00489 * 7 5 3 9 9 H 1.48497 * 109.47243 * 209.99960 * 7 5 3 10 10 H 1.48497 * 109.47363 * 330.00366 * 7 5 3 11 11 C 1.46502 * 120.00188 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.46973 * 93.49184 * 11 2 1 13 13 C 1.35311 * 126.04096 * 100.48173 * 12 11 2 14 14 N 1.34951 * 107.74604 * 179.97438 * 13 12 11 15 15 C 1.46495 * 126.03814 * 179.97438 * 14 13 12 16 16 N 1.40082 * 107.92493 * 359.97438 * 14 13 12 17 17 C 1.30844 * 108.20832 * 359.97438 * 16 14 13 18 18 C 1.50694 * 125.90074 * 180.02562 * 17 16 14 19 19 C 1.53004 * 117.49940 * 8.19818 * 18 17 16 20 20 C 1.53005 * 117.49692 * 299.57459 * 18 17 16 21 21 H 1.08996 * 109.47101 * 275.22133 * 1 2 3 22 22 H 1.08992 * 109.47350 * 35.22725 * 1 2 3 23 23 H 1.09005 * 109.46368 * 155.22729 * 1 2 3 24 24 H 0.96995 * 120.00316 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46960 * 333.48875 * 11 2 1 26 26 H 1.08998 * 109.47032 * 213.49182 * 11 2 1 27 27 H 1.07996 * 126.12565 * 0.02562 * 13 12 11 28 28 H 1.08998 * 109.47405 * 270.02776 * 15 14 13 29 29 H 1.09001 * 109.46764 * 30.02922 * 15 14 13 30 30 H 1.09001 * 109.46991 * 150.02511 * 15 14 13 31 31 H 1.09000 * 115.55326 * 153.91476 * 18 17 16 32 32 H 1.08994 * 117.49597 * 0.02562 * 19 18 17 33 33 H 1.09002 * 117.49625 * 145.02144 * 19 18 17 34 34 H 1.09000 * 117.50181 * 214.97544 * 20 18 17 35 35 H 1.08994 * 117.49978 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1705 1.2201 -0.3510 5 6 1.5315 2.3442 0.4510 6 7 0.4284 2.2664 1.1645 7 14 2.2657 4.0132 0.0452 8 1 1.6978 4.5056 -1.2356 9 1 1.9429 4.9732 1.1312 10 1 3.7398 3.8878 -0.0826 11 6 2.1976 -1.2687 0.0006 12 6 2.5237 -1.6611 -1.4175 13 6 3.7163 -1.4959 -2.0350 14 7 3.5987 -1.9742 -3.2914 15 6 4.6527 -1.9930 -4.3086 16 7 2.2907 -2.4496 -3.4510 17 6 1.6475 -2.2623 -2.3271 18 6 0.2109 -2.6298 -2.0592 19 6 -0.5185 -3.4516 -3.1240 20 6 -0.8609 -1.9728 -2.9314 21 1 -0.3633 0.0935 1.0234 22 1 -0.3633 0.8394 -0.5927 23 1 -0.3632 -0.9332 -0.4306 24 1 -0.0033 3.0757 1.4799 25 1 1.5829 -2.0430 0.4596 26 1 3.1214 -1.1546 0.5676 27 1 4.6035 -1.0601 -1.6000 28 1 4.6168 -1.0693 -4.8862 29 1 5.6246 -2.0804 -3.8231 30 1 4.5008 -2.8433 -4.9735 31 1 -0.0383 -2.8230 -1.0158 32 1 0.0410 -3.7266 -4.0181 33 1 -1.2475 -4.1858 -2.7812 34 1 -1.8152 -1.7342 -2.4620 35 1 -0.5268 -1.2744 -3.6986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232169048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:02 Heat of formation + Delta-G solvation = 110.829700 kcal Electronic energy + Delta-G solvation = -16862.643039 eV Core-core repulsion = 14284.569336 eV Total energy + Delta-G solvation = -2578.073703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07805 -38.01404 -37.28274 -34.09490 -33.07537 -31.14597 -28.46319 -27.87496 -26.51821 -23.83496 -23.32491 -23.00279 -21.15304 -19.99462 -18.57376 -17.55818 -16.84368 -16.36328 -16.10718 -15.59838 -15.27188 -15.04010 -14.80962 -14.07923 -13.75193 -13.47798 -13.22655 -13.09127 -12.79402 -12.65973 -12.43523 -12.32662 -12.14501 -11.94796 -11.88651 -11.55794 -11.50195 -11.05514 -10.57258 -9.88359 -9.13707 -8.66008 -7.74218 -5.20316 1.02521 1.44972 1.47478 1.55093 1.78323 1.84720 2.56634 3.11766 3.36579 3.63752 3.81877 4.01733 4.05221 4.18934 4.21394 4.40741 4.45693 4.56769 4.68120 4.79909 4.80702 4.90936 5.00873 5.02532 5.16943 5.29092 5.32370 5.43900 5.46239 5.69746 5.78338 5.84975 6.29869 6.40078 6.89244 7.23363 7.98248 8.42500 9.27881 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.008749 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.381497 B = 3199.708438 C = 3948.749202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.607 5.607 3 C -0.246 4.246 4 H 0.067 0.933 5 C -0.057 4.057 6 N -0.938 5.938 7 Si 0.959 3.041 8 H -0.295 1.295 9 H -0.295 1.295 10 H -0.266 1.266 11 C 0.224 3.776 12 C -0.250 4.250 13 C 0.055 3.945 14 N -0.385 5.385 15 C 0.099 3.901 16 N -0.330 5.330 17 C 0.103 3.897 18 C -0.090 4.090 19 C -0.146 4.146 20 C -0.163 4.163 21 H 0.001 0.999 22 H 0.001 0.999 23 H 0.041 0.959 24 H 0.245 0.755 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.190 0.810 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -10.897 -8.770 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.329 5.329 3 C -0.377 4.377 4 H 0.085 0.915 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.789 3.211 8 H -0.223 1.223 9 H -0.222 1.222 10 H -0.191 1.191 11 C 0.097 3.903 12 C -0.263 4.263 13 C -0.092 4.092 14 N -0.168 5.168 15 C -0.041 4.041 16 N -0.153 5.153 17 C -0.062 4.062 18 C -0.110 4.110 19 C -0.184 4.184 20 C -0.201 4.201 21 H 0.019 0.981 22 H 0.020 0.980 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.207 0.793 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.866 -11.219 -10.003 15.799 hybrid contribution 0.313 1.741 0.712 1.907 sum 5.178 -9.478 -9.291 14.247 Atomic orbital electron populations 1.20552 0.82961 0.96115 0.96972 1.44097 1.01935 1.01346 1.85536 1.19436 0.97763 0.86634 1.33875 0.91526 1.25644 0.99071 1.01308 0.99127 1.70239 1.22397 1.27055 1.38889 0.85371 0.78526 0.80652 0.76600 1.22277 1.22178 1.19075 1.19050 0.95506 0.86548 0.89215 1.21104 0.93829 1.09938 1.01445 1.22615 1.00679 1.00011 0.85871 1.48614 1.09521 1.47584 1.11042 1.22096 0.87594 1.04106 0.90299 1.76996 0.91028 1.24687 1.22599 1.21431 0.95583 0.98079 0.91116 1.20330 0.85967 1.06907 0.97818 1.23009 1.02169 0.93707 0.99466 1.22909 0.99086 0.96263 1.01865 0.98094 0.97972 0.94041 0.94557 0.92732 0.93119 0.79263 0.90677 0.86849 0.88843 0.85947 0.89101 0.85935 0.87044 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 8.98 127.77 1.15 10.23 16 2 N -0.61 -31.04 2.91 -731.30 -2.13 -33.16 16 3 C -0.25 -13.75 9.64 84.03 0.81 -12.94 16 4 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 5 C -0.06 -3.27 5.03 84.86 0.43 -2.84 16 6 N -0.94 -56.92 10.84 21.65 0.23 -56.69 16 7 Si 0.96 46.24 29.58 68.60 2.03 48.27 16 8 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 C 0.22 9.37 5.90 85.63 0.51 9.88 16 12 C -0.25 -9.65 5.67 -20.14 -0.11 -9.76 16 13 C 0.05 1.83 11.40 83.54 0.95 2.78 16 14 N -0.38 -11.98 4.01 -369.58 -1.48 -13.47 16 15 C 0.10 1.90 11.47 127.77 1.47 3.37 16 16 N -0.33 -11.94 12.15 -47.38 -0.58 -12.51 16 17 C 0.10 3.85 6.75 43.10 0.29 4.14 16 18 C -0.09 -2.93 4.57 -11.54 -0.05 -2.98 16 19 C -0.15 -3.81 10.14 30.60 0.31 -3.50 16 20 C -0.16 -4.93 9.96 30.60 0.30 -4.63 16 21 H 0.00 0.05 7.35 -2.39 -0.02 0.03 16 22 H 0.00 0.08 7.37 -2.39 -0.02 0.06 16 23 H 0.04 1.78 5.15 -2.38 -0.01 1.76 16 24 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.05 2.13 7.77 -2.39 -0.02 2.11 16 26 H 0.05 2.07 8.06 -2.39 -0.02 2.05 16 27 H 0.19 5.20 8.06 -2.91 -0.02 5.18 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 3.85 7.05 -2.39 -0.02 3.83 16 32 H 0.09 2.49 7.89 -2.39 -0.02 2.47 16 33 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -70.47 294.07 5.19 -65.28 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.07 Total: 8.54 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 6.05 Total: -6.26 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.95 Total: -115.83 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.47 5.19 -65.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232169048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.110 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds