Wall clock time and date at job start Sun Mar 29 2020 21:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30494 * 125.65383 * 2 1 4 4 C 1.34127 * 109.25901 * 179.77188 * 3 2 1 5 5 C 1.50694 * 125.99078 * 180.24793 * 4 3 2 6 6 C 1.34666 * 108.01896 * 0.39695 * 4 3 2 7 7 C 1.50699 * 126.58969 * 179.87422 * 6 4 3 8 8 N 1.46906 * 109.47060 * 283.65413 * 7 6 4 9 9 C 1.47961 * 110.99589 * 184.71192 * 8 7 6 10 10 C 1.53946 * 86.17618 * 137.58363 * 9 8 7 11 11 C 1.50701 * 113.73259 * 221.81150 * 10 9 8 12 12 H 1.07995 * 120.00203 * 358.10492 * 11 10 9 13 13 C 1.37877 * 119.99534 * 178.10085 * 11 10 9 14 14 N 1.31506 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99716 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47337 * 59.99736 * 15 13 11 17 17 H 1.48498 * 109.47480 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47306 * 300.00005 * 15 13 11 19 19 C 1.48295 * 111.00598 * 284.06516 * 8 7 6 20 20 N 1.35051 * 125.64662 * 180.02562 * 2 1 3 21 21 H 0.97001 * 126.39796 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.47497 * 269.97563 * 1 2 3 23 23 H 1.09001 * 109.46830 * 29.97799 * 1 2 3 24 24 H 1.08999 * 109.47115 * 149.97653 * 1 2 3 25 25 H 1.09001 * 109.47418 * 274.97687 * 5 4 3 26 26 H 1.09005 * 109.47649 * 34.97608 * 5 4 3 27 27 H 1.09007 * 109.47330 * 154.97563 * 5 4 3 28 28 H 1.09003 * 109.46893 * 163.65922 * 7 6 4 29 29 H 1.08991 * 109.47421 * 43.65565 * 7 6 4 30 30 H 1.09001 * 113.76209 * 23.26895 * 9 8 7 31 31 H 1.08999 * 113.75904 * 251.89516 * 9 8 7 32 32 H 1.09007 * 113.72869 * 90.63855 * 10 9 8 33 33 H 0.97002 * 119.99956 * 179.97438 * 14 13 11 34 34 H 1.08997 * 113.85778 * 108.14295 * 19 8 7 35 35 H 1.09005 * 113.76285 * 336.68564 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0603 0.0000 4 6 3.5543 0.6818 0.0050 5 6 4.7480 1.6015 0.0120 6 6 3.5925 -0.6644 -0.0006 7 6 4.8275 -1.5280 -0.0006 8 7 5.4202 -1.5349 -1.3447 9 6 6.5713 -2.4622 -1.4118 10 6 6.0068 -2.9005 -2.7753 11 6 6.0611 -4.3890 -3.0041 12 1 6.4979 -5.0346 -2.2567 13 6 5.5530 -4.9265 -4.1677 14 7 5.0215 -4.1403 -5.0780 15 14 5.6197 -6.7717 -4.4510 16 1 4.8655 -7.4652 -3.3761 17 1 5.0134 -7.0926 -5.7681 18 1 7.0341 -7.2243 -4.4344 19 6 4.6434 -2.4015 -2.2638 20 7 2.2940 -1.0975 -0.0005 21 1 1.9950 -2.0202 -0.0006 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 4.9860 1.8958 -1.0102 26 1 4.5193 2.4893 0.6018 27 1 5.6023 1.0848 0.4496 28 1 4.5592 -2.5456 0.2834 29 1 5.5492 -1.1300 0.7127 30 1 6.5486 -3.2459 -0.6547 31 1 7.5365 -1.9600 -1.4771 32 1 6.3965 -2.3268 -3.6163 33 1 4.6644 -4.5185 -5.8968 34 1 4.0694 -1.8510 -3.0091 35 1 4.0579 -3.1676 -1.7553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234602184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:19 Heat of formation + Delta-G solvation = 77.224093 kcal Electronic energy + Delta-G solvation = -16476.773719 eV Core-core repulsion = 13897.242768 eV Total energy + Delta-G solvation = -2579.530951 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88096 -38.63242 -33.26873 -32.90105 -32.15209 -29.76467 -28.65493 -26.34435 -25.00664 -24.19110 -22.06520 -20.73990 -19.37281 -18.57103 -17.07751 -16.54008 -15.38393 -14.86951 -14.53423 -14.29167 -13.95707 -13.54419 -13.01493 -12.90301 -12.41809 -12.29178 -12.19078 -11.95178 -11.88591 -11.66873 -11.28750 -11.00733 -10.74361 -10.40436 -9.93473 -9.65097 -9.57908 -9.28185 -9.07178 -8.51122 -7.95792 -7.75723 -6.09937 -4.15386 2.25970 3.24876 3.29741 3.30929 3.32589 3.33154 4.35162 4.55837 4.88978 5.10149 5.17821 5.25168 5.40919 5.47159 5.50068 5.69103 5.78986 5.83625 5.99769 6.09585 6.28679 6.31078 6.35738 6.36890 6.55634 6.58696 6.71472 7.06541 7.09551 7.15424 7.62261 7.67233 7.85243 8.00349 8.30847 8.35325 8.87201 9.49804 10.99278 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031723 B = 0.006079 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.427479 B = 4604.776138 C = 5112.228625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.197 3.803 3 N -0.491 5.491 4 C 0.014 3.986 5 C -0.057 4.057 6 C -0.002 4.002 7 C 0.097 3.903 8 N -0.480 5.480 9 C -0.002 4.002 10 C 0.040 3.960 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.018 3.982 20 N -0.562 5.562 21 H 0.415 0.585 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 5.149 10.300 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 N -0.213 5.213 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.033 4.033 8 N -0.204 5.204 9 C -0.131 4.131 10 C 0.021 3.979 11 C -0.559 4.559 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.111 4.111 20 N -0.166 5.166 21 H 0.253 0.747 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.609 6.706 9.981 13.269 hybrid contribution -0.205 -3.239 0.048 3.246 sum -5.814 3.467 10.029 12.100 Atomic orbital electron populations 1.20118 0.85197 1.03899 1.03043 1.23052 0.95283 0.81820 1.06498 1.70064 1.01876 1.28685 1.20674 1.20394 0.92715 0.91211 1.07167 1.19928 0.92521 0.96779 1.02281 1.20909 0.84904 0.95274 1.10685 1.20947 0.91199 0.95728 0.95396 1.68699 1.06192 1.40715 1.04746 1.24099 0.94461 0.93472 1.01030 1.20296 0.90123 0.96078 0.91388 1.21048 1.39890 0.91555 1.03400 0.92513 1.25016 0.94965 0.97862 0.95786 1.69958 1.39019 1.34895 1.08389 0.86688 0.78455 0.85653 0.77369 1.20354 1.21212 1.20080 1.24055 0.99405 0.92927 0.94733 1.43081 1.06491 1.09777 1.57294 0.74747 0.90581 0.89352 0.90986 0.91260 0.92221 0.91505 0.94282 0.89585 0.92688 0.91270 0.92231 0.92780 0.91684 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 36.00 0.38 -0.27 16 2 C 0.20 2.94 8.15 -155.41 -1.27 1.68 16 3 N -0.49 -8.66 11.25 -7.07 -0.08 -8.74 16 4 C 0.01 0.25 7.09 -82.86 -0.59 -0.34 16 5 C -0.06 -0.85 10.26 36.00 0.37 -0.48 16 6 C 0.00 -0.04 6.45 -81.60 -0.53 -0.57 16 7 C 0.10 1.63 4.89 -4.97 -0.02 1.60 16 8 N -0.48 -9.55 6.22 -239.48 -1.49 -11.04 16 9 C 0.00 -0.04 7.54 -2.75 -0.02 -0.07 16 10 C 0.04 0.99 3.59 -90.83 -0.33 0.67 16 11 C -0.52 -13.91 8.77 -34.44 -0.30 -14.21 16 12 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 15 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.02 0.40 7.21 -2.58 -0.02 0.38 16 20 N -0.56 -8.37 6.15 -6.54 -0.04 -8.41 16 21 H 0.42 5.14 8.96 -40.82 -0.37 4.77 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.91 7.37 -51.92 -0.38 0.53 16 28 H 0.04 0.64 7.68 -51.93 -0.40 0.25 16 29 H 0.09 1.30 7.62 -51.93 -0.40 0.90 16 30 H 0.05 1.08 7.83 -51.93 -0.41 0.67 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.63 8.14 -51.92 -0.42 1.20 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -30.70 296.07 -9.13 -39.83 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.27 Total: 2.68 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.42 Total: -9.89 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.87 Total: -52.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.70 -9.13 -39.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234602184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.053 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds