Wall clock time and date at job start Sun Mar 29 2020 21:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34128 * 125.98942 * 2 1 4 4 C 1.30498 * 109.25660 * 179.97438 * 3 2 1 5 5 N 1.35044 * 108.69841 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.39660 * 179.74090 * 5 4 3 7 7 C 1.34669 * 125.98721 * 179.97438 * 2 1 3 8 8 C 1.50696 * 126.59505 * 0.07375 * 7 2 1 9 9 N 1.46902 * 109.46795 * 269.95675 * 8 7 2 10 10 C 1.47480 * 110.99932 * 265.96687 * 9 8 7 11 11 C 1.53515 * 87.93291 * 221.29938 * 10 9 8 12 12 C 1.50702 * 114.34356 * 139.68504 * 11 10 9 13 13 H 1.08002 * 120.00036 * 266.07638 * 12 11 10 14 14 C 1.37875 * 119.99730 * 86.07527 * 12 11 10 15 15 N 1.31506 * 120.00343 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99451 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47157 * 60.00709 * 16 14 12 18 18 H 1.48505 * 109.46738 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47284 * 300.00008 * 16 14 12 20 20 C 1.47482 * 110.99863 * 169.99548 * 9 8 7 21 21 H 1.08999 * 109.47465 * 90.02169 * 1 2 3 22 22 H 1.08994 * 109.47472 * 210.02475 * 1 2 3 23 23 H 1.09000 * 109.47019 * 330.02565 * 1 2 3 24 24 H 1.08003 * 125.65471 * 180.02562 * 4 3 2 25 25 H 1.09005 * 109.47361 * 90.02256 * 6 5 4 26 26 H 1.09001 * 109.47065 * 210.02046 * 6 5 4 27 27 H 1.09007 * 109.46974 * 330.02164 * 6 5 4 28 28 H 1.09005 * 109.46776 * 29.95345 * 8 7 2 29 29 H 1.08998 * 109.47110 * 149.95502 * 8 7 2 30 30 H 1.08998 * 113.47462 * 336.06739 * 10 9 8 31 31 H 1.08994 * 113.47350 * 106.53311 * 10 9 8 32 32 H 1.09003 * 114.17116 * 272.37974 * 11 10 9 33 33 H 0.97003 * 120.00084 * 180.02562 * 15 14 12 34 34 H 1.08990 * 113.47879 * 253.47333 * 20 9 8 35 35 H 1.09005 * 113.47446 * 23.87690 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5912 -0.6401 0.0004 6 6 4.7996 -1.4684 -0.0045 7 6 2.2983 -1.0897 0.0005 8 6 1.8472 -2.5275 -0.0004 9 7 1.7002 -2.9954 1.3843 10 6 2.9305 -3.6620 1.8504 11 6 2.0388 -4.7173 2.5196 12 6 2.5479 -6.1302 2.3948 13 1 2.2029 -6.7592 1.5875 14 6 3.4542 -6.6198 3.3112 15 7 3.8740 -5.8541 4.2945 16 14 4.0847 -8.3715 3.1569 17 1 4.7706 -8.5373 1.8503 18 1 5.0412 -8.6520 4.2577 19 1 2.9433 -9.3176 3.2405 20 6 1.0366 -4.3117 1.4298 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 4.4004 1.3687 0.0011 25 1 5.1032 -1.6743 1.0220 26 1 4.5941 -2.4078 -0.5179 27 1 5.6005 -0.9396 -0.5213 28 1 0.8894 -2.6075 -0.5146 29 1 2.5878 -3.1403 -0.5144 30 1 3.5419 -4.0603 1.0407 31 1 3.5051 -3.0662 2.5595 32 1 1.7259 -4.4604 3.5316 33 1 4.5119 -6.1985 4.9390 34 1 0.0063 -4.2666 1.7823 35 1 1.1417 -4.8831 0.5074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235540790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:21 Heat of formation + Delta-G solvation = 92.046056 kcal Electronic energy + Delta-G solvation = -16655.075642 eV Core-core repulsion = 14076.187420 eV Total energy + Delta-G solvation = -2578.888223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.87156 -38.88497 -34.11655 -33.04043 -31.84535 -29.36748 -27.59870 -26.01377 -25.09293 -24.71168 -22.50382 -20.46626 -19.26626 -18.70096 -16.84856 -16.34958 -15.70865 -14.84374 -14.68981 -14.43426 -13.95444 -13.78026 -13.27599 -13.13243 -12.38306 -12.35210 -12.09183 -11.99361 -11.86945 -11.73625 -11.24445 -11.02544 -10.72534 -10.40163 -9.98401 -9.60326 -9.43500 -9.17019 -9.02740 -8.51451 -8.09525 -7.84599 -6.12057 -4.17413 2.28282 3.02252 3.24343 3.30304 3.32019 3.36181 4.33856 4.79172 4.80715 4.87517 5.11121 5.16462 5.23442 5.26182 5.50260 5.56999 5.71026 5.78319 5.96106 6.02240 6.20458 6.25771 6.30208 6.34366 6.60154 6.61491 6.65324 7.02262 7.04653 7.10683 7.44238 7.65426 7.83495 7.98466 8.29623 8.34186 8.86086 9.48062 10.97308 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.006050 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.638605 B = 4626.841034 C = 5024.382379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.003 3.997 3 N -0.496 5.496 4 C 0.170 3.830 5 N -0.455 5.455 6 C 0.072 3.928 7 C 0.005 3.995 8 C 0.094 3.906 9 N -0.476 5.476 10 C 0.006 3.994 11 C 0.043 3.957 12 C -0.518 4.518 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.005 4.005 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.200 0.800 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 7.475 -8.990 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 N -0.215 5.215 4 C -0.112 4.112 5 N -0.138 5.138 6 C -0.071 4.071 7 C -0.110 4.110 8 C -0.036 4.036 9 N -0.198 5.198 10 C -0.123 4.123 11 C 0.024 3.976 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.134 4.134 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.217 0.783 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.047 8.792 -8.493 12.224 hybrid contribution 1.414 -2.298 -0.578 2.760 sum 1.367 6.494 -9.071 11.239 Atomic orbital electron populations 1.19977 0.87981 1.02755 1.01325 1.20362 0.96212 0.87784 1.08314 1.70100 1.00496 1.30686 1.20195 1.24711 0.97114 0.81778 1.07604 1.45195 1.06629 1.07629 1.54347 1.22060 0.85101 0.95760 1.04157 1.20921 0.83090 0.96889 1.10108 1.21009 1.00294 0.88526 0.93776 1.68961 1.12956 1.22357 1.15566 1.24116 0.92869 0.96509 0.98828 1.20073 0.90006 0.93512 0.93990 1.20993 1.25448 0.97254 1.11947 0.92438 1.25017 0.96252 0.97428 0.94844 1.69957 1.31588 1.36216 1.14535 0.86678 0.78804 0.85003 0.77640 1.20278 1.21212 1.20065 1.24029 0.99745 0.88914 1.00702 0.92234 0.90919 0.91650 0.78313 0.90046 0.89794 0.89798 0.89610 0.93773 0.93152 0.92175 0.91749 0.92754 0.91676 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.05 36.00 0.36 -0.53 16 2 C 0.00 0.04 7.09 -82.85 -0.59 -0.54 16 3 N -0.50 -8.57 11.25 -10.87 -0.12 -8.70 16 4 C 0.17 2.47 12.56 -90.38 -1.14 1.34 16 5 N -0.45 -6.80 3.15 -121.36 -0.38 -7.19 16 6 C 0.07 0.85 11.01 59.85 0.66 1.51 16 7 C 0.00 0.08 6.54 -81.60 -0.53 -0.45 16 8 C 0.09 1.57 4.71 -4.98 -0.02 1.55 16 9 N -0.48 -9.42 6.32 -246.08 -1.55 -10.97 16 10 C 0.01 0.12 7.28 -7.54 -0.05 0.07 16 11 C 0.04 1.05 3.76 -91.24 -0.34 0.71 16 12 C -0.52 -13.66 8.83 -34.44 -0.30 -13.96 16 13 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -25.00 13.26 55.43 0.74 -24.27 16 16 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.01 -0.11 7.25 -7.54 -0.05 -0.16 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 1.04 7.80 -51.93 -0.40 0.64 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.20 2.04 8.06 -52.48 -0.42 1.61 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.00 7.19 -51.93 -0.37 0.62 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.31 7.75 -51.93 -0.40 0.91 16 29 H 0.04 0.72 6.38 -51.93 -0.33 0.39 16 30 H 0.05 1.08 7.38 -51.93 -0.38 0.70 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 LS Contribution 294.88 15.07 4.44 4.44 Total: -1.00 -30.48 294.88 -9.24 -39.72 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.23 Total: 0.27 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.11 Total: -8.76 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -1.32 Total: -51.13 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.48 -9.24 -39.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235540790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.767 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds