Wall clock time and date at job start Sun Mar 29 2020 21:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34128 * 125.98942 * 2 1 4 4 C 1.30498 * 109.25660 * 179.97438 * 3 2 1 5 5 N 1.35044 * 108.69841 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.39660 * 179.74090 * 5 4 3 7 7 C 1.34669 * 125.98721 * 179.97438 * 2 1 3 8 8 C 1.50696 * 126.59505 * 0.07375 * 7 2 1 9 9 N 1.46902 * 109.46795 * 269.95675 * 8 7 2 10 10 C 1.47480 * 110.99932 * 265.96687 * 9 8 7 11 11 C 1.53515 * 87.93291 * 221.29938 * 10 9 8 12 12 C 1.50702 * 114.34356 * 139.68504 * 11 10 9 13 13 H 1.08002 * 120.00036 * 266.07638 * 12 11 10 14 14 C 1.37875 * 119.99730 * 86.07527 * 12 11 10 15 15 N 1.31506 * 120.00343 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99451 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47157 * 60.00709 * 16 14 12 18 18 H 1.48505 * 109.46738 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47284 * 300.00008 * 16 14 12 20 20 C 1.47482 * 110.99863 * 169.99548 * 9 8 7 21 21 H 1.08999 * 109.47465 * 90.02169 * 1 2 3 22 22 H 1.08994 * 109.47472 * 210.02475 * 1 2 3 23 23 H 1.09000 * 109.47019 * 330.02565 * 1 2 3 24 24 H 1.08003 * 125.65471 * 180.02562 * 4 3 2 25 25 H 1.09005 * 109.47361 * 90.02256 * 6 5 4 26 26 H 1.09001 * 109.47065 * 210.02046 * 6 5 4 27 27 H 1.09007 * 109.46974 * 330.02164 * 6 5 4 28 28 H 1.09005 * 109.46776 * 29.95345 * 8 7 2 29 29 H 1.08998 * 109.47110 * 149.95502 * 8 7 2 30 30 H 1.08998 * 113.47462 * 336.06739 * 10 9 8 31 31 H 1.08994 * 113.47350 * 106.53311 * 10 9 8 32 32 H 1.09003 * 114.17116 * 272.37974 * 11 10 9 33 33 H 0.97003 * 120.00084 * 180.02562 * 15 14 12 34 34 H 1.08990 * 113.47879 * 253.47333 * 20 9 8 35 35 H 1.09005 * 113.47446 * 23.87690 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5912 -0.6401 0.0004 6 6 4.7996 -1.4684 -0.0045 7 6 2.2983 -1.0897 0.0005 8 6 1.8472 -2.5275 -0.0004 9 7 1.7002 -2.9954 1.3843 10 6 2.9305 -3.6620 1.8504 11 6 2.0388 -4.7173 2.5196 12 6 2.5479 -6.1302 2.3948 13 1 2.2029 -6.7592 1.5875 14 6 3.4542 -6.6198 3.3112 15 7 3.8740 -5.8541 4.2945 16 14 4.0847 -8.3715 3.1569 17 1 4.7706 -8.5373 1.8503 18 1 5.0412 -8.6520 4.2577 19 1 2.9433 -9.3176 3.2405 20 6 1.0366 -4.3117 1.4298 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 4.4004 1.3687 0.0011 25 1 5.1032 -1.6743 1.0220 26 1 4.5941 -2.4078 -0.5179 27 1 5.6005 -0.9396 -0.5213 28 1 0.8894 -2.6075 -0.5146 29 1 2.5878 -3.1403 -0.5144 30 1 3.5419 -4.0603 1.0407 31 1 3.5051 -3.0662 2.5595 32 1 1.7259 -4.4604 3.5316 33 1 4.5119 -6.1985 4.9390 34 1 0.0063 -4.2666 1.7823 35 1 1.1417 -4.8831 0.5074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235540790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:21 Heat of formation + Delta-G solvation = 72.627653 kcal Electronic energy + Delta-G solvation = -16655.917687 eV Core-core repulsion = 14076.187420 eV Total energy + Delta-G solvation = -2579.730268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.04665 -40.56336 -35.23782 -34.89411 -33.33373 -30.74208 -28.96182 -27.42911 -26.69780 -26.21776 -24.12428 -21.62376 -20.61683 -20.39036 -18.67753 -17.58634 -17.05150 -16.53811 -16.23984 -15.84067 -15.58802 -15.14595 -14.42231 -14.34449 -13.88355 -13.62033 -13.43440 -13.40004 -13.13546 -13.04421 -12.92107 -12.82087 -12.44588 -12.11701 -11.75635 -11.25359 -10.93935 -10.84583 -10.52499 -10.37376 -9.72351 -9.08441 -8.15636 -6.27628 1.08540 1.43419 1.45076 1.52662 1.96078 2.16023 2.42245 3.13700 3.37458 3.72184 3.83622 3.93142 3.96097 4.24540 4.28319 4.41131 4.45061 4.49346 4.58561 4.65048 4.68893 4.82921 4.90563 4.95615 5.10307 5.14277 5.19640 5.34360 5.56464 5.61808 5.83296 5.86582 6.27038 6.32511 6.38847 6.82371 7.15891 7.41530 8.93822 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.006050 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.638605 B = 4626.841034 C = 5024.382379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.014 4.014 3 N -0.531 5.531 4 C 0.179 3.821 5 N -0.459 5.459 6 C 0.069 3.931 7 C -0.020 4.020 8 C 0.100 3.900 9 N -0.480 5.480 10 C 0.026 3.974 11 C 0.021 3.979 12 C -0.529 4.529 13 H 0.062 0.938 14 C 0.016 3.984 15 N -0.923 5.923 16 Si 0.957 3.043 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.270 1.270 20 C 0.011 3.989 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.240 0.760 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.076 0.924 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 7.315 -10.648 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.143 4.143 3 N -0.251 5.251 4 C -0.103 4.103 5 N -0.141 5.141 6 C -0.073 4.073 7 C -0.136 4.136 8 C -0.029 4.029 9 N -0.202 5.202 10 C -0.104 4.104 11 C 0.002 3.998 12 C -0.567 4.567 13 H 0.081 0.919 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.782 3.218 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.195 1.195 20 C -0.117 4.117 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.256 0.744 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.399 8.622 -10.168 13.337 hybrid contribution 1.271 -2.162 -0.064 2.509 sum 1.670 6.460 -10.232 12.215 Atomic orbital electron populations 1.20009 0.86776 1.02579 1.02445 1.20833 0.97418 0.88008 1.08028 1.70113 1.01770 1.31233 1.21954 1.25540 0.97590 0.82104 1.05045 1.45415 1.06838 1.08123 1.53772 1.22244 0.85062 0.96057 1.03908 1.20948 0.84168 0.96692 1.11759 1.20973 1.01485 0.88712 0.91757 1.68892 1.11327 1.21839 1.18161 1.23787 0.93057 0.95337 0.98193 1.20019 0.92807 0.93601 0.93414 1.21341 1.25198 0.98241 1.11958 0.91936 1.25823 0.96576 1.01420 0.94535 1.70094 1.32456 1.38143 1.15507 0.85629 0.78233 0.80085 0.77829 1.19163 1.21296 1.19473 1.23855 0.99322 0.88970 0.99562 0.90433 0.91195 0.91647 0.74385 0.91306 0.90017 0.85855 0.87902 0.93162 0.92631 0.94582 0.95653 0.92886 0.90581 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.05 71.24 0.72 -0.94 16 2 C -0.01 -0.45 7.09 41.39 0.29 -0.16 16 3 N -0.53 -17.62 11.25 -188.32 -2.12 -19.73 16 4 C 0.18 4.82 12.56 180.26 2.26 7.09 16 5 N -0.46 -12.89 3.15 -537.86 -1.70 -14.59 16 6 C 0.07 1.49 11.01 127.77 1.41 2.90 16 7 C -0.02 -0.66 6.54 40.95 0.27 -0.39 16 8 C 0.10 3.19 4.71 85.56 0.40 3.59 16 9 N -0.48 -18.67 6.32 -932.44 -5.89 -24.56 16 10 C 0.03 1.13 7.28 83.58 0.61 1.73 16 11 C 0.02 1.03 3.76 -11.19 -0.04 0.98 16 12 C -0.53 -27.90 8.83 25.60 0.23 -27.68 16 13 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 14 C 0.02 0.85 5.46 84.66 0.46 1.32 16 15 N -0.92 -53.18 13.26 21.45 0.28 -52.89 16 16 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 20 C 0.01 0.45 7.25 83.58 0.61 1.05 16 21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.07 1.92 7.80 -2.39 -0.02 1.90 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.24 4.05 8.06 -2.91 -0.02 4.03 16 25 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.08 1.80 7.19 -2.39 -0.02 1.78 16 27 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.10 2.92 7.75 -2.38 -0.02 2.90 16 29 H 0.05 1.55 6.38 -2.39 -0.02 1.54 16 30 H 0.06 2.37 7.38 -2.39 -0.02 2.35 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.07 2.53 7.87 -2.38 -0.02 2.51 16 Total: -1.00 -65.78 294.88 0.88 -64.90 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.06 Total: 13.58 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 7.21 Total: -10.51 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -9.42 Total: -111.77 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -65.78 0.88 -64.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235540790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.525 kcal (2) G-P(sol) polarization free energy of solvation -65.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds